Warning: Permanently added '54.196.196.161' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6965707-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64


Version: 0.70
PID: 6082
Logging PID: 6083
Task:
{'appstream': False,
 'background': True,
 'build_id': 6965707,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '4a2467ac33f5b72fc82a55fd9e6b0ac18219aa05',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/seqan',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'seqan',
 'package_version': '1.4.2-53',
 'project_dirname': 'openblas-0.3.23',
 'project_name': 'openblas-0.3.23',
 'project_owner': 'psimovec',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-rawhide-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None},
           {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/',
            'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch',
            'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}],
 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/releng',
 'source_json': {},
 'source_type': None,
 'submitter': 'https://src.fedoraproject.org/user/releng',
 'tags': [],
 'task_id': '6965707-fedora-rawhide-x86_64',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/seqan /var/lib/copr-rpmbuild/workspace/workdir-gcthih1n/seqan --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/seqan', '/var/lib/copr-rpmbuild/workspace/workdir-gcthih1n/seqan', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-gcthih1n/seqan'...

Running: git checkout 4a2467ac33f5b72fc82a55fd9e6b0ac18219aa05 --

cmd: ['git', 'checkout', '4a2467ac33f5b72fc82a55fd9e6b0ac18219aa05', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-gcthih1n/seqan
rc: 0
stdout: 
stderr: Note: switching to '4a2467ac33f5b72fc82a55fd9e6b0ac18219aa05'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 4a2467a automatic import of seqan

Running: copr-distgit-client sources
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o seqan-src-1.4.2.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/seqan/seqan-src-1.4.2.tar.gz/md5/e7d2c6cf6474b5186c27ec31bd32738a/seqan-src-1.4.2.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100  115M  100  115M    0     0   510M      0 --:--:-- --:--:-- --:--:--  511M
INFO: Reading stdout from command: md5sum seqan-src-1.4.2.tar.gz

/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-gcthih1n/seqan/seqan.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-gcthih1n/seqan --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1706326045.829450 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.4 starting (python version = 3.11.3, NVR = mock-5.4-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-gcthih1n/seqan/seqan.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-gcthih1n/seqan --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1706326045.829450 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-gcthih1n/seqan/seqan.spec)  Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.4
INFO: Mock Version: 5.4
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1706326045.829450/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1706326045.829450/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/d73b0d06a4f1f0d332b0d3c8b8bceb13634b9e10a9812375c5e01eb5ed4b256e/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/d73b0d06a4f1f0d332b0d3c8b8bceb13634b9e10a9812375c5e01eb5ed4b256e/merged) with podman image umount
INFO: Using 'dnf' instead of 'dnf5' for bootstrap chroot
INFO: Package manager dnf detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf5 tooling
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                 124 MB/s |  25 MB     00:00    
Additional repo http_kojipkgs_fedoraproject_org 208 MB/s |  73 MB     00:00    
fedora                                           30 MB/s |  75 MB     00:02    
Last metadata expiration check: 0:00:04 ago on Sat Jan 27 03:27:49 2024.
Dependencies resolved.
==========================================================================================================
 Package        Arch    Version       Repository                                                      Size
==========================================================================================================
Installing:
 dnf5           x86_64  5.1.11-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  543 k
 dnf5-plugins   x86_64  5.1.11-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  329 k
Installing dependencies:
 fmt            x86_64  10.2.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  125 k
 libdnf5        x86_64  5.1.11-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  926 k
 libdnf5-cli    x86_64  5.1.11-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  219 k
 sdbus-cpp      x86_64  1.4.0-1.fc40  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  109 k

Transaction Summary
==========================================================================================================
Install  6 Packages

Total download size: 2.2 M
Installed size: 6.1 M
Downloading Packages:
(1/6): dnf5-plugins-5.1.11-1.fc40.x86_64.rpm     10 MB/s | 329 kB     00:00    
(2/6): fmt-10.2.1-1.fc40.x86_64.rpm             3.7 MB/s | 125 kB     00:00    
(3/6): libdnf5-cli-5.1.11-1.fc40.x86_64.rpm      22 MB/s | 219 kB     00:00    
(4/6): libdnf5-5.1.11-1.fc40.x86_64.rpm          66 MB/s | 926 kB     00:00    
(5/6): sdbus-cpp-1.4.0-1.fc40.x86_64.rpm         19 MB/s | 109 kB     00:00    
(6/6): dnf5-5.1.11-1.fc40.x86_64.rpm             10 MB/s | 543 kB     00:00    
--------------------------------------------------------------------------------
Total                                            40 MB/s | 2.2 MB     00:00     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : fmt-10.2.1-1.fc40.x86_64                               1/6 
  Installing       : libdnf5-5.1.11-1.fc40.x86_64                           2/6 
  Installing       : libdnf5-cli-5.1.11-1.fc40.x86_64                       3/6 
  Installing       : dnf5-5.1.11-1.fc40.x86_64                              4/6 
  Installing       : sdbus-cpp-1.4.0-1.fc40.x86_64                          5/6 
  Installing       : dnf5-plugins-5.1.11-1.fc40.x86_64                      6/6 
  Running scriptlet: dnf5-plugins-5.1.11-1.fc40.x86_64                      6/6 

Installed:
  dnf5-5.1.11-1.fc40.x86_64              dnf5-plugins-5.1.11-1.fc40.x86_64      
  fmt-10.2.1-1.fc40.x86_64               libdnf5-5.1.11-1.fc40.x86_64           
  libdnf5-cli-5.1.11-1.fc40.x86_64       sdbus-cpp-1.4.0-1.fc40.x86_64          

Complete!
INFO: Switching package manager from dnf to the dnf5 (direct choice)
Finish(bootstrap): installing dnf5 tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1706326045.829450/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.1-2.fc40.x86_64
  rpm-sequoia-1.5.0-2.fc40.x86_64
  python3-dnf-4.18.2-1.fc40.noarch
  yum-4.18.2-1.fc40.noarch
  dnf5-5.1.11-1.fc40.x86_64
  dnf5-plugins-5.1.11-1.fc40.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 fedora                                 100% |  29.1 MiB/s |  20.7 MiB |  00m01s
 Copr repository                        100% |  45.0 MiB/s |   4.4 MiB |  00m00s
 Additional repo http_kojipkgs_fedorapr 100% | 130.7 MiB/s |  17.0 MiB |  00m00s
Repositories loaded.
Package                           Arch   Version                    Repository                                                         Size
Installing group/module packages:                                                                                                          
 bash                             x86_64 5.2.26-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.1 MiB
 bzip2                            x86_64 1.0.8-16.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  91.5 KiB
 coreutils                        x86_64 9.4-3.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.8 MiB
 cpio                             x86_64 2.15-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 diffutils                        x86_64 3.10-3.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 fedora-release-common            noarch 40-0.29                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  19.1 KiB
 findutils                        x86_64 1:4.9.0-6.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 gawk                             x86_64 5.3.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 glibc-minimal-langpack           x86_64 2.38.9000-35.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 grep                             x86_64 3.11-5.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 gzip                             x86_64 1.12-6.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 372.0 KiB
 info                             x86_64 7.1-1.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 373.6 KiB
 patch                            x86_64 2.7.6-22.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 254.6 KiB
 redhat-rpm-config                noarch 280-1.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 183.2 KiB
 rpm-build                        x86_64 4.19.1-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 181.2 KiB
 sed                              x86_64 4.8-14.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 797.8 KiB
 shadow-utils                     x86_64 2:4.14.0-2.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.0 MiB
 tar                              x86_64 2:1.35-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.0 MiB
 unzip                            x86_64 6.0-62.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 394.6 KiB
 util-linux                       x86_64 2.39.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.5 MiB
 which                            x86_64 2.21-40.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  80.1 KiB
 xz                               x86_64 5.4.5-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.0 MiB
Installing dependencies:                                                                                                                   
 alternatives                     x86_64 1.26-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  62.3 KiB
 ansible-srpm-macros              noarch 1-12.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.7 KiB
 audit-libs                       x86_64 4.0-7.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 311.3 KiB
 authselect                       x86_64 1.5.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 156.5 KiB
 authselect-libs                  x86_64 1.5.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 987.8 KiB
 basesystem                       noarch 11-18.fc39                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 binutils                         x86_64 2.41-30.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  26.4 MiB
 binutils-gold                    x86_64 2.41-30.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.0 MiB
 bzip2-libs                       x86_64 1.0.8-16.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  80.6 KiB
 ca-certificates                  noarch 2023.2.62_v7.0.401-4.fc40  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 coreutils-common                 x86_64 9.4-3.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.4 MiB
 cracklib                         x86_64 2.9.11-2.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 246.6 KiB
 crypto-policies                  noarch 20231204-1.git1e3a2e4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149.3 KiB
 curl                             x86_64 8.5.0-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 794.4 KiB
 cyrus-sasl-lib                   x86_64 2.1.28-17.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 debugedit                        x86_64 5.0-12.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 198.8 KiB
 dwz                              x86_64 0.15-3.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 282.9 KiB
 ed                               x86_64 1.20-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146.4 KiB
 efi-srpm-macros                  noarch 5-9.fc39                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.1 KiB
 elfutils                         x86_64 0.190-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.8 MiB
 elfutils-debuginfod-client       x86_64 0.190-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  60.7 KiB
 elfutils-default-yama-scope      noarch 0.190-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 KiB
 elfutils-libelf                  x86_64 0.190-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 elfutils-libs                    x86_64 0.190-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 690.0 KiB
 fedora-gpg-keys                  noarch 40-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 123.2 KiB
 fedora-release                   noarch 40-0.29                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 fedora-release-identity-basic    noarch 40-0.29                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694.0   B
 fedora-repos                     noarch 40-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.9 KiB
 fedora-repos-rawhide             noarch 40-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 KiB
 file                             x86_64 5.45-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103.4 KiB
 file-libs                        x86_64 5.45-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.9 MiB
 filesystem                       x86_64 3.18-6.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.0   B
 fonts-srpm-macros                noarch 1:2.0.5-12.fc39            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  55.3 KiB
 forge-srpm-macros                noarch 0.2.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.4 KiB
 fpc-srpm-macros                  noarch 1.3-8.fc39                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.0   B
 gdb-minimal                      x86_64 14.1-7.fc40                copr_base                                                      12.3 MiB
 gdbm                             x86_64 1:1.23-4.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 472.5 KiB
 gdbm-libs                        x86_64 1:1.23-4.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 125.7 KiB
 ghc-srpm-macros                  noarch 1.6.1-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 369.0   B
 glibc                            x86_64 2.38.9000-35.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.7 MiB
 glibc-common                     x86_64 2.38.9000-35.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 glibc-gconv-extra                x86_64 2.38.9000-35.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.8 MiB
 gmp                              x86_64 1:6.2.1-5.fc39             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 798.5 KiB
 gnat-srpm-macros                 noarch 6-3.fc39                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 KiB
 go-srpm-macros                   noarch 3.3.1-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  60.6 KiB
 jansson                          x86_64 2.13.1-7.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  84.3 KiB
 kernel-srpm-macros               noarch 1.0-20.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 keyutils-libs                    x86_64 1.6.3-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  54.3 KiB
 krb5-libs                        x86_64 1.21.2-3.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 libacl                           x86_64 2.3.2-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.0 KiB
 libarchive                       x86_64 3.7.2-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 922.5 KiB
 libattr                          x86_64 2.5.2-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  28.5 KiB
 libblkid                         x86_64 2.39.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 229.0 KiB
 libbrotli                        x86_64 1.1.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 825.3 KiB
 libcap                           x86_64 2.69-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 224.6 KiB
 libcap-ng                        x86_64 0.8.4-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  73.1 KiB
 libcom_err                       x86_64 1.47.0-2.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  67.1 KiB
 libcurl                          x86_64 8.5.0-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 768.6 KiB
 libeconf                         x86_64 0.5.2-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  55.9 KiB
 libevent                         x86_64 2.1.12-9.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 899.2 KiB
 libfdisk                         x86_64 2.39.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 362.9 KiB
 libffi                           x86_64 3.4.4-5.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  81.5 KiB
 libgcc                           x86_64 14.0.1-0.3.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 270.6 KiB
 libgomp                          x86_64 14.0.1-0.3.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 517.7 KiB
 libidn2                          x86_64 2.3.4-3.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 323.0 KiB
 libmount                         x86_64 2.39.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 352.1 KiB
 libnghttp2                       x86_64 1.59.0-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 166.1 KiB
 libnsl2                          x86_64 2.0.1-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  57.9 KiB
 libpkgconf                       x86_64 1.9.5-2.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  78.1 KiB
 libpsl                           x86_64 0.21.5-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  80.5 KiB
 libpwquality                     x86_64 1.4.5-6.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 417.4 KiB
 libselinux                       x86_64 3.6-2.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 173.0 KiB
 libsemanage                      x86_64 3.6-1.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 293.5 KiB
 libsepol                         x86_64 3.6-1.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 810.0 KiB
 libsmartcols                     x86_64 2.39.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.1 KiB
 libssh                           x86_64 0.10.6-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 517.2 KiB
 libssh-config                    noarch 0.10.6-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 277.0   B
 libstdc++                        x86_64 14.0.1-0.3.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.8 MiB
 libtasn1                         x86_64 4.19.0-3.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 175.6 KiB
 libtirpc                         x86_64 1.3.4-1.rc1.fc40           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 202.8 KiB
 libunistring                     x86_64 1.1-5.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 libutempter                      x86_64 1.2.1-10.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  57.6 KiB
 libuuid                          x86_64 2.39.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.5 KiB
 libverto                         x86_64 0.3.2-6.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  29.4 KiB
 libxcrypt                        x86_64 4.4.36-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 262.8 KiB
 libxml2                          x86_64 2.12.4-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 libzstd                          x86_64 1.5.5-4.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 772.0 KiB
 lua-libs                         x86_64 5.4.6-3.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 289.0 KiB
 lua-srpm-macros                  noarch 1-9.fc39                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 KiB
 lz4-libs                         x86_64 1.9.4-4.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 133.3 KiB
 mpfr                             x86_64 4.2.1-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 820.1 KiB
 ncurses-base                     noarch 6.4-9.20240113.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.2 KiB
 ncurses-libs                     x86_64 6.4-9.20240113.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 963.1 KiB
 ocaml-srpm-macros                noarch 9-1.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 openblas-srpm-macros             noarch 2-14.fc39                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 104.0   B
 openldap                         x86_64 2.6.6-1.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 641.5 KiB
 openssl-libs                     x86_64 1:3.1.4-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.8 MiB
 p11-kit                          x86_64 0.25.3-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.4 MiB
 p11-kit-trust                    x86_64 0.25.3-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 459.4 KiB
 package-notes-srpm-macros        noarch 0.5-9.fc39                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 KiB
 pam                              x86_64 1.6.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 pam-libs                         x86_64 1.6.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 135.0 KiB
 pcre2                            x86_64 10.42-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 633.4 KiB
 pcre2-syntax                     noarch 10.42-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 235.1 KiB
 perl-srpm-macros                 noarch 1-51.fc39                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0   B
 pkgconf                          x86_64 1.9.5-2.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  83.7 KiB
 pkgconf-m4                       noarch 1.9.5-2.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  13.9 KiB
 pkgconf-pkg-config               x86_64 1.9.5-2.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 989.0   B
 popt                             x86_64 1.19-3.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.8 KiB
 publicsuffix-list-dafsa          noarch 20240107-1.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  67.5 KiB
 pyproject-srpm-macros            noarch 1.12.0-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 KiB
 python-srpm-macros               noarch 3.12-7.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  50.1 KiB
 qt5-srpm-macros                  noarch 5.15.12-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 492.0   B
 qt6-srpm-macros                  noarch 6.6.1-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0   B
 readline                         x86_64 8.2-7.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 489.2 KiB
 rpm                              x86_64 4.19.1-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.0 MiB
 rpm-build-libs                   x86_64 4.19.1-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 202.3 KiB
 rpm-libs                         x86_64 4.19.1-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 749.7 KiB
 rpm-sequoia                      x86_64 1.6.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 MiB
 rust-srpm-macros                 noarch 25.2-2.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.1 KiB
 setup                            noarch 2.14.5-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.4 KiB
 sqlite-libs                      x86_64 3.45.0-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.4 MiB
 systemd-libs                     x86_64 255.3-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 util-linux-core                  x86_64 2.39.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.4 MiB
 xxhash-libs                      x86_64 0.8.2-1.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  88.4 KiB
 xz-libs                          x86_64 5.4.5-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 209.7 KiB
 zig-srpm-macros                  noarch 1-1.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 KiB
 zip                              x86_64 3.0-39.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 711.2 KiB
 zlib-ng-compat                   x86_64 2.1.6-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 130.0 KiB
 zstd                             x86_64 1.5.5-4.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
Installing groups:                                                                                                                         
 Buildsystem building group                                                                                                                

Transaction Summary:
 Installing:      152 packages

Total size of inbound packages is 52 MiB. Need to download 52 MiB.
After this operation 178 MiB will be used (install 178 MiB, remove 0 B).
[  1/152] bash-0:5.2.26-1.fc40.x86_64   100% |  51.0 MiB/s |   1.8 MiB |  00m00s
[  2/152] bzip2-0:1.0.8-16.fc39.x86_64  100% |   1.5 MiB/s |  52.3 KiB |  00m00s
[  3/152] diffutils-0:3.10-3.fc39.x86_6 100% |  63.4 MiB/s | 389.6 KiB |  00m00s
[  4/152] fedora-release-common-0:40-0. 100% |   3.3 MiB/s |  20.5 KiB |  00m00s
[  5/152] cpio-0:2.15-1.fc40.x86_64     100% |  17.4 MiB/s | 285.1 KiB |  00m00s
[  6/152] findutils-1:4.9.0-6.fc40.x86_ 100% |  67.2 MiB/s | 482.0 KiB |  00m00s
[  7/152] glibc-minimal-langpack-0:2.38 100% |  23.6 MiB/s |  96.5 KiB |  00m00s
[  8/152] coreutils-0:9.4-3.fc40.x86_64 100% |  16.6 MiB/s |   1.1 MiB |  00m00s
[  9/152] grep-0:3.11-5.fc40.x86_64     100% |  40.1 MiB/s | 287.4 KiB |  00m00s
[ 10/152] gzip-0:1.12-6.fc39.x86_64     100% |  25.9 MiB/s | 159.1 KiB |  00m00s
[ 11/152] info-0:7.1-1.fc40.x86_64      100% |  22.5 MiB/s | 184.5 KiB |  00m00s
[ 12/152] patch-0:2.7.6-22.fc39.x86_64  100% |  20.4 MiB/s | 125.4 KiB |  00m00s
[ 13/152] redhat-rpm-config-0:280-1.fc4 100% |  18.4 MiB/s |  75.2 KiB |  00m00s
[ 14/152] gawk-0:5.3.0-1.fc40.x86_64    100% |  34.1 MiB/s |   1.1 MiB |  00m00s
[ 15/152] rpm-build-0:4.19.1-2.fc40.x86 100% |  17.5 MiB/s |  71.8 KiB |  00m00s
[ 16/152] sed-0:4.8-14.fc39.x86_64      100% |  32.3 MiB/s | 297.5 KiB |  00m00s
[ 17/152] tar-2:1.35-2.fc40.x86_64      100% |  92.7 MiB/s | 854.6 KiB |  00m00s
[ 18/152] unzip-0:6.0-62.fc39.x86_64    100% |  25.7 MiB/s | 184.4 KiB |  00m00s
[ 19/152] util-linux-0:2.39.3-4.fc40.x8 100% | 122.5 MiB/s |   1.1 MiB |  00m00s
[ 20/152] which-0:2.21-40.fc39.x86_64   100% |   6.8 MiB/s |  41.8 KiB |  00m00s
[ 21/152] shadow-utils-2:4.14.0-2.fc40. 100% |  52.4 MiB/s |   1.2 MiB |  00m00s
[ 22/152] glibc-common-0:2.38.9000-35.f 100% |  61.3 MiB/s | 376.5 KiB |  00m00s
[ 23/152] xz-0:5.4.5-1.fc40.x86_64      100% |  37.1 MiB/s | 531.3 KiB |  00m00s
[ 24/152] libblkid-0:2.39.3-4.fc40.x86_ 100% |  16.0 MiB/s | 114.4 KiB |  00m00s
[ 25/152] libfdisk-0:2.39.3-4.fc40.x86_ 100% |  25.9 MiB/s | 159.3 KiB |  00m00s
[ 26/152] libmount-0:2.39.3-4.fc40.x86_ 100% |  18.8 MiB/s | 153.9 KiB |  00m00s
[ 27/152] libsmartcols-0:2.39.3-4.fc40. 100% |  16.5 MiB/s |  67.6 KiB |  00m00s
[ 28/152] libuuid-0:2.39.3-4.fc40.x86_6 100% |   5.5 MiB/s |  28.4 KiB |  00m00s
[ 29/152] util-linux-core-0:2.39.3-4.fc 100% |  68.3 MiB/s | 489.5 KiB |  00m00s
[ 30/152] glibc-0:2.38.9000-35.fc40.x86 100% |  61.8 MiB/s |   2.2 MiB |  00m00s
[ 31/152] libselinux-0:3.6-2.fc40.x86_6 100% |  10.7 MiB/s |  87.8 KiB |  00m00s
[ 32/152] xz-libs-0:5.4.5-1.fc40.x86_64 100% |   8.1 MiB/s | 108.4 KiB |  00m00s
[ 33/152] glibc-gconv-extra-0:2.38.9000 100% |  77.6 MiB/s |   1.6 MiB |  00m00s
[ 34/152] ncurses-libs-0:6.4-9.20240113 100% |  54.1 MiB/s | 332.4 KiB |  00m00s
[ 35/152] libxcrypt-0:4.4.36-4.fc40.x86 100% |  10.5 MiB/s | 118.4 KiB |  00m00s
[ 36/152] audit-libs-0:4.0-7.fc40.x86_6 100% |  23.4 MiB/s | 120.0 KiB |  00m00s
[ 37/152] authselect-libs-0:1.5.0-1.fc4 100% |  32.6 MiB/s | 233.5 KiB |  00m00s
[ 38/152] systemd-libs-0:255.3-1.fc40.x 100% |  69.0 MiB/s | 707.0 KiB |  00m00s
[ 39/152] libcap-ng-0:0.8.4-2.fc40.x86_ 100% |   6.4 MiB/s |  32.6 KiB |  00m00s
[ 40/152] libutempter-0:1.2.1-10.fc39.x 100% |   6.4 MiB/s |  26.3 KiB |  00m00s
[ 41/152] pam-libs-0:1.6.0-1.fc40.x86_6 100% |  13.9 MiB/s |  56.9 KiB |  00m00s
[ 42/152] pam-0:1.6.0-1.fc40.x86_64     100% |  84.0 MiB/s | 516.0 KiB |  00m00s
[ 43/152] readline-0:8.2-7.fc40.x86_64  100% |  34.7 MiB/s | 213.2 KiB |  00m00s
[ 44/152] zlib-ng-compat-0:2.1.6-1.fc40 100% |  14.9 MiB/s |  76.4 KiB |  00m00s
[ 45/152] bzip2-libs-0:1.0.8-16.fc39.x8 100% |  10.1 MiB/s |  41.3 KiB |  00m00s
[ 46/152] libacl-0:2.3.2-1.fc40.x86_64  100% |   6.0 MiB/s |  24.4 KiB |  00m00s
[ 47/152] libcap-0:2.69-1.fc40.x86_64   100% |  11.6 MiB/s |  83.1 KiB |  00m00s
[ 48/152] libgcc-0:14.0.1-0.3.fc40.x86_ 100% |  10.9 MiB/s | 111.4 KiB |  00m00s
[ 49/152] libzstd-0:1.5.5-4.fc39.x86_64 100% |  37.7 MiB/s | 308.6 KiB |  00m00s
[ 50/152] lz4-libs-0:1.9.4-4.fc39.x86_6 100% |  13.0 MiB/s |  66.7 KiB |  00m00s
[ 51/152] libeconf-0:0.5.2-1.fc40.x86_6 100% |   7.3 MiB/s |  30.1 KiB |  00m00s
[ 52/152] libattr-0:2.5.2-1.fc40.x86_64 100% |   3.5 MiB/s |  18.0 KiB |  00m00s
[ 53/152] libsemanage-0:3.6-1.fc40.x86_ 100% |  18.9 MiB/s | 116.1 KiB |  00m00s
[ 54/152] setup-0:2.14.5-1.fc40.noarch  100% |  28.9 MiB/s | 148.1 KiB |  00m00s
[ 55/152] debugedit-0:5.0-12.fc40.x86_6 100% |  12.8 MiB/s |  78.4 KiB |  00m00s
[ 56/152] elfutils-libelf-0:0.190-4.fc4 100% |  27.1 MiB/s | 194.3 KiB |  00m00s
[ 57/152] elfutils-0:0.190-4.fc40.x86_6 100% |  48.3 MiB/s | 544.6 KiB |  00m00s
[ 58/152] file-0:5.45-1.fc40.x86_64     100% |   8.0 MiB/s |  49.2 KiB |  00m00s
[ 59/152] pkgconf-pkg-config-0:1.9.5-2. 100% |   1.2 MiB/s |   9.6 KiB |  00m00s
[ 60/152] popt-0:1.19-3.fc39.x86_64     100% |  11.6 MiB/s |  59.2 KiB |  00m00s
[ 61/152] rpm-0:4.19.1-2.fc40.x86_64    100% |  71.2 MiB/s | 510.6 KiB |  00m00s
[ 62/152] rpm-build-libs-0:4.19.1-2.fc4 100% |  18.8 MiB/s |  96.1 KiB |  00m00s
[ 63/152] binutils-0:2.41-30.fc40.x86_6 100% | 155.4 MiB/s |   6.2 MiB |  00m00s
[ 64/152] zstd-0:1.5.5-4.fc39.x86_64    100% |  42.8 MiB/s | 482.3 KiB |  00m00s
[ 65/152] libarchive-0:3.7.2-1.fc40.x86 100% |  56.9 MiB/s | 407.9 KiB |  00m00s
[ 66/152] rpm-libs-0:4.19.1-2.fc40.x86_ 100% |  21.8 MiB/s | 312.5 KiB |  00m00s
[ 67/152] dwz-0:0.15-3.fc39.x86_64      100% |  26.2 MiB/s | 134.1 KiB |  00m00s
[ 68/152] ansible-srpm-macros-0:1-12.fc 100% |   2.3 MiB/s |  20.9 KiB |  00m00s
[ 69/152] fonts-srpm-macros-1:2.0.5-12. 100% |   6.5 MiB/s |  26.5 KiB |  00m00s
[ 70/152] efi-srpm-macros-0:5-9.fc39.no 100% |   1.8 MiB/s |  22.2 KiB |  00m00s
[ 71/152] forge-srpm-macros-0:0.2.0-1.f 100% |   4.5 MiB/s |  18.5 KiB |  00m00s
[ 72/152] fpc-srpm-macros-0:1.3-8.fc39. 100% |   2.4 MiB/s |   7.4 KiB |  00m00s
[ 73/152] ghc-srpm-macros-0:1.6.1-3.fc4 100% |   2.0 MiB/s |   8.1 KiB |  00m00s
[ 74/152] gnat-srpm-macros-0:6-3.fc39.n 100% |   2.2 MiB/s |   8.8 KiB |  00m00s
[ 75/152] go-srpm-macros-0:3.3.1-1.fc40 100% |   6.8 MiB/s |  27.7 KiB |  00m00s
[ 76/152] kernel-srpm-macros-0:1.0-20.f 100% |   2.6 MiB/s |  10.5 KiB |  00m00s
[ 77/152] lua-srpm-macros-0:1-9.fc39.no 100% |   2.1 MiB/s |   8.6 KiB |  00m00s
[ 78/152] ocaml-srpm-macros-0:9-1.fc40. 100% |   2.2 MiB/s |   9.0 KiB |  00m00s
[ 79/152] openblas-srpm-macros-0:2-14.f 100% |   1.8 MiB/s |   7.5 KiB |  00m00s
[ 80/152] package-notes-srpm-macros-0:0 100% |   2.7 MiB/s |  11.2 KiB |  00m00s
[ 81/152] pyproject-srpm-macros-0:1.12. 100% |   2.7 MiB/s |  13.6 KiB |  00m00s
[ 82/152] perl-srpm-macros-0:1-51.fc39. 100% | 889.9 KiB/s |   8.0 KiB |  00m00s
[ 83/152] python-srpm-macros-0:3.12-7.f 100% |   2.9 MiB/s |  23.8 KiB |  00m00s
[ 84/152] qt5-srpm-macros-0:5.15.12-1.f 100% |   2.1 MiB/s |   8.4 KiB |  00m00s
[ 85/152] qt6-srpm-macros-0:6.6.1-3.fc4 100% |   2.9 MiB/s |   8.8 KiB |  00m00s
[ 86/152] rust-srpm-macros-0:25.2-2.fc4 100% |   3.2 MiB/s |  13.0 KiB |  00m00s
[ 87/152] zig-srpm-macros-0:1-1.fc40.no 100% |   2.6 MiB/s |   8.0 KiB |  00m00s
[ 88/152] zip-0:3.0-39.fc40.x86_64      100% |  51.9 MiB/s | 265.6 KiB |  00m00s
[ 89/152] pkgconf-m4-0:1.9.5-2.fc39.noa 100% |   3.4 MiB/s |  13.9 KiB |  00m00s
[ 90/152] pkgconf-0:1.9.5-2.fc39.x86_64 100% |  10.4 MiB/s |  42.5 KiB |  00m00s
[ 91/152] libpkgconf-0:1.9.5-2.fc39.x86 100% |   7.4 MiB/s |  37.7 KiB |  00m00s
[ 92/152] ed-0:1.20-1.fc40.x86_64       100% |  16.0 MiB/s |  81.7 KiB |  00m00s
[ 93/152] authselect-0:1.5.0-1.fc40.x86 100% |  28.1 MiB/s | 143.8 KiB |  00m00s
[ 94/152] gdbm-1:1.23-4.fc39.x86_64     100% |  29.2 MiB/s | 149.6 KiB |  00m00s
[ 95/152] libnsl2-0:2.0.1-1.fc40.x86_64 100% |   7.2 MiB/s |  29.6 KiB |  00m00s
[ 96/152] gdbm-libs-1:1.23-4.fc39.x86_6 100% |  13.7 MiB/s |  56.1 KiB |  00m00s
[ 97/152] libpwquality-0:1.4.5-6.fc39.x 100% |  26.4 MiB/s | 108.3 KiB |  00m00s
[ 98/152] libtirpc-0:1.3.4-1.rc1.fc40.x 100% |  13.1 MiB/s |  93.7 KiB |  00m00s
[ 99/152] openssl-libs-1:3.1.4-1.fc40.x 100% | 155.4 MiB/s |   2.2 MiB |  00m00s
[100/152] ca-certificates-0:2023.2.62_v 100% |  64.8 MiB/s | 862.6 KiB |  00m00s
[101/152] crypto-policies-0:20231204-1. 100% |   6.7 MiB/s |  68.7 KiB |  00m00s
[102/152] ncurses-base-0:6.4-9.20240113 100% |  12.4 MiB/s |  63.5 KiB |  00m00s
[103/152] libcom_err-0:1.47.0-2.fc39.x8 100% |   6.3 MiB/s |  26.0 KiB |  00m00s
[104/152] krb5-libs-0:1.21.2-3.fc40.x86 100% | 104.8 MiB/s | 751.5 KiB |  00m00s
[105/152] libsepol-0:3.6-1.fc40.x86_64  100% |  55.3 MiB/s | 339.7 KiB |  00m00s
[106/152] cracklib-0:2.9.11-2.fc39.x86_ 100% |  16.2 MiB/s |  82.7 KiB |  00m00s
[107/152] pcre2-0:10.42-2.fc40.x86_64   100% |  38.0 MiB/s | 233.2 KiB |  00m00s
[108/152] libxml2-0:2.12.4-1.fc40.x86_6 100% |  95.2 MiB/s | 682.6 KiB |  00m00s
[109/152] keyutils-libs-0:1.6.3-1.fc40. 100% |   7.6 MiB/s |  31.3 KiB |  00m00s
[110/152] libverto-0:0.3.2-6.fc39.x86_6 100% |   5.0 MiB/s |  20.4 KiB |  00m00s
[111/152] basesystem-0:11-18.fc39.noarc 100% |   1.8 MiB/s |   7.2 KiB |  00m00s
[112/152] gmp-1:6.2.1-5.fc39.x86_64     100% |  50.9 MiB/s | 312.6 KiB |  00m00s
[113/152] mpfr-0:4.2.1-1.fc40.x86_64    100% |  47.8 MiB/s | 342.8 KiB |  00m00s
[114/152] filesystem-0:3.18-6.fc39.x86_ 100% |  89.1 MiB/s |   1.1 MiB |  00m00s
[115/152] file-libs-0:5.45-1.fc40.x86_6 100% |  93.2 MiB/s | 763.2 KiB |  00m00s
[116/152] fedora-repos-0:40-0.2.noarch  100% |   2.3 MiB/s |   9.3 KiB |  00m00s
[117/152] elfutils-libs-0:0.190-4.fc40. 100% |  42.1 MiB/s | 258.7 KiB |  00m00s
[118/152] libstdc++-0:14.0.1-0.3.fc40.x 100% | 106.2 MiB/s | 870.1 KiB |  00m00s
[119/152] p11-kit-0:0.25.3-1.fc40.x86_6 100% |  70.8 MiB/s | 507.6 KiB |  00m00s
[120/152] alternatives-0:1.26-1.fc40.x8 100% |   6.4 MiB/s |  39.6 KiB |  00m00s
[121/152] p11-kit-trust-0:0.25.3-1.fc40 100% |  12.6 MiB/s | 141.5 KiB |  00m00s
[122/152] coreutils-common-0:9.4-3.fc40 100% |  92.4 MiB/s |   2.1 MiB |  00m00s
[123/152] binutils-gold-0:2.41-30.fc40. 100% |  54.5 MiB/s | 781.8 KiB |  00m00s
[124/152] elfutils-debuginfod-client-0: 100% |   2.8 MiB/s |  37.6 KiB |  00m00s
[125/152] jansson-0:2.13.1-7.fc39.x86_6 100% |   4.8 MiB/s |  44.1 KiB |  00m00s
[126/152] lua-libs-0:5.4.6-3.fc39.x86_6 100% |  18.5 MiB/s | 132.7 KiB |  00m00s
[127/152] rpm-sequoia-0:1.6.0-1.fc40.x8 100% |  75.3 MiB/s | 848.2 KiB |  00m00s
[128/152] libgomp-0:14.0.1-0.3.fc40.x86 100% |  53.9 MiB/s | 331.1 KiB |  00m00s
[129/152] pcre2-syntax-0:10.42-2.fc40.n 100% |  20.0 MiB/s | 143.1 KiB |  00m00s
[130/152] sqlite-libs-0:3.45.0-1.fc40.x 100% |  32.8 MiB/s | 704.4 KiB |  00m00s
[131/152] libffi-0:3.4.4-5.fc40.x86_64  100% |   6.4 MiB/s |  39.4 KiB |  00m00s
[132/152] fedora-gpg-keys-0:40-0.2.noar 100% |  23.3 MiB/s | 119.4 KiB |  00m00s
[133/152] libtasn1-0:4.19.0-3.fc39.x86_ 100% |   4.8 MiB/s |  74.2 KiB |  00m00s
[134/152] fedora-repos-rawhide-0:40-0.2 100% |   2.2 MiB/s |   8.9 KiB |  00m00s
[135/152] fedora-release-0:40-0.29.noar 100% |   2.4 MiB/s |  10.0 KiB |  00m00s
[136/152] elfutils-default-yama-scope-0 100% |   1.4 MiB/s |  12.8 KiB |  00m00s
[137/152] curl-0:8.5.0-2.fc40.x86_64    100% |  39.9 MiB/s | 367.5 KiB |  00m00s
[138/152] fedora-release-identity-basic 100% |   2.1 MiB/s |  10.8 KiB |  00m00s
[139/152] xxhash-libs-0:0.8.2-1.fc39.x8 100% |   6.1 MiB/s |  37.3 KiB |  00m00s
[140/152] libcurl-0:8.5.0-2.fc40.x86_64 100% |  47.9 MiB/s | 343.2 KiB |  00m00s
[141/152] libidn2-0:2.3.4-3.fc39.x86_64 100% |  21.6 MiB/s | 110.6 KiB |  00m00s
[142/152] libbrotli-0:1.1.0-1.fc40.x86_ 100% |  46.9 MiB/s | 335.9 KiB |  00m00s
[143/152] libnghttp2-0:1.59.0-1.fc40.x8 100% |  14.7 MiB/s |  75.1 KiB |  00m00s
[144/152] libpsl-0:0.21.5-1.fc40.x86_64 100% |  15.4 MiB/s |  63.3 KiB |  00m00s
[145/152] libssh-0:0.10.6-2.fc40.x86_64 100% |  41.5 MiB/s | 212.5 KiB |  00m00s
[146/152] openldap-0:2.6.6-1.fc39.x86_6 100% |  49.8 MiB/s | 254.8 KiB |  00m00s
[147/152] gdb-minimal-0:14.1-7.fc40.x86 100% | 107.4 MiB/s |   4.2 MiB |  00m00s
[148/152] libevent-0:2.1.12-9.fc39.x86_ 100% |  28.0 MiB/s | 257.7 KiB |  00m00s
[149/152] libssh-config-0:0.10.6-2.fc40 100% |   1.5 MiB/s |   9.1 KiB |  00m00s
[150/152] cyrus-sasl-lib-0:2.1.28-17.fc 100% |  59.3 MiB/s | 789.0 KiB |  00m00s
[151/152] publicsuffix-list-dafsa-0:202 100% |  14.2 MiB/s |  58.0 KiB |  00m00s
[152/152] libunistring-0:1.1-5.fc40.x86 100% |  75.8 MiB/s | 543.2 KiB |  00m00s
--------------------------------------------------------------------------------
[152/152] Total                         100% | 108.5 MiB/s |  51.7 MiB |  00m00s
Running transaction
[  1/154] Verify package files          100% | 878.0   B/s | 152.0   B |  00m00s
>>> Running pre-transaction scriptlet: filesystem-0:3.18-6.fc39.x86_64
>>> Stop pre-transaction scriptlet: filesystem-0:3.18-6.fc39.x86_64
[  2/154] Prepare transaction           100% |   3.8 KiB/s | 152.0   B |  00m00s
[  3/154] Installing libgcc-0:14.0.1-0. 100% | 133.0 MiB/s | 272.3 KiB |  00m00s
>>> Running post-install scriptlet: libgcc-0:14.0.1-0.3.fc40.x86_64
>>> Stop post-install scriptlet: libgcc-0:14.0.1-0.3.fc40.x86_64
[  4/154] Installing crypto-policies-0: 100% |  35.5 MiB/s | 181.7 KiB |  00m00s
>>> Running post-install scriptlet: crypto-policies-0:20231204-1.git1e3a2e4.fc40
>>> Stop post-install scriptlet: crypto-policies-0:20231204-1.git1e3a2e4.fc40.no
[  5/154] Installing fedora-release-ide 100% |   0.0   B/s | 952.0   B |  00m00s
[  6/154] Installing fedora-gpg-keys-0: 100% |  40.9 MiB/s | 167.6 KiB |  00m00s
[  7/154] Installing fedora-repos-rawhi 100% |   0.0   B/s |   2.4 KiB |  00m00s
[  8/154] Installing fedora-repos-0:40- 100% |   0.0   B/s |   5.7 KiB |  00m00s
[  9/154] Installing fedora-release-com 100% |  22.6 MiB/s |  23.2 KiB |  00m00s
[ 10/154] Installing fedora-release-0:4 100% |   0.0   B/s | 124.0   B |  00m00s
[ 11/154] Installing setup-0:2.14.5-1.f 100% |  59.1 MiB/s | 725.8 KiB |  00m00s
>>> Running post-install scriptlet: setup-0:2.14.5-1.fc40.noarch
>>> Stop post-install scriptlet: setup-0:2.14.5-1.fc40.noarch
[ 12/154] Installing filesystem-0:3.18- 100% |   2.8 MiB/s | 212.4 KiB |  00m00s
[ 13/154] Installing basesystem-0:11-18 100% |   0.0   B/s | 124.0   B |  00m00s
[ 14/154] Installing publicsuffix-list- 100% |   0.0   B/s |  68.3 KiB |  00m00s
[ 15/154] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[ 16/154] Installing pcre2-syntax-0:10. 100% | 232.0 MiB/s | 237.6 KiB |  00m00s
[ 17/154] Installing coreutils-common-0 100% | 347.4 MiB/s |  11.5 MiB |  00m00s
[ 18/154] Installing ncurses-base-0:6.4 100% |  85.9 MiB/s | 351.6 KiB |  00m00s
[ 19/154] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 20/154] Installing ncurses-libs-0:6.4 100% | 236.7 MiB/s | 969.6 KiB |  00m00s
>>> Running pre-install scriptlet: glibc-0:2.38.9000-35.fc40.x86_64
>>> Stop pre-install scriptlet: glibc-0:2.38.9000-35.fc40.x86_64
[ 21/154] Installing glibc-0:2.38.9000- 100% | 210.8 MiB/s |   6.7 MiB |  00m00s
>>> Running post-install scriptlet: glibc-0:2.38.9000-35.fc40.x86_64
>>> Stop post-install scriptlet: glibc-0:2.38.9000-35.fc40.x86_64
[ 22/154] Installing bash-0:5.2.26-1.fc 100% | 371.0 MiB/s |   8.2 MiB |  00m00s
>>> Running post-install scriptlet: bash-0:5.2.26-1.fc40.x86_64
>>> Stop post-install scriptlet: bash-0:5.2.26-1.fc40.x86_64
[ 23/154] Installing glibc-common-0:2.3 100% | 170.2 MiB/s |   1.0 MiB |  00m00s
[ 24/154] Installing glibc-gconv-extra- 100% | 218.4 MiB/s |   7.9 MiB |  00m00s
>>> Running post-install scriptlet: glibc-gconv-extra-0:2.38.9000-35.fc40.x86_64
>>> Stop post-install scriptlet: glibc-gconv-extra-0:2.38.9000-35.fc40.x86_64
[ 25/154] Installing zlib-ng-compat-0:2 100% | 127.8 MiB/s | 130.8 KiB |  00m00s
[ 26/154] Installing xz-libs-0:5.4.5-1. 100% | 102.9 MiB/s | 210.8 KiB |  00m00s
[ 27/154] Installing bzip2-libs-0:1.0.8 100% |  79.8 MiB/s |  81.7 KiB |  00m00s
[ 28/154] Installing libuuid-0:2.39.3-4 100% |   0.0   B/s |  38.8 KiB |  00m00s
[ 29/154] Installing readline-0:8.2-7.f 100% | 239.9 MiB/s | 491.4 KiB |  00m00s
[ 30/154] Installing libzstd-0:1.5.5-4. 100% | 188.8 MiB/s | 773.2 KiB |  00m00s
[ 31/154] Installing elfutils-libelf-0: 100% | 328.6 MiB/s |   1.0 MiB |  00m00s
[ 32/154] Installing popt-0:1.19-3.fc39 100% |  70.0 MiB/s | 143.4 KiB |  00m00s
[ 33/154] Installing libstdc++-0:14.0.1 100% | 345.3 MiB/s |   2.8 MiB |  00m00s
[ 34/154] Installing libblkid-0:2.39.3- 100% | 224.7 MiB/s | 230.1 KiB |  00m00s
[ 35/154] Installing libxcrypt-0:4.4.36 100% | 259.3 MiB/s | 265.5 KiB |  00m00s
[ 36/154] Installing libattr-0:2.5.2-1. 100% |   0.0   B/s |  29.5 KiB |  00m00s
[ 37/154] Installing libacl-0:2.3.2-1.f 100% |   0.0   B/s |  40.8 KiB |  00m00s
[ 38/154] Installing gmp-1:6.2.1-5.fc39 100% | 391.0 MiB/s | 800.8 KiB |  00m00s
[ 39/154] Installing lz4-libs-0:1.9.4-4 100% | 131.2 MiB/s | 134.4 KiB |  00m00s
[ 40/154] Installing libeconf-0:0.5.2-1 100% |   0.0   B/s |  57.6 KiB |  00m00s
[ 41/154] Installing gdbm-libs-1:1.23-4 100% | 124.4 MiB/s | 127.4 KiB |  00m00s
[ 42/154] Installing mpfr-0:4.2.1-1.fc4 100% | 267.4 MiB/s | 821.6 KiB |  00m00s
[ 43/154] Installing gawk-0:5.3.0-1.fc4 100% | 246.3 MiB/s |   1.7 MiB |  00m00s
[ 44/154] Installing dwz-0:0.15-3.fc39. 100% | 277.6 MiB/s | 284.2 KiB |  00m00s
[ 45/154] Installing unzip-0:6.0-62.fc3 100% | 194.4 MiB/s | 398.2 KiB |  00m00s
[ 46/154] Installing file-libs-0:5.45-1 100% | 620.9 MiB/s |   9.9 MiB |  00m00s
[ 47/154] Installing file-0:5.45-1.fc40 100% | 102.5 MiB/s | 104.9 KiB |  00m00s
[ 48/154] Installing libsmartcols-0:2.3 100% | 142.0 MiB/s | 145.4 KiB |  00m00s
[ 49/154] Installing libcap-ng-0:0.8.4- 100% |  73.2 MiB/s |  75.0 KiB |  00m00s
[ 50/154] Installing audit-libs-0:4.0-7 100% | 306.0 MiB/s | 313.4 KiB |  00m00s
[ 51/154] Installing pam-libs-0:1.6.0-1 100% | 134.1 MiB/s | 137.3 KiB |  00m00s
[ 52/154] Installing libcap-0:2.69-1.fc 100% | 223.9 MiB/s | 229.3 KiB |  00m00s
[ 53/154] Installing systemd-libs-0:255 100% | 386.1 MiB/s |   1.9 MiB |  00m00s
[ 54/154] Installing libcom_err-0:1.47. 100% |   0.0   B/s |  68.2 KiB |  00m00s
[ 55/154] Installing libsepol-0:3.6-1.f 100% | 396.0 MiB/s | 811.0 KiB |  00m00s
[ 56/154] Installing pcre2-0:10.42-2.fc 100% | 310.0 MiB/s | 634.8 KiB |  00m00s
[ 57/154] Installing libselinux-0:3.6-2 100% | 170.2 MiB/s | 174.2 KiB |  00m00s
[ 58/154] Installing sed-0:4.8-14.fc39. 100% | 196.7 MiB/s | 805.9 KiB |  00m00s
[ 59/154] Installing grep-0:3.11-5.fc40 100% | 199.1 MiB/s |   1.0 MiB |  00m00s
[ 60/154] Installing findutils-1:4.9.0- 100% | 245.6 MiB/s |   1.5 MiB |  00m00s
[ 61/154] Installing xz-0:5.4.5-1.fc40. 100% | 250.2 MiB/s |   2.0 MiB |  00m00s
[ 62/154] Installing libmount-0:2.39.3- 100% | 172.5 MiB/s | 353.3 KiB |  00m00s
[ 63/154] Installing alternatives-0:1.2 100% |  62.5 MiB/s |  64.0 KiB |  00m00s
[ 64/154] Installing jansson-0:2.13.1-7 100% |  83.6 MiB/s |  85.6 KiB |  00m00s
[ 65/154] Installing lua-libs-0:5.4.6-3 100% | 283.4 MiB/s | 290.2 KiB |  00m00s
[ 66/154] Installing libtasn1-0:4.19.0- 100% | 173.3 MiB/s | 177.4 KiB |  00m00s
[ 67/154] Installing libunistring-0:1.1 100% | 348.5 MiB/s |   1.7 MiB |  00m00s
[ 68/154] Installing libidn2-0:2.3.4-3. 100% | 160.6 MiB/s | 328.9 KiB |  00m00s
[ 69/154] Installing libpsl-0:0.21.5-1. 100% |  79.7 MiB/s |  81.7 KiB |  00m00s
[ 70/154] Installing util-linux-core-0: 100% | 229.1 MiB/s |   1.4 MiB |  00m00s
[ 71/154] Installing tar-2:1.35-2.fc40. 100% | 330.0 MiB/s |   3.0 MiB |  00m00s
[ 72/154] Installing libsemanage-0:3.6- 100% | 144.1 MiB/s | 295.2 KiB |  00m00s
[ 73/154] Installing shadow-utils-2:4.1 100% | 139.5 MiB/s |   4.0 MiB |  00m00s
>>> Running pre-install scriptlet: libutempter-0:1.2.1-10.fc39.x86_64
>>> Stop pre-install scriptlet: libutempter-0:1.2.1-10.fc39.x86_64
[ 74/154] Installing libutempter-0:1.2. 100% |  58.2 MiB/s |  59.5 KiB |  00m00s
[ 75/154] Installing zip-0:3.0-39.fc40. 100% | 232.8 MiB/s | 715.1 KiB |  00m00s
[ 76/154] Installing gdbm-1:1.23-4.fc39 100% | 233.1 MiB/s | 477.4 KiB |  00m00s
[ 77/154] Installing cyrus-sasl-lib-0:2 100% | 326.2 MiB/s |   2.3 MiB |  00m00s
[ 78/154] Installing zstd-0:1.5.5-4.fc3 100% | 407.7 MiB/s |   1.6 MiB |  00m00s
[ 79/154] Installing libfdisk-0:2.39.3- 100% | 355.5 MiB/s | 364.0 KiB |  00m00s
[ 80/154] Installing bzip2-0:1.0.8-16.f 100% |  93.7 MiB/s |  96.0 KiB |  00m00s
[ 81/154] Installing libxml2-0:2.12.4-1 100% | 338.3 MiB/s |   1.7 MiB |  00m00s
[ 82/154] Installing sqlite-libs-0:3.45 100% | 350.3 MiB/s |   1.4 MiB |  00m00s
[ 83/154] Installing ed-0:1.20-1.fc40.x 100% | 145.2 MiB/s | 148.7 KiB |  00m00s
[ 84/154] Installing patch-0:2.7.6-22.f 100% | 250.1 MiB/s | 256.1 KiB |  00m00s
[ 85/154] Installing elfutils-default-y 100% | 340.5 KiB/s |   2.0 KiB |  00m00s
>>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.190-4.fc40.n
>>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.190-4.fc40.noar
[ 86/154] Installing cpio-0:2.15-1.fc40 100% | 219.9 MiB/s |   1.1 MiB |  00m00s
[ 87/154] Installing diffutils-0:3.10-3 100% | 263.0 MiB/s |   1.6 MiB |  00m00s
[ 88/154] Installing libpkgconf-0:1.9.5 100% |   0.0   B/s |  79.2 KiB |  00m00s
[ 89/154] Installing pkgconf-0:1.9.5-2. 100% |  84.2 MiB/s |  86.3 KiB |  00m00s
[ 90/154] Installing keyutils-libs-0:1. 100% |  54.4 MiB/s |  55.7 KiB |  00m00s
[ 91/154] Installing libverto-0:0.3.2-6 100% |  30.4 MiB/s |  31.2 KiB |  00m00s
[ 92/154] Installing libgomp-0:14.0.1-0 100% | 253.5 MiB/s | 519.1 KiB |  00m00s
[ 93/154] Installing libffi-0:3.4.4-5.f 100% |  80.9 MiB/s |  82.9 KiB |  00m00s
[ 94/154] Installing p11-kit-0:0.25.3-1 100% | 267.7 MiB/s |   2.4 MiB |  00m00s
[ 95/154] Installing p11-kit-trust-0:0. 100% |  50.0 MiB/s | 461.1 KiB |  00m00s
>>> Running post-install scriptlet: p11-kit-trust-0:0.25.3-1.fc40.x86_64
>>> Stop post-install scriptlet: p11-kit-trust-0:0.25.3-1.fc40.x86_64
[ 96/154] Installing openssl-libs-1:3.1 100% | 354.2 MiB/s |   7.8 MiB |  00m00s
[ 97/154] Installing coreutils-0:9.4-3. 100% | 252.6 MiB/s |   5.8 MiB |  00m00s
>>> Running pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40.n
>>> Stop pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40.noar
[ 98/154] Installing ca-certificates-0: 100% |   3.8 MiB/s |   2.3 MiB |  00m01s
>>> Running post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40.
>>> Stop post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40.noa
[ 99/154] Installing krb5-libs-0:1.21.2 100% | 254.9 MiB/s |   2.3 MiB |  00m00s
[100/154] Installing libtirpc-0:1.3.4-1 100% | 199.7 MiB/s | 204.5 KiB |  00m00s
[101/154] Installing gzip-0:1.12-6.fc39 100% | 184.3 MiB/s | 377.5 KiB |  00m00s
>>> Running pre-install scriptlet: authselect-libs-0:1.5.0-1.fc40.x86_64
>>> Stop pre-install scriptlet: authselect-libs-0:1.5.0-1.fc40.x86_64
[102/154] Installing authselect-libs-0: 100% | 195.9 MiB/s |   1.0 MiB |  00m00s
[103/154] Installing authselect-0:1.5.0 100% |  78.6 MiB/s | 160.9 KiB |  00m00s
[104/154] Installing cracklib-0:2.9.11- 100% |  63.0 MiB/s | 257.9 KiB |  00m00s
[105/154] Installing libpwquality-0:1.4 100% | 104.9 MiB/s | 429.8 KiB |  00m00s
[106/154] Installing libnsl2-0:2.0.1-1. 100% |  57.7 MiB/s |  59.0 KiB |  00m00s
[107/154] Installing pam-0:1.6.0-1.fc40 100% | 150.9 MiB/s |   1.8 MiB |  00m00s
[108/154] Installing libssh-0:0.10.6-2. 100% | 253.6 MiB/s | 519.3 KiB |  00m00s
[109/154] Installing libarchive-0:3.7.2 100% | 300.9 MiB/s | 924.5 KiB |  00m00s
[110/154] Installing rpm-sequoia-0:1.6. 100% | 372.2 MiB/s |   2.2 MiB |  00m00s
[111/154] Installing rpm-libs-0:4.19.1- 100% | 366.8 MiB/s | 751.3 KiB |  00m00s
[112/154] Installing libevent-0:2.1.12- 100% | 293.9 MiB/s | 903.0 KiB |  00m00s
[113/154] Installing openldap-0:2.6.6-1 100% | 210.0 MiB/s | 645.3 KiB |  00m00s
[114/154] Installing xxhash-libs-0:0.8. 100% |   0.0   B/s |  89.8 KiB |  00m00s
[115/154] Installing libbrotli-0:1.1.0- 100% | 269.4 MiB/s | 827.6 KiB |  00m00s
[116/154] Installing libnghttp2-0:1.59. 100% | 163.3 MiB/s | 167.2 KiB |  00m00s
[117/154] Installing libcurl-0:8.5.0-2. 100% | 375.8 MiB/s | 769.7 KiB |  00m00s
[118/154] Installing elfutils-debuginfo 100% |  61.2 MiB/s |  62.7 KiB |  00m00s
[119/154] Installing elfutils-libs-0:0. 100% | 337.7 MiB/s | 691.6 KiB |  00m00s
[120/154] Installing binutils-gold-0:2. 100% | 169.3 MiB/s |   2.0 MiB |  00m00s
>>> Running post-install scriptlet: binutils-gold-0:2.41-30.fc40.x86_64
>>> Stop post-install scriptlet: binutils-gold-0:2.41-30.fc40.x86_64
[121/154] Installing binutils-0:2.41-30 100% | 347.4 MiB/s |  26.4 MiB |  00m00s
>>> Running post-install scriptlet: binutils-0:2.41-30.fc40.x86_64
>>> Stop post-install scriptlet: binutils-0:2.41-30.fc40.x86_64
[122/154] Installing elfutils-0:0.190-4 100% | 351.6 MiB/s |   2.8 MiB |  00m00s
[123/154] Installing gdb-minimal-0:14.1 100% | 371.8 MiB/s |  12.3 MiB |  00m00s
[124/154] Installing debugedit-0:5.0-12 100% | 196.8 MiB/s | 201.5 KiB |  00m00s
[125/154] Installing rpm-build-libs-0:4 100% | 198.4 MiB/s | 203.2 KiB |  00m00s
[126/154] Installing curl-0:8.5.0-2.fc4 100% |  70.7 MiB/s | 796.7 KiB |  00m00s
>>> Running pre-install scriptlet: rpm-0:4.19.1-2.fc40.x86_64
>>> Stop pre-install scriptlet: rpm-0:4.19.1-2.fc40.x86_64
[127/154] Installing rpm-0:4.19.1-2.fc4 100% | 159.7 MiB/s |   2.4 MiB |  00m00s
[128/154] Installing efi-srpm-macros-0: 100% |   0.0   B/s |  41.2 KiB |  00m00s
[129/154] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[130/154] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.7 KiB |  00m00s
[131/154] Installing pkgconf-m4-0:1.9.5 100% |   0.0   B/s |  14.3 KiB |  00m00s
[132/154] Installing pkgconf-pkg-config 100% |   0.0   B/s |   1.8 KiB |  00m00s
[133/154] Installing rust-srpm-macros-0 100% |   0.0   B/s |   5.8 KiB |  00m00s
[134/154] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 732.0   B |  00m00s
[135/154] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 768.0   B |  00m00s
[136/154] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[137/154] Installing package-notes-srpm 100% |   0.0   B/s |   2.0 KiB |  00m00s
[138/154] Installing openblas-srpm-macr 100% |   0.0   B/s | 384.0   B |  00m00s
[139/154] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.2 KiB |  00m00s
[140/154] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[141/154] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[142/154] Installing ghc-srpm-macros-0: 100% |   0.0   B/s | 648.0   B |  00m00s
[143/154] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[144/154] Installing ansible-srpm-macro 100% |   0.0   B/s |  36.2 KiB |  00m00s
[145/154] Installing fonts-srpm-macros- 100% |   0.0   B/s |  56.5 KiB |  00m00s
[146/154] Installing forge-srpm-macros- 100% |   0.0   B/s |  38.6 KiB |  00m00s
[147/154] Installing go-srpm-macros-0:3 100% |   0.0   B/s |  61.6 KiB |  00m00s
[148/154] Installing python-srpm-macros 100% |   0.0   B/s |  51.3 KiB |  00m00s
[149/154] Installing redhat-rpm-config- 100% |  92.6 MiB/s | 189.6 KiB |  00m00s
[150/154] Installing rpm-build-0:4.19.1 100% |  92.5 MiB/s | 189.4 KiB |  00m00s
[151/154] Installing pyproject-srpm-mac 100% |   2.0 MiB/s |   2.1 KiB |  00m00s
[152/154] Installing util-linux-0:2.39. 100% | 209.1 MiB/s |   3.6 MiB |  00m00s
[153/154] Installing which-0:2.21-40.fc 100% |  80.4 MiB/s |  82.3 KiB |  00m00s
[154/154] Installing info-0:7.1-1.fc40. 100% | 442.6 KiB/s | 374.0 KiB |  00m01s
>>> Running post-transaction scriptlet: filesystem-0:3.18-6.fc39.x86_64
>>> Stop post-transaction scriptlet: filesystem-0:3.18-6.fc39.x86_64
>>> Running post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.f
>>> Stop post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40
>>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-1.fc40.x86_64
>>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-1.fc40.x86_64
>>> Running post-transaction scriptlet: rpm-0:4.19.1-2.fc40.x86_64
>>> Stop post-transaction scriptlet: rpm-0:4.19.1-2.fc40.x86_64
>>> Running trigger-install scriptlet: glibc-common-0:2.38.9000-35.fc40.x86_64
>>> Stop trigger-install scriptlet: glibc-common-0:2.38.9000-35.fc40.x86_64
>>> Running trigger-install scriptlet: info-0:7.1-1.fc40.x86_64
>>> Stop trigger-install scriptlet: info-0:7.1-1.fc40.x86_64
Warning: skipped PGP checks for 152 package(s).
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: alternatives-1.26-1.fc40.x86_64
ansible-srpm-macros-1-12.fc40.noarch
audit-libs-4.0-7.fc40.x86_64
authselect-1.5.0-1.fc40.x86_64
authselect-libs-1.5.0-1.fc40.x86_64
basesystem-11-18.fc39.noarch
bash-5.2.26-1.fc40.x86_64
binutils-2.41-30.fc40.x86_64
binutils-gold-2.41-30.fc40.x86_64
bzip2-1.0.8-16.fc39.x86_64
bzip2-libs-1.0.8-16.fc39.x86_64
ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch
coreutils-9.4-3.fc40.x86_64
coreutils-common-9.4-3.fc40.x86_64
cpio-2.15-1.fc40.x86_64
cracklib-2.9.11-2.fc39.x86_64
crypto-policies-20231204-1.git1e3a2e4.fc40.noarch
curl-8.5.0-2.fc40.x86_64
cyrus-sasl-lib-2.1.28-17.fc40.x86_64
debugedit-5.0-12.fc40.x86_64
diffutils-3.10-3.fc39.x86_64
dwz-0.15-3.fc39.x86_64
ed-1.20-1.fc40.x86_64
efi-srpm-macros-5-9.fc39.noarch
elfutils-0.190-4.fc40.x86_64
elfutils-debuginfod-client-0.190-4.fc40.x86_64
elfutils-default-yama-scope-0.190-4.fc40.noarch
elfutils-libelf-0.190-4.fc40.x86_64
elfutils-libs-0.190-4.fc40.x86_64
fedora-gpg-keys-40-0.2.noarch
fedora-release-40-0.29.noarch
fedora-release-common-40-0.29.noarch
fedora-release-identity-basic-40-0.29.noarch
fedora-repos-40-0.2.noarch
fedora-repos-rawhide-40-0.2.noarch
file-5.45-1.fc40.x86_64
file-libs-5.45-1.fc40.x86_64
filesystem-3.18-6.fc39.x86_64
findutils-4.9.0-6.fc40.x86_64
fonts-srpm-macros-2.0.5-12.fc39.noarch
forge-srpm-macros-0.2.0-1.fc40.noarch
fpc-srpm-macros-1.3-8.fc39.noarch
gawk-5.3.0-1.fc40.x86_64
gdb-minimal-14.1-7.fc40.x86_64
gdbm-1.23-4.fc39.x86_64
gdbm-libs-1.23-4.fc39.x86_64
ghc-srpm-macros-1.6.1-3.fc40.noarch
glibc-2.38.9000-35.fc40.x86_64
glibc-common-2.38.9000-35.fc40.x86_64
glibc-gconv-extra-2.38.9000-35.fc40.x86_64
glibc-minimal-langpack-2.38.9000-35.fc40.x86_64
gmp-6.2.1-5.fc39.x86_64
gnat-srpm-macros-6-3.fc39.noarch
go-srpm-macros-3.3.1-1.fc40.noarch
grep-3.11-5.fc40.x86_64
gzip-1.12-6.fc39.x86_64
info-7.1-1.fc40.x86_64
jansson-2.13.1-7.fc39.x86_64
kernel-srpm-macros-1.0-20.fc39.noarch
keyutils-libs-1.6.3-1.fc40.x86_64
krb5-libs-1.21.2-3.fc40.x86_64
libacl-2.3.2-1.fc40.x86_64
libarchive-3.7.2-1.fc40.x86_64
libattr-2.5.2-1.fc40.x86_64
libblkid-2.39.3-4.fc40.x86_64
libbrotli-1.1.0-1.fc40.x86_64
libcap-2.69-1.fc40.x86_64
libcap-ng-0.8.4-2.fc40.x86_64
libcom_err-1.47.0-2.fc39.x86_64
libcurl-8.5.0-2.fc40.x86_64
libeconf-0.5.2-1.fc40.x86_64
libevent-2.1.12-9.fc39.x86_64
libfdisk-2.39.3-4.fc40.x86_64
libffi-3.4.4-5.fc40.x86_64
libgcc-14.0.1-0.3.fc40.x86_64
libgomp-14.0.1-0.3.fc40.x86_64
libidn2-2.3.4-3.fc39.x86_64
libmount-2.39.3-4.fc40.x86_64
libnghttp2-1.59.0-1.fc40.x86_64
libnsl2-2.0.1-1.fc40.x86_64
libpkgconf-1.9.5-2.fc39.x86_64
libpsl-0.21.5-1.fc40.x86_64
libpwquality-1.4.5-6.fc39.x86_64
libselinux-3.6-2.fc40.x86_64
libsemanage-3.6-1.fc40.x86_64
libsepol-3.6-1.fc40.x86_64
libsmartcols-2.39.3-4.fc40.x86_64
libssh-0.10.6-2.fc40.x86_64
libssh-config-0.10.6-2.fc40.noarch
libstdc++-14.0.1-0.3.fc40.x86_64
libtasn1-4.19.0-3.fc39.x86_64
libtirpc-1.3.4-1.rc1.fc40.x86_64
libunistring-1.1-5.fc40.x86_64
libutempter-1.2.1-10.fc39.x86_64
libuuid-2.39.3-4.fc40.x86_64
libverto-0.3.2-6.fc39.x86_64
libxcrypt-4.4.36-4.fc40.x86_64
libxml2-2.12.4-1.fc40.x86_64
libzstd-1.5.5-4.fc39.x86_64
lua-libs-5.4.6-3.fc39.x86_64
lua-srpm-macros-1-9.fc39.noarch
lz4-libs-1.9.4-4.fc39.x86_64
mpfr-4.2.1-1.fc40.x86_64
ncurses-base-6.4-9.20240113.fc40.noarch
ncurses-libs-6.4-9.20240113.fc40.x86_64
ocaml-srpm-macros-9-1.fc40.noarch
openblas-srpm-macros-2-14.fc39.noarch
openldap-2.6.6-1.fc39.x86_64
openssl-libs-3.1.4-1.fc40.x86_64
p11-kit-0.25.3-1.fc40.x86_64
p11-kit-trust-0.25.3-1.fc40.x86_64
package-notes-srpm-macros-0.5-9.fc39.noarch
pam-1.6.0-1.fc40.x86_64
pam-libs-1.6.0-1.fc40.x86_64
patch-2.7.6-22.fc39.x86_64
pcre2-10.42-2.fc40.x86_64
pcre2-syntax-10.42-2.fc40.noarch
perl-srpm-macros-1-51.fc39.noarch
pkgconf-1.9.5-2.fc39.x86_64
pkgconf-m4-1.9.5-2.fc39.noarch
pkgconf-pkg-config-1.9.5-2.fc39.x86_64
popt-1.19-3.fc39.x86_64
publicsuffix-list-dafsa-20240107-1.fc40.noarch
pyproject-srpm-macros-1.12.0-1.fc40.noarch
python-srpm-macros-3.12-7.fc40.noarch
qt5-srpm-macros-5.15.12-1.fc40.noarch
qt6-srpm-macros-6.6.1-3.fc40.noarch
readline-8.2-7.fc40.x86_64
redhat-rpm-config-280-1.fc40.noarch
rpm-4.19.1-2.fc40.x86_64
rpm-build-4.19.1-2.fc40.x86_64
rpm-build-libs-4.19.1-2.fc40.x86_64
rpm-libs-4.19.1-2.fc40.x86_64
rpm-sequoia-1.6.0-1.fc40.x86_64
rust-srpm-macros-25.2-2.fc40.noarch
sed-4.8-14.fc39.x86_64
setup-2.14.5-1.fc40.noarch
shadow-utils-4.14.0-2.fc40.x86_64
sqlite-libs-3.45.0-1.fc40.x86_64
systemd-libs-255.3-1.fc40.x86_64
tar-1.35-2.fc40.x86_64
unzip-6.0-62.fc39.x86_64
util-linux-2.39.3-4.fc40.x86_64
util-linux-core-2.39.3-4.fc40.x86_64
which-2.21-40.fc39.x86_64
xxhash-libs-0.8.2-1.fc39.x86_64
xz-5.4.5-1.fc40.x86_64
xz-libs-5.4.5-1.fc40.x86_64
zig-srpm-macros-1-1.fc40.noarch
zip-3.0-39.fc40.x86_64
zlib-ng-compat-2.1.6-1.fc40.x86_64
zstd-1.5.5-4.fc39.x86_64
Start: buildsrpm
Start: rpmbuild -bs
warning: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N)
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1706313600
Wrote: /builddir/build/SRPMS/seqan-1.4.2-53.fc40.src.rpm

RPM build warnings:
    %patchN is deprecated (2 usages found), use %patch N (or %patch -P N)
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1706326045.829450/root/var/log/dnf5.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-gcthih1n/seqan/seqan.spec) Config(child) 1 minutes 2 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/seqan-1.4.2-53.fc40.src.rpm)  Config(fedora-rawhide-x86_64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1706326045.829450/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1706326045.829450/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1706326045.829450/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.1-2.fc40.x86_64
  rpm-sequoia-1.5.0-2.fc40.x86_64
  python3-dnf-4.18.2-1.fc40.noarch
  yum-4.18.2-1.fc40.noarch
  dnf5-5.1.11-1.fc40.x86_64
  dnf5-plugins-5.1.11-1.fc40.x86_64
Finish: chroot init
Start: build phase for seqan-1.4.2-53.fc40.src.rpm
Start: build setup for seqan-1.4.2-53.fc40.src.rpm
warning: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N)
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1706313600
Wrote: /builddir/build/SRPMS/seqan-1.4.2-53.fc40.src.rpm

RPM build warnings:
    %patchN is deprecated (2 usages found), use %patch N (or %patch -P N)
Updating and loading repositories:
 Copr repository                        100% |  21.6 KiB/s |   1.5 KiB |  00m00s
 fedora                                 100% |  76.1 KiB/s |  22.6 KiB |  00m00s
 Additional repo http_kojipkgs_fedorapr 100% | 206.2 KiB/s |   4.1 KiB |  00m00s
Repositories loaded.
Package                      Arch   Version                          Repository                                                         Size
Installing:                                                                                                                                 
 boost-devel                 x86_64 1.83.0-2.fc40                    copr_base                                                     143.0 MiB
 bzip2-devel                 x86_64 1.0.8-16.fc39                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 309.8 KiB
 cmake                       x86_64 3.27.7-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  30.6 MiB
 coin-or-lemon-devel         x86_64 1.3.1-29.fc40                    copr_base                                                       2.5 MiB
 gcc                         x86_64 14.0.1-0.3.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103.2 MiB
 gcc-c++                     x86_64 14.0.1-0.3.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.9 MiB
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Installing dependencies:                                                                                                                    
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 boost                       x86_64 1.83.0-2.fc40                    copr_base                                                       1.3 KiB
 boost-atomic                x86_64 1.83.0-2.fc40                    copr_base                                                      20.9 KiB
 boost-chrono                x86_64 1.83.0-2.fc40                    copr_base                                                      37.6 KiB
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 boost-context               x86_64 1.83.0-2.fc40                    copr_base                                                      16.5 KiB
 boost-contract              x86_64 1.83.0-2.fc40                    copr_base                                                     103.2 KiB
 boost-coroutine             x86_64 1.83.0-2.fc40                    copr_base                                                      21.1 KiB
 boost-date-time             x86_64 1.83.0-2.fc40                    copr_base                                                      16.3 KiB
 boost-fiber                 x86_64 1.83.0-2.fc40                    copr_base                                                      82.8 KiB
 boost-filesystem            x86_64 1.83.0-2.fc40                    copr_base                                                     147.6 KiB
 boost-graph                 x86_64 1.83.0-2.fc40                    copr_base                                                     342.4 KiB
 boost-iostreams             x86_64 1.83.0-2.fc40                    copr_base                                                      94.7 KiB
 boost-json                  x86_64 1.83.0-2.fc40                    copr_base                                                     325.2 KiB
 boost-locale                x86_64 1.83.0-2.fc40                    copr_base                                                     606.2 KiB
 boost-log                   x86_64 1.83.0-2.fc40                    copr_base                                                       1.5 MiB
 boost-math                  x86_64 1.83.0-2.fc40                    copr_base                                                     647.0 KiB
 boost-nowide                x86_64 1.83.0-2.fc40                    copr_base                                                      24.9 KiB
 boost-numpy3                x86_64 1.83.0-2.fc40                    copr_base                                                      57.6 KiB
 boost-program-options       x86_64 1.83.0-2.fc40                    copr_base                                                     272.7 KiB
 boost-python3               x86_64 1.83.0-2.fc40                    copr_base                                                     250.4 KiB
 boost-random                x86_64 1.83.0-2.fc40                    copr_base                                                      29.7 KiB
 boost-regex                 x86_64 1.83.0-2.fc40                    copr_base                                                     271.0 KiB
 boost-serialization         x86_64 1.83.0-2.fc40                    copr_base                                                     437.6 KiB
 boost-stacktrace            x86_64 1.83.0-2.fc40                    copr_base                                                      64.1 KiB
 boost-system                x86_64 1.83.0-2.fc40                    copr_base                                                      16.3 KiB
 boost-test                  x86_64 1.83.0-2.fc40                    copr_base                                                     639.0 KiB
 boost-thread                x86_64 1.83.0-2.fc40                    copr_base                                                     136.8 KiB
 boost-timer                 x86_64 1.83.0-2.fc40                    copr_base                                                      25.1 KiB
 boost-type_erasure          x86_64 1.83.0-2.fc40                    copr_base                                                      58.2 KiB
 boost-wave                  x86_64 1.83.0-2.fc40                    copr_base                                                     635.9 KiB
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 coin-or-Clp                 x86_64 1.17.6-17.fc40                   copr_base                                                       2.4 MiB
 coin-or-CoinUtils           x86_64 2.11.4-12.fc40                   copr_base                                                       1.2 MiB
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 flexiblas                   x86_64 3.4.1-3.fc40                     copr_base                                                      46.7 KiB
 flexiblas-netlib            x86_64 3.4.1-3.fc40                     copr_base                                                      10.2 MiB
 flexiblas-openblas-openmp   x86_64 3.4.1-3.fc40                     copr_base                                                      39.3 KiB
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 freetype-devel              x86_64 2.13.2-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.8 MiB
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 gecode                      x86_64 6.2.0-13.fc39                    copr_base                                                      14.2 MiB
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 glpk                        x86_64 5.0-10.fc40                      copr_base                                                     870.8 KiB
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 graphite2                   x86_64 1.3.14-15.fc40                   copr_base                                                     192.0 KiB
 graphite2-devel             x86_64 1.3.14-15.fc40                   copr_base                                                      49.1 KiB
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 libicu                      x86_64 73.2-3.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  36.3 MiB
 libicu-devel                x86_64 73.2-3.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.5 MiB
 libinput                    x86_64 1.25.0-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 552.9 KiB
 libjpeg-turbo               x86_64 2.1.4-5.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 656.5 KiB
 liblerc                     x86_64 4.0.0-4.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 591.3 KiB
 libmng                      x86_64 2.0.3-19.fc39                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 537.9 KiB
 libmount-devel              x86_64 2.39.3-4.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.5 KiB
 libmpc                      x86_64 1.3.1-3.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 164.6 KiB
 libnauty                    x86_64 2.8.8-1.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.6 MiB
 libpciaccess                x86_64 0.16-9.fc39                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  48.5 KiB
 libpng                      x86_64 2:1.6.40-1.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 237.7 KiB
 libpng-devel                x86_64 2:1.6.40-1.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 885.4 KiB
 libproxy                    x86_64 0.5.3-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 111.1 KiB
 libquadmath                 x86_64 14.0.1-0.3.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 329.9 KiB
 libquadmath-devel           x86_64 14.0.1-0.3.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  21.6 KiB
 libselinux-devel            x86_64 3.6-2.fc40                       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 126.1 KiB
 libsepol-devel              x86_64 3.6-1.fc40                       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 120.2 KiB
 libstdc++-devel             x86_64 14.0.1-0.3.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  14.6 MiB
 libtiff                     x86_64 4.5.0-3.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 libtool-ltdl                x86_64 2.4.7-10.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  66.2 KiB
 libuuid-devel               x86_64 2.39.3-4.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  13.5 KiB
 libuv                       x86_64 1:1.47.0-3.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 535.4 KiB
 libwacom                    x86_64 2.9.0-1.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  94.2 KiB
 libwacom-data               noarch 2.9.0-1.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 605.9 KiB
 libwayland-client           x86_64 1.22.0-2.fc39                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  70.0 KiB
 libwayland-server           x86_64 1.22.0-2.fc39                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  90.5 KiB
 libwebp                     x86_64 1.3.2-4.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 793.6 KiB
 libxcb                      x86_64 1.16-2.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 libxcb-devel                x86_64 1.16-2.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.7 MiB
 libxcrypt-devel             x86_64 4.4.36-4.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  30.3 KiB
 libxkbcommon                x86_64 1.6.0-2.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 328.3 KiB
 libxkbcommon-x11            x86_64 1.6.0-2.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  39.6 KiB
 libxml2-devel               x86_64 2.12.4-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.4 MiB
 libxshmfence                x86_64 1.3.2-1.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  15.3 KiB
 lksctp-tools                x86_64 1.0.19-4.fc39                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 269.1 KiB
 llvm                        x86_64 17.0.6-2.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 113.7 MiB
 llvm-googletest             x86_64 17.0.6-2.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.1 MiB
 llvm-libs                   x86_64 17.0.6-2.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 117.7 MiB
 llvm-static                 x86_64 17.0.6-2.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 260.3 MiB
 llvm-test                   x86_64 17.0.6-2.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 lua                         x86_64 5.4.6-3.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 601.6 KiB
 lua-filesystem              x86_64 1.8.0-9.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  64.8 KiB
 lua-json                    noarch 1.3.4-4.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  59.3 KiB
 lua-lpeg                    x86_64 1.0.2-11.fc39                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 176.7 KiB
 lua-posix                   x86_64 36.2.1-3.fc39                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 613.3 KiB
 lua-term                    x86_64 0.08-1.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  26.8 KiB
 mesa-libEGL                 x86_64 24.0.0~rc2-4.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 279.8 KiB
 mesa-libGL                  x86_64 24.0.0~rc2-4.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 454.0 KiB
 mesa-libGLU                 x86_64 9.0.3-1.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 357.8 KiB
 mesa-libGLU-devel           x86_64 9.0.3-1.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  17.0 KiB
 mesa-libgbm                 x86_64 24.0.0~rc2-4.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  65.3 KiB
 mesa-libglapi               x86_64 24.0.0~rc2-4.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 168.5 KiB
 metis                       x86_64 5.1.0.3-3.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 976.6 KiB
 mkfontscale                 x86_64 1.2.2-4.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  53.1 KiB
 mockito                     noarch 5.8.0-1.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 702.9 KiB
 mp                          x86_64 3.1.0-44.20200303git7fd4828.fc40 copr_base                                                       3.1 MiB
 mpdecimal                   x86_64 2.5.1-7.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 200.8 KiB
 mtdev                       x86_64 1.1.6-6.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  25.2 KiB
 ncurses-c++-libs            x86_64 6.4-9.20240113.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 161.7 KiB
 ncurses-devel               x86_64 6.4-9.20240113.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 859.5 KiB
 nettle                      x86_64 3.9.1-2.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 793.9 KiB
 nspr                        x86_64 4.35.0-17.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 320.4 KiB
 nss                         x86_64 3.96.1-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 nss-softokn                 x86_64 3.96.1-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 nss-softokn-freebl          x86_64 3.96.1-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 819.6 KiB
 nss-sysinit                 x86_64 3.96.1-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  18.2 KiB
 nss-util                    x86_64 3.96.1-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 222.1 KiB
 objectweb-asm               noarch 9.6-1.fc40                       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 398.8 KiB
 objenesis                   noarch 3.3-4.fc40                       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 175.5 KiB
 openblas                    x86_64 0.3.26-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  96.0 KiB
 openblas-openmp             x86_64 0.3.26-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  38.3 MiB
 opentest4j                  noarch 1.3.0-2.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  32.2 KiB
 pcre2-devel                 x86_64 10.42-2.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 pcre2-utf16                 x86_64 10.42-2.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 566.1 KiB
 pcre2-utf32                 x86_64 10.42-2.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 538.0 KiB
 pixman                      x86_64 0.43.0-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694.1 KiB
 procps-ng                   x86_64 4.0.4-1.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 pyproject-rpm-macros        noarch 1.12.0-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  98.8 KiB
 python-pip-wheel            noarch 23.3.2-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 python-rpm-macros           noarch 3.12-7.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  22.1 KiB
 python3                     x86_64 3.12.1-2.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  31.8 KiB
 python3-libs                x86_64 3.12.1-2.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  41.7 MiB
 python3-numpy               x86_64 1:1.26.2-4.fc40                  copr_base                                                      44.0 MiB
 python3-packaging           noarch 23.2-2.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 421.1 KiB
 python3-rpm-generators      noarch 14-8.fc40                        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  82.3 KiB
 python3-rpm-macros          noarch 3.12-7.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.4 KiB
 qt                          x86_64 1:4.8.7-74.fc39                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  18.1 MiB
 qt-common                   noarch 1:4.8.7-74.fc39                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 qt-settings                 noarch 39.1-3.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 KiB
 qt-x11                      x86_64 1:4.8.7-74.fc39                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.2 MiB
 qt5-qtbase                  x86_64 5.15.12-1.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  10.0 MiB
 qt5-qtbase-common           noarch 5.15.12-1.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  78.0   B
 qt5-qtbase-gui              x86_64 5.15.12-1.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  20.2 MiB
 rhash                       x86_64 1.4.3-3.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 352.5 KiB
 scotch                      x86_64 7.0.4-2.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 721.6 KiB
 scotch-devel                x86_64 7.0.4-2.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  95.6 KiB
 suitesparse                 x86_64 5.13.0-4.fc40                    copr_base                                                       3.7 MiB
 sysprof-capture-devel       x86_64 45.1-1.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 252.4 KiB
 tcl                         x86_64 1:8.6.13-1.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.2 MiB
 ttmkfdir                    x86_64 3.0.9-69.fc39                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 122.6 KiB
 tzdata                      noarch 2023d-2.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 tzdata-java                 noarch 2023d-2.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 101.5 KiB
 unixODBC                    x86_64 2.3.12-2.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 vim-filesystem              noarch 2:9.1.031-1.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.0   B
 xcb-util                    x86_64 0.4.1-3.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  34.3 KiB
 xcb-util-image              x86_64 0.4.1-3.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  22.1 KiB
 xcb-util-keysyms            x86_64 0.4.1-3.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  16.7 KiB
 xcb-util-renderutil         x86_64 0.3.10-3.fc39                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  28.4 KiB
 xcb-util-wm                 x86_64 0.4.2-3.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  85.2 KiB
 xkeyboard-config            noarch 2.40-2.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.6 MiB
 xml-common                  noarch 0.6.3-62.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  78.4 KiB
 xorg-x11-fonts-Type1        noarch 7.5-37.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 863.3 KiB
 xorg-x11-proto-devel        noarch 2023.2-3.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 xz-devel                    x86_64 5.4.5-1.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 255.8 KiB

Transaction Summary:
 Installing:      286 packages

Total size of inbound packages is 415 MiB. Need to download 415 MiB.
After this operation 2 GiB will be used (install 2 GiB, remove 0 B).
[  1/286] bzip2-devel-0:1.0.8-16.fc39.x 100% |   5.2 MiB/s | 213.7 KiB |  00m00s
[  2/286] cmake-0:3.27.7-1.fc40.x86_64  100% | 112.9 MiB/s |   8.0 MiB |  00m00s
[  3/286] coin-or-lemon-devel-0:1.3.1-2 100% |   8.8 MiB/s | 287.0 KiB |  00m00s
[  4/286] gcc-c++-0:14.0.1-0.3.fc40.x86 100% | 207.2 MiB/s |  14.1 MiB |  00m00s
[  5/286] java-1.8.0-openjdk-devel-1:1. 100% | 197.1 MiB/s |   9.3 MiB |  00m00s
[  6/286] libstdc++-static-0:14.0.1-0.3 100% |  74.4 MiB/s | 914.8 KiB |  00m00s
[  7/286] gcc-0:14.0.1-0.3.fc40.x86_64  100% | 219.6 MiB/s |  36.7 MiB |  00m00s
[  8/286] make-1:4.4.1-2.fc39.x86_64    100% |  47.3 MiB/s | 581.2 KiB |  00m00s
[  9/286] llvm-devel-0:17.0.6-2.fc40.x8 100% |  61.3 MiB/s |   3.6 MiB |  00m00s
[ 10/286] python3-devel-0:3.12.1-2.fc40 100% |  22.3 MiB/s | 273.9 KiB |  00m00s
[ 11/286] python3-setuptools-0:68.2.2-1 100% | 108.2 MiB/s |   1.4 MiB |  00m00s
[ 12/286] zlib-ng-compat-devel-0:2.1.6- 100% |   3.5 MiB/s |  36.2 KiB |  00m00s
[ 13/286] boost-0:1.83.0-2.fc40.x86_64  100% |   4.7 MiB/s |  14.5 KiB |  00m00s
[ 14/286] boost-numpy3-0:1.83.0-2.fc40. 100% |   9.8 MiB/s |  30.2 KiB |  00m00s
[ 15/286] qt-devel-1:4.8.7-74.fc39.x86_ 100% | 199.8 MiB/s |   9.8 MiB |  00m00s
[ 16/286] coin-or-lemon-0:1.3.1-29.fc40 100% |   4.8 MiB/s |  83.2 KiB |  00m00s
[ 17/286] libstdc++-devel-0:14.0.1-0.3. 100% | 128.7 MiB/s |   2.6 MiB |  00m00s
[ 18/286] boost-atomic-0:1.83.0-2.fc40. 100% |   3.3 MiB/s |  20.4 KiB |  00m00s
[ 19/286] cpp-0:14.0.1-0.3.fc40.x86_64  100% | 224.1 MiB/s |  11.9 MiB |  00m00s
[ 20/286] boost-devel-0:1.83.0-2.fc40.x 100% |  30.8 MiB/s |  11.8 MiB |  00m00s
[ 21/286] boost-chrono-0:1.83.0-2.fc40. 100% | 764.0 KiB/s |  26.7 KiB |  00m00s
[ 22/286] boost-container-0:1.83.0-2.fc 100% |   3.6 MiB/s |  40.9 KiB |  00m00s
[ 23/286] boost-context-0:1.83.0-2.fc40 100% |   5.7 MiB/s |  17.4 KiB |  00m00s
[ 24/286] boost-contract-0:1.83.0-2.fc4 100% |   9.2 MiB/s |  46.9 KiB |  00m00s
[ 25/286] boost-coroutine-0:1.83.0-2.fc 100% |   2.9 MiB/s |  20.8 KiB |  00m00s
[ 26/286] boost-date-time-0:1.83.0-2.fc 100% |   4.0 MiB/s |  16.2 KiB |  00m00s
[ 27/286] boost-fiber-0:1.83.0-2.fc40.x 100% |   8.4 MiB/s |  43.1 KiB |  00m00s
[ 28/286] boost-iostreams-0:1.83.0-2.fc 100% |  13.7 MiB/s |  42.1 KiB |  00m00s
[ 29/286] boost-filesystem-0:1.83.0-2.f 100% |  11.4 MiB/s |  70.1 KiB |  00m00s
[ 30/286] boost-graph-0:1.83.0-2.fc40.x 100% |  21.3 MiB/s | 152.7 KiB |  00m00s
[ 31/286] boost-locale-0:1.83.0-2.fc40. 100% |  41.9 MiB/s | 214.5 KiB |  00m00s
[ 32/286] boost-math-0:1.83.0-2.fc40.x8 100% |  26.3 MiB/s | 215.7 KiB |  00m00s
[ 33/286] boost-log-0:1.83.0-2.fc40.x86 100% |  32.1 MiB/s | 492.4 KiB |  00m00s
[ 34/286] boost-json-0:1.83.0-2.fc40.x8 100% |   7.9 MiB/s | 145.3 KiB |  00m00s
[ 35/286] boost-nowide-0:1.83.0-2.fc40. 100% |   3.0 MiB/s |  21.3 KiB |  00m00s
[ 36/286] boost-random-0:1.83.0-2.fc40. 100% |   8.1 MiB/s |  24.9 KiB |  00m00s
[ 37/286] boost-regex-0:1.83.0-2.fc40.x 100% |  18.3 MiB/s | 112.1 KiB |  00m00s
[ 38/286] boost-python3-0:1.83.0-2.fc40 100% |   5.9 MiB/s |  97.1 KiB |  00m00s
[ 39/286] boost-program-options-0:1.83. 100% |   5.4 MiB/s | 110.3 KiB |  00m00s
[ 40/286] boost-stacktrace-0:1.83.0-2.f 100% |  10.1 MiB/s |  31.0 KiB |  00m00s
[ 41/286] boost-serialization-0:1.83.0- 100% |  18.9 MiB/s | 135.3 KiB |  00m00s
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[206/286] python3-numpy-1:1.26.2-4.fc40 100% |  31.3 MiB/s |   7.2 MiB |  00m00s
[207/286] pcre2-devel-0:10.42-2.fc40.x8 100% |  30.8 MiB/s | 473.3 KiB |  00m00s
[208/286] python3-packaging-0:23.2-2.fc 100% |  10.3 MiB/s | 115.5 KiB |  00m00s
[209/286] gettext-libs-0:0.22-2.fc39.x8 100% |  45.7 MiB/s | 327.5 KiB |  00m00s
[210/286] sysprof-capture-devel-0:45.1- 100% |   6.5 MiB/s |  53.4 KiB |  00m00s
[211/286] gettext-runtime-0:0.22-2.fc39 100% |  10.8 MiB/s | 110.2 KiB |  00m00s
[212/286] avahi-libs-0:0.8-24.fc39.x86_ 100% |   9.3 MiB/s |  66.8 KiB |  00m00s
[213/286] lua-0:5.4.6-3.fc39.x86_64     100% |  26.6 MiB/s | 190.9 KiB |  00m00s
[214/286] lua-posix-0:36.2.1-3.fc39.x86 100% |  18.9 MiB/s | 135.4 KiB |  00m00s
[215/286] emacs-filesystem-1:29.2-2.fc4 100% |   2.5 MiB/s |   7.6 KiB |  00m00s
[216/286] vim-filesystem-2:9.1.031-1.fc 100% |   4.3 MiB/s |  17.5 KiB |  00m00s
[217/286] pixman-0:0.43.0-1.fc40.x86_64 100% |  56.2 MiB/s | 287.6 KiB |  00m00s
[218/286] gsl-0:2.7.1-5.fc39.x86_64     100% |  92.0 MiB/s |   1.1 MiB |  00m00s
[219/286] jacop-0:4.9.0-2.fc39.noarch   100% | 111.5 MiB/s |   1.7 MiB |  00m00s
[220/286] unixODBC-0:2.3.12-2.fc40.x86_ 100% |  50.9 MiB/s | 469.4 KiB |  00m00s
[221/286] gecode-0:6.2.0-13.fc39.x86_64 100% | 110.9 MiB/s |   3.2 MiB |  00m00s
[222/286] qt5-qtbase-0:5.15.12-1.fc40.x 100% | 110.3 MiB/s |   3.5 MiB |  00m00s
[223/286] qt5-qtbase-gui-0:5.15.12-1.fc 100% | 139.4 MiB/s |   6.4 MiB |  00m00s
[224/286] openblas-openmp-0:0.3.26-1.fc 100% | 109.3 MiB/s |   5.0 MiB |  00m00s
[225/286] glx-utils-0:9.0.0-4.fc40.x86_ 100% |   3.2 MiB/s |  73.0 KiB |  00m00s
[226/286] libxkbcommon-0:1.6.0-2.fc40.x 100% |  19.8 MiB/s | 141.6 KiB |  00m00s
[227/286] libdrm-0:2.4.120-1.fc40.x86_6 100% |  21.8 MiB/s | 156.6 KiB |  00m00s
[228/286] libinput-0:1.25.0-1.fc40.x86_ 100% |  22.2 MiB/s | 204.5 KiB |  00m00s
[229/286] libxkbcommon-x11-0:1.6.0-2.fc 100% |   4.2 MiB/s |  21.7 KiB |  00m00s
[230/286] xcb-util-image-0:0.4.1-3.fc39 100% |   2.3 MiB/s |  18.6 KiB |  00m00s
[231/286] xcb-util-keysyms-0:0.4.1-3.fc 100% |   2.0 MiB/s |  14.0 KiB |  00m00s
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[233/286] xcb-util-renderutil-0:0.3.10- 100% |   1.4 MiB/s |  17.1 KiB |  00m00s
[234/286] double-conversion-0:3.3.0-1.f 100% |   5.4 MiB/s |  50.0 KiB |  00m00s
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[236/286] pcre2-utf16-0:10.42-2.fc40.x8 100% |  34.6 MiB/s | 212.6 KiB |  00m00s
[237/286] libproxy-0:0.5.3-3.fc40.x86_6 100% |   7.9 MiB/s |  48.4 KiB |  00m00s
[238/286] crypto-policies-scripts-0:202 100% |  20.4 MiB/s | 104.7 KiB |  00m00s
[239/286] openblas-0:0.3.26-1.fc40.x86_ 100% |   6.3 MiB/s |  38.4 KiB |  00m00s
[240/286] pcre2-utf32-0:10.42-2.fc40.x8 100% |  27.9 MiB/s | 200.1 KiB |  00m00s
[241/286] nss-softokn-0:3.96.1-1.fc40.x 100% |  50.5 MiB/s | 413.8 KiB |  00m00s
[242/286] nss-sysinit-0:3.96.1-1.fc40.x 100% |   2.6 MiB/s |  18.4 KiB |  00m00s
[243/286] nspr-0:4.35.0-17.fc40.x86_64  100% |  16.8 MiB/s | 137.7 KiB |  00m00s
[244/286] nss-util-0:3.96.1-1.fc40.x86_ 100% |  12.1 MiB/s |  87.1 KiB |  00m00s
[245/286] libwayland-server-0:1.22.0-2. 100% |   5.1 MiB/s |  41.9 KiB |  00m00s
[246/286] libXxf86vm-0:1.1.5-4.fc40.x86 100% |   1.7 MiB/s |  17.5 KiB |  00m00s
[247/286] libwayland-client-0:1.22.0-2. 100% |   5.5 MiB/s |  33.7 KiB |  00m00s
[248/286] libxshmfence-0:1.3.2-1.fc40.x 100% |   1.2 MiB/s |  11.8 KiB |  00m00s
[249/286] xkeyboard-config-0:2.40-2.fc4 100% |  99.5 MiB/s | 916.8 KiB |  00m00s
[250/286] libsepol-devel-0:3.6-1.fc40.x 100% |   6.5 MiB/s |  40.1 KiB |  00m00s
[251/286] duktape-0:2.7.0-5.fc39.x86_64 100% |  18.4 MiB/s | 169.9 KiB |  00m00s
[252/286] libevdev-0:1.13.1-2.fc39.x86_ 100% |   5.4 MiB/s |  44.1 KiB |  00m00s
[253/286] libwacom-0:2.9.0-1.fc40.x86_6 100% |   6.0 MiB/s |  42.9 KiB |  00m00s
[254/286] mtdev-0:1.1.6-6.fc39.x86_64   100% |   2.8 MiB/s |  20.4 KiB |  00m00s
[255/286] libpciaccess-0:0.16-9.fc39.x8 100% |   2.6 MiB/s |  26.4 KiB |  00m00s
[256/286] mockito-0:5.8.0-1.fc40.noarch 100% |  52.6 MiB/s | 592.1 KiB |  00m00s
[257/286] gettext-envsubst-0:0.22-2.fc3 100% |   5.9 MiB/s |  36.0 KiB |  00m00s
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[259/286] xcb-util-0:0.4.1-3.fc39.x86_6 100% |   2.3 MiB/s |  18.5 KiB |  00m00s
[260/286] byte-buddy-agent-0:1.14.2-4.f 100% |  26.2 MiB/s | 214.9 KiB |  00m00s
[261/286] junit-1:4.13.2-2.fc40.noarch  100% |  28.2 MiB/s | 346.9 KiB |  00m00s
[262/286] byte-buddy-0:1.14.2-4.fc40.no 100% | 139.0 MiB/s |   3.2 MiB |  00m00s
[263/286] objenesis-0:3.3-4.fc40.noarch 100% |  14.1 MiB/s | 115.2 KiB |  00m00s
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[265/286] opentest4j-0:1.3.0-2.fc40.noa 100% |   2.6 MiB/s |  26.4 KiB |  00m00s
[266/286] libgudev-0:238-2.fc39.x86_64  100% |   3.7 MiB/s |  34.5 KiB |  00m00s
[267/286] hamcrest-0:2.2-12.fc40.noarch 100% |  14.6 MiB/s | 119.9 KiB |  00m00s
[268/286] objectweb-asm-0:9.6-1.fc40.no 100% |  29.5 MiB/s | 361.9 KiB |  00m00s
[269/286] javapackages-tools-0:6.2.0-5. 100% |   4.0 MiB/s |  32.6 KiB |  00m00s
[270/286] hwdata-0:0.378-1.fc40.noarch  100% |  83.5 MiB/s |   1.6 MiB |  00m00s
[271/286] lua-filesystem-0:1.8.0-9.fc39 100% |   4.7 MiB/s |  33.7 KiB |  00m00s
[272/286] Lmod-0:8.7.32-1.fc40.x86_64   100% |  19.0 MiB/s | 233.5 KiB |  00m00s
[273/286] lua-json-0:1.3.4-4.fc39.noarc 100% |   2.8 MiB/s |  25.9 KiB |  00m00s
[274/286] lua-term-0:0.08-1.fc40.x86_64 100% |   1.4 MiB/s |  15.7 KiB |  00m00s
[275/286] procps-ng-0:4.0.4-1.fc40.x86_ 100% |  45.0 MiB/s | 368.3 KiB |  00m00s
[276/286] tcl-1:8.6.13-1.fc40.x86_64    100% |  66.8 MiB/s |   1.1 MiB |  00m00s
[277/286] lua-lpeg-0:1.0.2-11.fc39.x86_ 100% |   5.4 MiB/s |  66.6 KiB |  00m00s
[278/286] pyproject-rpm-macros-0:1.12.0 100% |   6.7 MiB/s |  41.4 KiB |  00m00s
[279/286] gcc-plugin-annobin-0:14.0.1-0 100% |   4.2 MiB/s |  34.3 KiB |  00m00s
[280/286] python-rpm-macros-0:3.12-7.fc 100% |   2.2 MiB/s |  18.0 KiB |  00m00s
[281/286] python3-rpm-macros-0:3.12-7.f 100% |   1.8 MiB/s |  12.8 KiB |  00m00s
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[285/286] annobin-docs-0:12.38-1.fc40.n 100% |   9.7 MiB/s |  89.6 KiB |  00m00s
[286/286] java-17-openjdk-headless-1:17 100% | 257.3 MiB/s |  44.5 MiB |  00m00s
--------------------------------------------------------------------------------
[286/286] Total                         100% | 214.2 MiB/s | 414.7 MiB |  00m02s
Running transaction
[  1/288] Verify package files          100% | 222.0   B/s | 286.0   B |  00m01s
>>> Running pre-transaction scriptlet: copy-jdk-configs-0:4.1-3.fc39.noarch
>>> Stop pre-transaction scriptlet: copy-jdk-configs-0:4.1-3.fc39.noarch
>>> Running pre-transaction scriptlet: java-17-openjdk-headless-1:17.0.10.0.7-1.
>>> Stop pre-transaction scriptlet: java-17-openjdk-headless-1:17.0.10.0.7-1.fc4
>>> Running pre-transaction scriptlet: java-1.8.0-openjdk-headless-1:1.8.0.392.b
>>> Stop pre-transaction scriptlet: java-1.8.0-openjdk-headless-1:1.8.0.392.b08-
[  2/288] Prepare transaction           100% |   1.3 KiB/s | 286.0   B |  00m00s
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[ 11/288] Installing expat-0:2.5.0-3.fc 100% | 270.1 MiB/s | 276.6 KiB |  00m00s
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[ 24/288] Installing fonts-filesystem-1 100% |   0.0   B/s | 788.0   B |  00m00s
[ 25/288] Installing libmpc-0:1.3.1-3.f 100% | 162.2 MiB/s | 166.1 KiB |  00m00s
[ 26/288] Installing alsa-lib-0:1.2.10- 100% | 241.6 MiB/s |   1.4 MiB |  00m00s
[ 27/288] Installing dbus-libs-1:1.14.1 100% | 365.2 MiB/s | 373.9 KiB |  00m00s
[ 28/288] Installing boost-context-0:1. 100% |   0.0   B/s |  17.5 KiB |  00m00s
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[ 34/288] Installing libevdev-0:1.13.1- 100% | 120.3 MiB/s | 123.2 KiB |  00m00s
[ 35/288] Installing libxshmfence-0:1.3 100% |   0.0   B/s |  16.1 KiB |  00m00s
[ 36/288] Installing libwayland-server- 100% |  89.5 MiB/s |  91.6 KiB |  00m00s
[ 37/288] Installing pcre2-utf16-0:10.4 100% | 276.8 MiB/s | 566.9 KiB |  00m00s
[ 38/288] Installing lua-posix-0:36.2.1 100% | 153.4 MiB/s | 628.5 KiB |  00m00s
[ 39/288] Installing lua-0:5.4.6-3.fc39 100% | 295.2 MiB/s | 604.7 KiB |  00m00s
[ 40/288] Installing copy-jdk-configs-0 100% |   0.0   B/s |  21.0 KiB |  00m00s
[ 41/288] Installing gettext-libs-0:0.2 100% | 300.4 MiB/s | 922.9 KiB |  00m00s
[ 42/288] Installing graphite2-0:1.3.14 100% | 189.6 MiB/s | 194.2 KiB |  00m00s
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[ 44/288] Installing lksctp-tools-0:1.0 100% | 133.5 MiB/s | 273.5 KiB |  00m00s
[ 45/288] Installing mesa-libglapi-0:24 100% | 165.4 MiB/s | 169.3 KiB |  00m00s
[ 46/288] Installing libXau-0:1.0.11-4. 100% |   0.0   B/s |  68.3 KiB |  00m00s
[ 47/288] Installing libxcb-0:1.16-2.fc 100% | 220.4 MiB/s |   1.1 MiB |  00m00s
[ 48/288] Installing scotch-0:7.0.4-2.f 100% | 353.5 MiB/s | 723.9 KiB |  00m00s
[ 49/288] Installing libtool-ltdl-0:2.4 100% |   0.0   B/s |  67.3 KiB |  00m00s
[ 50/288] Installing libedit-0:3.1-48.2 100% | 247.5 MiB/s | 253.5 KiB |  00m00s
[ 51/288] Installing llvm-libs-0:17.0.6 100% | 441.0 MiB/s | 117.7 MiB |  00m00s
[ 52/288] Installing qt-settings-0:39.1 100% |   0.0   B/s |   1.7 KiB |  00m00s
[ 53/288] Installing libquadmath-0:14.0 100% | 323.3 MiB/s | 331.1 KiB |  00m00s
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[ 55/288] Installing boost-container-0: 100% |  32.5 MiB/s |  66.5 KiB |  00m00s
[ 56/288] Installing libstdc++-devel-0: 100% | 358.5 MiB/s |  14.7 MiB |  00m00s
[ 57/288] Installing boost-json-0:1.83. 100% | 318.4 MiB/s | 326.0 KiB |  00m00s
[ 58/288] Installing boost-wave-0:1.83. 100% | 311.0 MiB/s | 636.9 KiB |  00m00s
[ 59/288] Installing unixODBC-0:2.3.12- 100% | 204.9 MiB/s |   1.2 MiB |  00m00s
[ 60/288] Installing scotch-devel-0:7.0 100% |  97.4 MiB/s |  99.7 KiB |  00m00s
[ 61/288] Installing xcb-util-keysyms-0 100% |   0.0   B/s |  17.8 KiB |  00m00s
[ 62/288] Installing xcb-util-renderuti 100% |   0.0   B/s |  29.8 KiB |  00m00s
[ 63/288] Installing xcb-util-wm-0:0.4. 100% |  85.2 MiB/s |  87.2 KiB |  00m00s
[ 64/288] Installing xcb-util-0:0.4.1-3 100% |   0.0   B/s |  35.7 KiB |  00m00s
[ 65/288] Installing xcb-util-image-0:0 100% |   0.0   B/s |  23.5 KiB |  00m00s
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[ 69/288] Installing lua-term-0:0.08-1. 100% |  28.2 MiB/s |  28.9 KiB |  00m00s
[ 70/288] Installing mesa-libGLU-0:9.0. 100% | 350.2 MiB/s | 358.6 KiB |  00m00s
[ 71/288] Installing pyproject-rpm-macr 100% |  98.4 MiB/s | 100.8 KiB |  00m00s
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[ 76/288] Installing cpp-0:14.0.1-0.3.f 100% | 377.6 MiB/s |  34.7 MiB |  00m00s
[ 77/288] Installing abattis-cantarell- 100% | 189.5 MiB/s | 194.1 KiB |  00m00s
[ 78/288] Installing boost-graph-0:1.83 100% | 335.3 MiB/s | 343.4 KiB |  00m00s
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[ 82/288] Installing boost-locale-0:1.8 100% | 296.5 MiB/s | 607.2 KiB |  00m00s
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[ 85/288] Installing annobin-docs-0:12. 100% |   0.0   B/s |  96.6 KiB |  00m00s
[ 86/288] Installing lua-lpeg-0:1.0.2-1 100% | 174.4 MiB/s | 178.5 KiB |  00m00s
[ 87/288] Installing lua-json-0:1.3.4-4 100% |  61.6 MiB/s |  63.1 KiB |  00m00s
[ 88/288] Installing tcl-1:8.6.13-1.fc4 100% | 304.8 MiB/s |   4.3 MiB |  00m00s
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[ 91/288] Installing Lmod-0:8.7.32-1.fc 100% |  97.2 MiB/s |   1.3 MiB |  00m00s
>>> Running post-install scriptlet: Lmod-0:8.7.32-1.fc40.x86_64
>>> Stop post-install scriptlet: Lmod-0:8.7.32-1.fc40.x86_64
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[100/288] Installing mtdev-0:1.1.6-6.fc 100% |   0.0   B/s |  26.4 KiB |  00m00s
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[110/288] Installing openblas-0:0.3.26- 100% |   0.0   B/s |  97.8 KiB |  00m00s
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[112/288] Installing flexiblas-0:3.4.1- 100% |   0.0   B/s |  47.9 KiB |  00m00s
[113/288] Installing flexiblas-openblas 100% |   0.0   B/s |  40.2 KiB |  00m00s
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[115/288] Installing suitesparse-0:5.13 100% | 246.6 MiB/s |   3.7 MiB |  00m00s
[116/288] Installing glpk-0:5.0-10.fc40 100% | 283.9 MiB/s | 872.2 KiB |  00m00s
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[118/288] Installing coin-or-Osi-0:0.10 100% | 313.3 MiB/s | 962.4 KiB |  00m00s
[119/288] Installing pcre2-utf32-0:10.4 100% | 263.1 MiB/s | 538.9 KiB |  00m00s
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[121/288] Installing libselinux-devel-0 100% |  39.2 MiB/s | 160.6 KiB |  00m00s
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[123/288] Installing gsl-0:2.7.1-5.fc39 100% | 360.5 MiB/s |   3.2 MiB |  00m00s
[124/288] Installing pixman-0:0.43.0-1. 100% | 339.4 MiB/s | 695.2 KiB |  00m00s
[125/288] Installing vim-filesystem-2:9 100% |   4.6 MiB/s |   4.7 KiB |  00m00s
[126/288] Installing emacs-filesystem-1 100% |   0.0   B/s | 544.0   B |  00m00s
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[129/288] Installing nettle-0:3.9.1-2.f 100% | 259.4 MiB/s | 797.0 KiB |  00m00s
[130/288] Installing gnutls-0:3.8.3-2.f 100% | 352.0 MiB/s |   3.2 MiB |  00m00s
[131/288] Installing glib2-0:2.79.1-1.f 100% | 377.8 MiB/s |  14.4 MiB |  00m00s
[132/288] Installing qt-common-1:4.8.7- 100% |  24.2 KiB/s | 124.0   B |  00m00s
>>> Running pre-install scriptlet: qt-1:4.8.7-74.fc39.x86_64
>>> Stop pre-install scriptlet: qt-1:4.8.7-74.fc39.x86_64
[133/288] Installing qt-1:4.8.7-74.fc39 100% | 329.1 MiB/s |  18.1 MiB |  00m00s
>>> Running post-install scriptlet: qt-1:4.8.7-74.fc39.x86_64
>>> Stop post-install scriptlet: qt-1:4.8.7-74.fc39.x86_64
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[135/288] Installing libproxy-0:0.5.3-3 100% | 110.9 MiB/s | 113.5 KiB |  00m00s
[136/288] Installing qt5-qtbase-common- 100% |  69.5 KiB/s | 356.0   B |  00m00s
>>> Running pre-install scriptlet: qt5-qtbase-0:5.15.12-1.fc40.x86_64
>>> Stop pre-install scriptlet: qt5-qtbase-0:5.15.12-1.fc40.x86_64
[137/288] Installing qt5-qtbase-0:5.15. 100% | 245.3 MiB/s |  10.1 MiB |  00m00s
>>> Running post-install scriptlet: qt5-qtbase-0:5.15.12-1.fc40.x86_64
>>> Stop post-install scriptlet: qt5-qtbase-0:5.15.12-1.fc40.x86_64
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[139/288] Installing google-noto-fonts- 100% |   0.0   B/s |  18.1 KiB |  00m00s
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[141/288] Installing default-fonts-core 100% |  17.8 MiB/s |  18.2 KiB |  00m00s
[142/288] Installing lcms2-0:2.16-2.fc4 100% | 206.3 MiB/s | 422.5 KiB |  00m00s
[143/288] Installing libmng-0:2.0.3-19. 100% | 263.9 MiB/s | 540.4 KiB |  00m00s
[144/288] Installing cliquer-libs-0:1.2 100% |  67.6 MiB/s |  69.2 KiB |  00m00s
[145/288] Installing libnauty-0:2.8.8-1 100% | 417.1 MiB/s |   4.6 MiB |  00m00s
[146/288] Installing libwebp-0:1.3.2-4. 100% | 259.7 MiB/s | 797.7 KiB |  00m00s
[147/288] Installing liblerc-0:4.0.0-4. 100% | 289.5 MiB/s | 592.9 KiB |  00m00s
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[149/288] Installing libtiff-0:4.5.0-3. 100% | 374.4 MiB/s |   1.1 MiB |  00m00s
[150/288] Installing xz-devel-0:5.4.5-1 100% | 253.8 MiB/s | 259.9 KiB |  00m00s
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[152/288] Installing libfontenc-0:1.1.7 100% |   0.0   B/s |  70.3 KiB |  00m00s
[153/288] Installing ncurses-c++-libs-0 100% | 159.1 MiB/s | 162.9 KiB |  00m00s
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[155/288] Installing libedit-devel-0:3. 100% |  21.7 MiB/s |  66.8 KiB |  00m00s
[156/288] Installing tzdata-0:2023d-2.f 100% |  59.7 MiB/s |   1.9 MiB |  00m00s
[157/288] Installing python-pip-wheel-0 100% | 506.6 MiB/s |   1.5 MiB |  00m00s
[158/288] Installing mpdecimal-0:2.5.1- 100% | 197.2 MiB/s | 202.0 KiB |  00m00s
[159/288] Installing libb2-0:0.98.1-9.f 100% |  10.5 MiB/s |  43.2 KiB |  00m00s
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[163/288] Installing llvm-0:17.0.6-2.fc 100% | 424.6 MiB/s | 113.8 MiB |  00m00s
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[170/288] Installing crypto-policies-sc 100% | 107.0 MiB/s | 328.6 KiB |  00m00s
[171/288] Installing nss-sysinit-0:3.96 100% |   0.0   B/s |  19.3 KiB |  00m00s
[172/288] Installing nss-0:3.96.1-1.fc4 100% | 155.6 MiB/s |   1.9 MiB |  00m00s
>>> Running post-install scriptlet: nss-0:3.96.1-1.fc40.x86_64
>>> Stop post-install scriptlet: nss-0:3.96.1-1.fc40.x86_64
[173/288] Installing java-17-openjdk-he 100% | 414.7 MiB/s | 186.2 MiB |  00m00s
>>> Running post-install scriptlet: java-17-openjdk-headless-1:17.0.10.0.7-1.fc4
>>> Stop post-install scriptlet: java-17-openjdk-headless-1:17.0.10.0.7-1.fc40.x
[174/288] Installing javapackages-tools 100% |  70.2 MiB/s |  71.9 KiB |  00m00s
[175/288] Installing libwacom-0:2.9.0-1 100% |  94.1 MiB/s |  96.4 KiB |  00m00s
[176/288] Installing libinput-0:1.25.0- 100% |  68.9 MiB/s | 564.6 KiB |  00m00s
>>> Running post-install scriptlet: libinput-0:1.25.0-1.fc40.x86_64
>>> Stop post-install scriptlet: libinput-0:1.25.0-1.fc40.x86_64
[177/288] Installing metis-0:5.1.0.3-3. 100% | 319.4 MiB/s | 981.1 KiB |  00m00s
[178/288] Installing MUMPS-common-0:5.6 100% | 463.4 MiB/s | 949.0 KiB |  00m00s
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[180/288] Installing brotli-0:1.1.0-1.f 100% |   0.0   B/s |  32.4 KiB |  00m00s
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[182/288] Installing rhash-0:1.4.3-3.fc 100% | 174.6 MiB/s | 357.7 KiB |  00m00s
[183/288] Installing libuv-1:1.47.0-3.f 100% | 262.8 MiB/s | 538.2 KiB |  00m00s
[184/288] Installing jsoncpp-0:1.9.5-5. 100% |  41.5 MiB/s | 254.8 KiB |  00m00s
>>> Running pre-install scriptlet: xml-common-0:0.6.3-62.fc40.noarch
>>> Stop pre-install scriptlet: xml-common-0:0.6.3-62.fc40.noarch
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[189/288] Installing kernel-headers-0:6 100% | 205.9 MiB/s |   6.4 MiB |  00m00s
[190/288] Installing gc-0:8.2.2-4.fc39. 100% | 127.4 MiB/s | 260.9 KiB |  00m00s
[191/288] Installing guile22-0:2.2.7-9. 100% | 447.4 MiB/s |  43.8 MiB |  00m00s
[192/288] Installing make-1:4.4.1-2.fc3 100% | 180.8 MiB/s |   1.8 MiB |  00m00s
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[205/288] Installing libXfixes-0:6.0.1- 100% |   0.0   B/s |  31.6 KiB |  00m00s
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[208/288] Installing libXrandr-0:1.5.4- 100% |   0.0   B/s |  53.0 KiB |  00m00s
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[210/288] Installing harfbuzz-0:8.3.0-2 100% | 318.0 MiB/s |   2.5 MiB |  00m00s
[211/288] Installing freetype-0:2.13.2- 100% | 273.5 MiB/s | 840.3 KiB |  00m00s
[212/288] Installing fontconfig-0:2.15. 100% | 771.5 KiB/s | 789.2 KiB |  00m01s
>>> Running post-install scriptlet: fontconfig-0:2.15.0-1.fc40.x86_64
>>> Stop post-install scriptlet: fontconfig-0:2.15.0-1.fc40.x86_64
[213/288] Installing java-1.8.0-openjdk 100% | 236.4 MiB/s | 113.2 MiB |  00m00s
>>> Running post-install scriptlet: java-1.8.0-openjdk-headless-1:1.8.0.392.b08-
>>> Stop post-install scriptlet: java-1.8.0-openjdk-headless-1:1.8.0.392.b08-6.f
[214/288] Installing libXinerama-0:1.1. 100% |  19.6 MiB/s |  20.1 KiB |  00m00s
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[217/288] Installing objenesis-0:3.3-4. 100% | 173.6 MiB/s | 177.7 KiB |  00m00s
[218/288] Installing opentest4j-0:1.3.0 100% |   0.0   B/s |  33.6 KiB |  00m00s
[219/288] Installing hamcrest-0:2.2-12. 100% | 128.0 MiB/s | 131.1 KiB |  00m00s
[220/288] Installing junit-1:4.13.2-2.f 100% | 406.4 MiB/s | 416.2 KiB |  00m00s
[221/288] Installing objectweb-asm-0:9. 100% | 392.0 MiB/s | 401.4 KiB |  00m00s
[222/288] Installing byte-buddy-0:1.14. 100% | 482.5 MiB/s |   3.9 MiB |  00m00s
[223/288] Installing mockito-0:5.8.0-1. 100% | 344.0 MiB/s | 704.4 KiB |  00m00s
[224/288] Installing jacop-0:4.9.0-2.fc 100% | 606.3 MiB/s |   1.8 MiB |  00m00s
[225/288] Installing libXft-0:2.3.8-4.f 100% | 162.0 MiB/s | 165.9 KiB |  00m00s
[226/288] Installing mkfontscale-0:1.2. 100% |  53.3 MiB/s |  54.5 KiB |  00m00s
[227/288] Installing ttmkfdir-0:3.0.9-6 100% | 120.8 MiB/s | 123.7 KiB |  00m00s
[228/288] Installing xorg-x11-fonts-Typ 100% |  22.2 MiB/s | 865.6 KiB |  00m00s
>>> Running post-install scriptlet: xorg-x11-fonts-Type1-0:7.5-37.fc40.noarch
>>> Stop post-install scriptlet: xorg-x11-fonts-Type1-0:7.5-37.fc40.noarch
[229/288] Installing harfbuzz-icu-0:8.3 100% |  15.9 MiB/s |  16.3 KiB |  00m00s
[230/288] Installing libXrandr-devel-0: 100% |  24.1 MiB/s |  24.7 KiB |  00m00s
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[233/288] Installing libXtst-0:1.2.4-4. 100% |   0.0   B/s |  34.6 KiB |  00m00s
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[236/288] Installing libXxf86vm-0:1.1.5 100% |   0.0   B/s |  26.5 KiB |  00m00s
[237/288] Installing mesa-libGL-0:24.0. 100% | 222.1 MiB/s | 455.0 KiB |  00m00s
[238/288] Installing libglvnd-glx-1:1.7 100% | 335.3 MiB/s | 686.6 KiB |  00m00s
[239/288] Installing qt-x11-1:4.8.7-74. 100% | 347.7 MiB/s |  37.2 MiB |  00m00s
[240/288] Installing glx-utils-0:9.0.0- 100% | 218.7 MiB/s | 447.9 KiB |  00m00s
[241/288] Installing qt5-qtbase-gui-0:5 100% | 336.3 MiB/s |  20.2 MiB |  00m00s
[242/288] Installing gecode-0:6.2.0-13. 100% | 404.8 MiB/s |  14.2 MiB |  00m00s
[243/288] Installing mp-0:3.1.0-44.2020 100% | 311.3 MiB/s |   3.1 MiB |  00m00s
[244/288] Installing coin-or-Cbc-0:2.10 100% | 341.2 MiB/s |   2.4 MiB |  00m00s
[245/288] Installing coin-or-Clp-0:1.17 100% | 305.9 MiB/s |   2.4 MiB |  00m00s
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[247/288] Installing coin-or-lemon-0:1. 100% | 260.8 MiB/s | 267.1 KiB |  00m00s
[248/288] Installing libXt-0:1.3.0-1.fc 100% | 212.4 MiB/s | 435.1 KiB |  00m00s
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[250/288] Installing libXcomposite-0:0. 100% |   0.0   B/s |  46.0 KiB |  00m00s
[251/288] Installing java-1.8.0-openjdk 100% | 101.7 MiB/s |   1.1 MiB |  00m00s
>>> Running post-install scriptlet: java-1.8.0-openjdk-1:1.8.0.392.b08-6.fc40.x8
>>> Stop post-install scriptlet: java-1.8.0-openjdk-1:1.8.0.392.b08-6.fc40.x86_6
[252/288] Installing libglvnd-core-deve 100% |  40.1 MiB/s |  41.1 KiB |  00m00s
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[255/288] Installing llvm-googletest-0: 100% | 294.9 MiB/s |   2.1 MiB |  00m00s
[256/288] Installing gl-manpages-0:1.1- 100% |  66.0 MiB/s |   1.1 MiB |  00m00s
[257/288] Installing mesa-libGLU-devel- 100% |  17.1 MiB/s |  17.5 KiB |  00m00s
[258/288] Installing glibc-headers-x86- 100% | 173.3 MiB/s |   2.3 MiB |  00m00s
[259/288] Installing libxcrypt-devel-0: 100% |  31.8 MiB/s |  32.6 KiB |  00m00s
[260/288] Installing glibc-devel-0:2.38 100% |  39.9 MiB/s |  40.8 KiB |  00m00s
[261/288] Installing gcc-0:14.0.1-0.3.f 100% | 378.1 MiB/s | 103.2 MiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
[262/288] Installing gcc-c++-0:14.0.1-0 100% | 338.3 MiB/s |  37.9 MiB |  00m00s
[263/288] Installing libquadmath-devel- 100% |   0.0   B/s |  23.1 KiB |  00m00s
[264/288] Installing boost-test-0:1.83. 100% | 312.6 MiB/s | 640.3 KiB |  00m00s
[265/288] Installing boost-stacktrace-0 100% |  64.5 MiB/s |  66.0 KiB |  00m00s
[266/288] Installing boost-serializatio 100% | 214.4 MiB/s | 439.0 KiB |  00m00s
[267/288] Installing boost-random-0:1.8 100% |   0.0   B/s |  30.7 KiB |  00m00s
[268/288] Installing boost-program-opti 100% | 267.3 MiB/s | 273.8 KiB |  00m00s
[269/288] Installing boost-nowide-0:1.8 100% |  25.3 MiB/s |  25.9 KiB |  00m00s
[270/288] Installing boost-math-0:1.83. 100% | 317.5 MiB/s | 650.3 KiB |  00m00s
[271/288] Installing boost-iostreams-0: 100% |  93.5 MiB/s |  95.7 KiB |  00m00s
[272/288] Installing boost-contract-0:1 100% | 101.7 MiB/s | 104.2 KiB |  00m00s
[273/288] Installing boost-0:1.83.0-2.f 100% |   0.0   B/s |   1.7 KiB |  00m00s
[274/288] Installing bzip2-devel-0:1.0. 100% | 303.5 MiB/s | 310.7 KiB |  00m00s
[275/288] Installing harfbuzz-devel-0:8 100% | 393.5 MiB/s |   5.1 MiB |  00m00s
[276/288] Installing freetype-devel-0:2 100% | 413.5 MiB/s |   7.9 MiB |  00m00s
[277/288] Installing fontconfig-devel-0 100% |  37.1 MiB/s | 151.9 KiB |  00m00s
[278/288] Installing libXft-devel-0:2.3 100% |   6.2 MiB/s |  44.3 KiB |  00m00s
[279/288] Installing qt-devel-1:4.8.7-7 100% | 219.8 MiB/s |  37.1 MiB |  00m00s
[280/288] Installing boost-devel-0:1.83 100% | 268.9 MiB/s | 145.8 MiB |  00m01s
[281/288] Installing gcc-plugin-annobin 100% |   4.4 MiB/s |  58.6 KiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
[282/288] Installing annobin-plugin-gcc 100% |  49.8 MiB/s | 968.3 KiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
[283/288] Installing llvm-devel-0:17.0. 100% | 258.4 MiB/s |  23.8 MiB |  00m00s
>>> Running post-install scriptlet: llvm-devel-0:17.0.6-2.fc40.x86_64
>>> Stop post-install scriptlet: llvm-devel-0:17.0.6-2.fc40.x86_64
[284/288] Installing java-1.8.0-openjdk 100% | 418.3 MiB/s |  41.0 MiB |  00m00s
>>> Running post-install scriptlet: java-1.8.0-openjdk-devel-1:1.8.0.392.b08-6.f
>>> Stop post-install scriptlet: java-1.8.0-openjdk-devel-1:1.8.0.392.b08-6.fc40
[285/288] Installing coin-or-lemon-deve 100% | 314.6 MiB/s |   2.5 MiB |  00m00s
[286/288] Installing python3-devel-0:3. 100% | 159.4 MiB/s |   1.3 MiB |  00m00s
[287/288] Installing python3-setuptools 100% | 233.8 MiB/s |   7.2 MiB |  00m00s
[288/288] Installing libstdc++-static-0 100% |  13.9 MiB/s |   6.8 MiB |  00m00s
>>> Running post-transaction scriptlet: copy-jdk-configs-0:4.1-3.fc39.noarch
>>> Stop post-transaction scriptlet: copy-jdk-configs-0:4.1-3.fc39.noarch
>>> Running post-transaction scriptlet: crypto-policies-scripts-0:20231204-1.git
>>> Stop post-transaction scriptlet: crypto-policies-scripts-0:20231204-1.git1e3
>>> Running post-transaction scriptlet: nss-0:3.96.1-1.fc40.x86_64
>>> Stop post-transaction scriptlet: nss-0:3.96.1-1.fc40.x86_64
>>> Running post-transaction scriptlet: java-17-openjdk-headless-1:17.0.10.0.7-1
>>> Stop post-transaction scriptlet: java-17-openjdk-headless-1:17.0.10.0.7-1.fc
>>> Running post-transaction scriptlet: fontconfig-0:2.15.0-1.fc40.x86_64
>>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-1.fc40.x86_64
>>> Running post-transaction scriptlet: java-1.8.0-openjdk-headless-1:1.8.0.392.
>>> Stop post-transaction scriptlet: java-1.8.0-openjdk-headless-1:1.8.0.392.b08
>>> Running post-transaction scriptlet: java-1.8.0-openjdk-1:1.8.0.392.b08-6.fc4
>>> Stop post-transaction scriptlet: java-1.8.0-openjdk-1:1.8.0.392.b08-6.fc40.x
>>> Running post-transaction scriptlet: java-1.8.0-openjdk-devel-1:1.8.0.392.b08
>>> Stop post-transaction scriptlet: java-1.8.0-openjdk-devel-1:1.8.0.392.b08-6.
>>> Running trigger-install scriptlet: glibc-common-0:2.38.9000-35.fc40.x86_64
>>> Stop trigger-install scriptlet: glibc-common-0:2.38.9000-35.fc40.x86_64
>>> Running trigger-install scriptlet: info-0:7.1-1.fc40.x86_64
>>> Stop trigger-install scriptlet: info-0:7.1-1.fc40.x86_64
>>> Running trigger-install scriptlet: glib2-0:2.79.1-1.fc40.x86_64
>>> Stop trigger-install scriptlet: glib2-0:2.79.1-1.fc40.x86_64
>>> Running trigger-install scriptlet: glib2-0:2.79.1-1.fc40.x86_64
>>> Stop trigger-install scriptlet: glib2-0:2.79.1-1.fc40.x86_64
>>> Running trigger-install scriptlet: fontconfig-0:2.15.0-1.fc40.x86_64
>>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-1.fc40.x86_64
Warning: skipped PGP checks for 286 package(s).
Finish: build setup for seqan-1.4.2-53.fc40.src.rpm
Start: rpmbuild seqan-1.4.2-53.fc40.src.rpm
warning: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N)
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1706313600
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.dPrdW5
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf seqan-1.4.2
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/seqan-src-1.4.2.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd seqan-1.4.2
+ rm -rf /builddir/build/BUILD/seqan-1.4.2-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/seqan-1.4.2-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #0 (seqan-docpath.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 --fuzz=0
Patch #0 (seqan-docpath.patch):
patching file util/cmake/SeqAnBuildSystem.cmake
+ echo 'Patch #1 (seqan-exclude_splazers_fiona_tests.patch):'
Patch #1 (seqan-exclude_splazers_fiona_tests.patch):
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 --fuzz=0
patching file core/apps/splazers/CMakeLists.txt
patching file core/apps/fiona/CMakeLists.txt
+ find . -type f -name '*.h' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.cpp' -exec chmod 0644 '{}' ';'
+ cp -p extras/apps/rep_sep/LICENSE LGPLv3+.txt
+ cp -p core/apps/rabema/LICENSE GPLv3+.txt
+ cp -p LICENSE BSD.txt
+ cp -p extras/apps/seqan_flexbar/INFO extras/apps/seqan_flexbar/README
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.b4wSEZ
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd seqan-1.4.2
+ mkdir -p build/Release
+ pushd build/Release
~/build/BUILD/seqan-1.4.2/build/Release ~/build/BUILD/seqan-1.4.2
+ SEQAN_OPT_FLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC'
+ export 'CXXFLAGS=-std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon'
+ CXXFLAGS='-std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon'
+ export 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -fPIC'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -fPIC'
+ cmake '-DCMAKE_CXX_FLAGS_RELEASE:STRING=-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC' -DCMAKE_INSTALL_PREFIX:PATH=/usr -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_BUILD_TYPE:STRING=Release -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_APPS -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_APP_VERSION:STRING=1.4.2 -DZLIB_INCLUDE_DIR:PATH=/usr/include '-DZLIB_LIBRARY:FILEPATH=-L/usr/lib64 -lz' -DBZIP2_INCLUDE_DIR:PATH=/usr/include '-DBZIP2_LIBRARY:FILEPATH=-L/usr/lib64 -lbz2' -DLEMON_INCLUDE_DIR:PATH=/usr/include '-DLEMON_LIBRARY:FILEPATH=-L/usr/lib64 -lemon' -DBoost_INCLUDE_DIR:PATH=/usr/include -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE ../..
CMake Warning (dev) at CMakeLists.txt:9 (project):
  cmake_minimum_required() should be called prior to this top-level project()
  call.  Please see the cmake-commands(7) manual for usage documentation of
  both commands.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- The C compiler identification is GNU 14.0.1
-- The CXX compiler identification is GNU 14.0.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Deprecation Warning at CMakeLists.txt:16 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Initializing SeqAn Build System...
-- No revision system found.
--   Repository date not determined.
--   Repository revision not determined.
-- Configuring core
CMake Deprecation Warning at core/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


CMake Deprecation Warning at core/apps/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps
CMake Deprecation Warning at core/apps/dfi/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/dfi
-- Looking for include file execinfo.h
-- Looking for include file execinfo.h - found
--   Determined version is 1.4.2
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/dfi/CMakeLists.txt:70 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found PythonInterp: /usr/bin/python3 (found version "3.12.1") 
CMake Deprecation Warning at core/apps/fiona/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/fiona
-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Found Boost: /usr/lib64/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0")  
CMake Deprecation Warning at core/apps/mason/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/mason
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/mason/CMakeLists.txt:76 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/micro_razers/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/micro_razers
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/micro_razers/CMakeLists.txt:73 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/pair_align/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/pair_align
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/pair_align/CMakeLists.txt:63 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/rabema/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/rabema
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/rabema/CMakeLists.txt:101 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/razers/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/razers
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/razers/CMakeLists.txt:81 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/razers2/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/razers2
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/razers2/CMakeLists.txt:82 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/sak/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/sak
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/sak/CMakeLists.txt:78 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/sam2matrix/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/sam2matrix
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/sam2matrix/CMakeLists.txt:66 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/samcat/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/samcat
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/samcat/CMakeLists.txt:66 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/seqan_tcoffee/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/seqan_tcoffee
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/seqan_tcoffee/CMakeLists.txt:65 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/seqcons/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/seqcons
CMake Deprecation Warning at core/apps/snp_store/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/snp_store
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/snp_store/CMakeLists.txt:86 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/splazers/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/splazers
CMake Deprecation Warning at core/apps/stellar/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/stellar
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/stellar/CMakeLists.txt:71 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/tree_recon/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/tree_recon
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/tree_recon/CMakeLists.txt:65 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Configuring extras
CMake Deprecation Warning at extras/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


CMake Deprecation Warning at extras/apps/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps
CMake Deprecation Warning at extras/apps/alf/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/alf
CMake Deprecation Warning at extras/apps/breakpoint_calculator/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/breakpoint_calculator
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/breakpoint_calculator/CMakeLists.txt:81 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/bs_tools/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/bs_tools
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/bs_tools/CMakeLists.txt:109 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/fx_tools/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/fx_tools
CMake Deprecation Warning at extras/apps/gustaf/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/gustaf
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/gustaf/CMakeLists.txt:68 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/insegt/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/insegt
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/insegt/CMakeLists.txt:80 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/mason2/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/mason2
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/mason2/CMakeLists.txt:155 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/ngs_roi/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring sandbox/jagla/apps/ngs_roi
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/ngs_roi/CMakeLists.txt:101 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/param_chooser/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/param_chooser
CMake Deprecation Warning at extras/apps/razers3/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/razers3
-- Performing Test CXX11_FOUND
-- Performing Test CXX11_FOUND - Success
-- Looking for BZ2_bzCompressInit in -L/usr/lib64 -lbz2
-- Looking for BZ2_bzCompressInit in -L/usr/lib64 -lbz2 - found
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/razers3/CMakeLists.txt:108 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/razers3/CMakeLists.txt:112 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/rep_sep/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/rep_sep
CMake Deprecation Warning at extras/apps/searchjoin/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/searchjoin
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/searchjoin/CMakeLists.txt:69 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/seqan_flexbar/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/seqan_flexbar
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/seqan_flexbar/CMakeLists.txt:92 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/sgip/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/sgip
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/sgip/CMakeLists.txt:81 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/variant_comp/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/variant_comp
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/variant_comp/CMakeLists.txt:65 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Configuring docs
CMake Deprecation Warning at docs/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring manual
CMake Deprecation Warning at manual/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Could NOT find Sphinx (missing:  SPHINX_EXECUTABLE) 
--   Sphinx not found, not building sphinx manual as a test.
-- Configuring sandbox
CMake Deprecation Warning at sandbox/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring util/py_lib
CMake Warning (dev) at util/py_lib/CMakeLists.txt:12 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

This warning is for project developers.  Use -Wno-dev to suppress it.

--   Python nosetests ('import nose' failed), cannot add tests for seqan.dox
-- Found Java: /usr/bin/java (found version "17.0.10") 
-- Configuring done (2.2s)
-- Generating done (0.1s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_SKIP_INSTALL_RPATH
    SEQAN_APP_VERSION
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR


-- Build files have been written to: /builddir/build/BUILD/seqan-1.4.2/build/Release
+ make -j1 all
/usr/bin/cmake -S/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles /builddir/build/BUILD/seqan-1.4.2/build/Release//CMakeFiles/progress.marks
make  -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core /builddir/build/BUILD/seqan-1.4.2/build/Release/core/CMakeFiles/seqan_core.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/CMakeFiles/seqan_core.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  0%] Built target seqan_core
make  -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  1%] Building CXX object core/apps/dfi/CMakeFiles/dfi.dir/dfi.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/dfi/CMakeFiles/dfi.dir/dfi.cpp.o -MF CMakeFiles/dfi.dir/dfi.cpp.o.d -o CMakeFiles/dfi.dir/dfi.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:274:34: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  274 | struct LessSubstringEnd : public binary_function<TSubstringEntry, TSubstringEntry, bool >
      |                                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:298:27: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  298 | struct LessRange : public binary_function<TSubstringEntry, TSubstringEntry, bool >
      |                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:315:25: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  315 | struct LessLex : public binary_function<TSubstringEntry, TSubstringEntry, bool >
      |                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = Dfi<PredMinFreq, PredMaxFreq>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = long unsigned int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1871 |                         TSize size = _sortWotdBucket(
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = Dfi<PredMinFreq, PredMaxFreq>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<unsigned char>, Owner<> >, IndexWotd<Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = ParentLinks<Preorder>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1977 |                         while (goDown(it)) ;
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   537 |         goBegin(it);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:847:68:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   847 |                                 case 0: return runDFI<PredMinFreq, PredMaxFreq, unsigned char> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinFreq, PredMaxFreq>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1871 |                         TSize size = _sortWotdBucket(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinFreq, PredMaxFreq>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >, IndexWotd<Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = ParentLinks<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1977 |                         while (goDown(it)) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |         goBegin(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:64:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   848 |                                 case 1: return runDFI<PredMinFreq, PredMaxFreq, AminoAcid> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinFreq, PredMaxFreq>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1871 |                         TSize size = _sortWotdBucket(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinFreq, PredMaxFreq>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >, IndexWotd<Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = ParentLinks<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1977 |                         while (goDown(it)) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |         goBegin(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:58:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   849 |                                 case 2: return runDFI<PredMinFreq, PredMaxFreq, Dna> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = Dfi<PredMinSupp, PredEmerging>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1871 |                         TSize size = _sortWotdBucket(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = Dfi<PredMinSupp, PredEmerging>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<unsigned char>, Owner<> >, IndexWotd<Dfi<PredMinSupp, PredEmerging> > >; TSpec = ParentLinks<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1977 |                         while (goDown(it)) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |         goBegin(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:854:69:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   854 |                                 case 0: return runDFI<PredMinSupp, PredEmerging, unsigned char> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinSupp, PredEmerging>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1871 |                         TSize size = _sortWotdBucket(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinSupp, PredEmerging>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >, IndexWotd<Dfi<PredMinSupp, PredEmerging> > >; TSpec = ParentLinks<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1977 |                         while (goDown(it)) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |         goBegin(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:855:65:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   855 |                                 case 1: return runDFI<PredMinSupp, PredEmerging, AminoAcid> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinSupp, PredEmerging>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1871 |                         TSize size = _sortWotdBucket(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinSupp, PredEmerging>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >, IndexWotd<Dfi<PredMinSupp, PredEmerging> > >; TSpec = ParentLinks<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1977 |                         while (goDown(it)) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |         goBegin(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:856:59:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   856 |                                 case 2: return runDFI<PredMinSupp, PredEmerging, Dna> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = Dfi<PredMinAllSupp, PredEntropy>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1871 |                         TSize size = _sortWotdBucket(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = Dfi<PredMinAllSupp, PredEntropy>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<unsigned char>, Owner<> >, IndexWotd<Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = ParentLinks<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1977 |                         while (goDown(it)) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |         goBegin(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:861:71:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   861 |                                 case 0: return runDFI<PredMinAllSupp, PredEntropy, unsigned char> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinAllSupp, PredEntropy>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1871 |                         TSize size = _sortWotdBucket(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinAllSupp, PredEntropy>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >, IndexWotd<Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = ParentLinks<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1977 |                         while (goDown(it)) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |         goBegin(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:862:67:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   862 |                                 case 1: return runDFI<PredMinAllSupp, PredEntropy, AminoAcid> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinAllSupp, PredEntropy>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1871 |                         TSize size = _sortWotdBucket(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinAllSupp, PredEntropy>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >, IndexWotd<Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = ParentLinks<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1977 |                         while (goDown(it)) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |         goBegin(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:863:61:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   863 |                                 case 2: return runDFI<PredMinAllSupp, PredEntropy, Dna> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<unsigned char>, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:847:68:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   847 |                                 case 0: return runDFI<PredMinFreq, PredMaxFreq, unsigned char> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = int; TEndPos = long unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<unsigned char>, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:847:68:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   847 |                                 case 0: return runDFI<PredMinFreq, PredMaxFreq, unsigned char> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:64:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   848 |                                 case 1: return runDFI<PredMinFreq, PredMaxFreq, AminoAcid> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = int; TEndPos = long unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:64:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   848 |                                 case 1: return runDFI<PredMinFreq, PredMaxFreq, AminoAcid> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:58:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   849 |                                 case 2: return runDFI<PredMinFreq, PredMaxFreq, Dna> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = int; TEndPos = long unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:58:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   849 |                                 case 2: return runDFI<PredMinFreq, PredMaxFreq, Dna> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<unsigned char>, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:854:69:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   854 |                                 case 0: return runDFI<PredMinSupp, PredEmerging, unsigned char> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = int; TEndPos = long unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<unsigned char>, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:854:69:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   854 |                                 case 0: return runDFI<PredMinSupp, PredEmerging, unsigned char> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:855:65:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   855 |                                 case 1: return runDFI<PredMinSupp, PredEmerging, AminoAcid> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = int; TEndPos = long unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:855:65:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   855 |                                 case 1: return runDFI<PredMinSupp, PredEmerging, AminoAcid> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:856:59:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   856 |                                 case 2: return runDFI<PredMinSupp, PredEmerging, Dna> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = int; TEndPos = long unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:856:59:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   856 |                                 case 2: return runDFI<PredMinSupp, PredEmerging, Dna> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<unsigned char>, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:861:71:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   861 |                                 case 0: return runDFI<PredMinAllSupp, PredEntropy, unsigned char> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = int; TEndPos = long unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<unsigned char>, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:861:71:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   861 |                                 case 0: return runDFI<PredMinAllSupp, PredEntropy, unsigned char> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:862:67:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   862 |                                 case 1: return runDFI<PredMinAllSupp, PredEntropy, AminoAcid> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = int; TEndPos = long unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:862:67:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   862 |                                 case 1: return runDFI<PredMinAllSupp, PredEntropy, AminoAcid> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:863:61:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   863 |                                 case 2: return runDFI<PredMinAllSupp, PredEntropy, Dna> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = int; TEndPos = long unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:863:61:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   863 |                                 case 2: return runDFI<PredMinAllSupp, PredEntropy, Dna> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, AminoAcid_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, AminoAcid_>; TValueTarget = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, AminoAcid_>; TValueTarget = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, AminoAcid_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, AminoAcid_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSize = long int; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:257:13:   required from ‘bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >; TDatasets = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   257 |                         assignSeq(seqs[ds[s] + i], multiFasta[i], format);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:504:19:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   504 |         if (!loadDatasets(mySet, fileNames, ds)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:64:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   848 |                                 case 1: return runDFI<PredMinFreq, PredMaxFreq, AminoAcid> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::AminoAcid_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::AminoAcid_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSize = long int; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:257:13:   required from ‘bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >; TDatasets = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   257 |                         assignSeq(seqs[ds[s] + i], multiFasta[i], format);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:504:19:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   504 |         if (!loadDatasets(mySet, fileNames, ds)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:58:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |                                 case 2: return runDFI<PredMinFreq, PredMaxFreq, Dna> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp: In function ‘int main(int, const char**)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:845:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  845 |                         switch (options.alphabet)
      |                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:851:17: note: here
  851 |                 case 1:
      |                 ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:852:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  852 |                         switch (options.alphabet)
      |                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:858:17: note: here
  858 |                 case 2:
      |                 ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[  1%] Linking CXX executable ../../../bin/dfi
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi && /usr/bin/cmake -E cmake_link_script CMakeFiles/dfi.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/dfi.dir/dfi.cpp.o -o ../../../bin/dfi  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  1%] Built target dfi
make  -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  3%] Building CXX object core/apps/fiona/CMakeFiles/compute_gain.dir/compute_gain.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/fiona/CMakeFiles/compute_gain.dir/compute_gain.cpp.o -MF CMakeFiles/compute_gain.dir/compute_gain.cpp.o.d -o CMakeFiles/compute_gain.dir/compute_gain.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:2:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:10:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = Stats*; TParam = Stats]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Stats*; TParam = Stats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:605:23:   required from ‘void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = Stats*; TSource1 = Stats*; TSource2 = Stats*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   605 |         valueConstruct(target_begin, getValue(source_begin));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1420:31:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, False) [with TValueSource = Stats; TValueTarget = Stats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1420 |     _arrayConstructCopyDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = Stats; TValueTarget = Stats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Stats; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Stats; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<Stats>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = Stats; TSpec = Alloc<>; TSize = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<Stats>; TSize = int; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:843:11:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   843 |     resize(stats, options.numThreads);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:97:8: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&)’ is deprecated [-Wdeprecated-copy]
   97 | struct Stats
      |        ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:97:8: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&)’ is deprecated [-Wdeprecated-copy]
   97 | struct Stats
      |        ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:5:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘Stats::Stats(const Stats&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TValue = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TTargetSpec = Alloc<>; TValue = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TString2 = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:1032:20:   required from ‘typename seqan::EnableIf<typename seqan::Or<typename seqan::IsSameType<typename seqan::RemoveConst_<TTag>::Type, seqan::Tag<seqan::TagFasta_> >::Type, typename seqan::IsSameType<typename seqan::RemoveConst_<TTag>::Type, seqan::Tag<seqan::TagFastq_> >::Type>::Type, int>::Type seqan::read2(StringSet<TString, TSpec>&, StringSet<TSequence, TSpec>&, RecordReader<TFile, SinglePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TIdSpec = Owner<>; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSeqSpec = Owner<>; TFile = std::basic_fstream<char>; TSpec = void; TTag = Tag<TagFasta_>; typename EnableIf<typename Or<typename IsSameType<typename RemoveConst_<TTag>::Type, Tag<TagFasta_> >::Type, typename IsSameType<typename RemoveConst_<TTag>::Type, Tag<TagFastq_> >::Type>::Type, int>::Type = int; typename Or<typename IsSameType<typename RemoveConst_<TTag>::Type, Tag<TagFasta_> >::Type, typename IsSameType<typename RemoveConst_<TTag>::Type, Tag<TagFastq_> >::Type>::Type = True; typename IsSameType<typename RemoveConst_<TTag>::Type, Tag<TagFasta_> >::Type = True; typename RemoveConst_<TTag>::Type = Tag<TagFasta_>; typename IsSameType<typename RemoveConst_<TTag>::Type, Tag<TagFastq_> >::Type = False]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1032 |         appendValue(sequences, seq);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:809:14:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   809 |     if (read2(ids, seqs, readerGenome, Fasta()) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[  3%] Linking CXX executable ../../../bin/compute_gain
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_gain.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/compute_gain.dir/compute_gain.cpp.o -o ../../../bin/compute_gain  -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  3%] Built target compute_gain
make  -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  4%] Building CXX object core/apps/fiona/CMakeFiles/fiona.dir/fiona.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/fiona/CMakeFiles/fiona.dir/fiona.cpp.o -MF CMakeFiles/fiona.dir/fiona.cpp.o.d -o CMakeFiles/fiona.dir/fiona.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:103:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1687:34: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1687 | struct LessOverlap : public std::binary_function<TCorrection, TCorrection, bool >
      |                                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1705:42: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1705 | struct LessPositionOverlap : public std::binary_function<TCorrection, TCorrection, bool >
      |                                          ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4212:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4212 |     if (options.verbosity >= 2)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4215:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4215 |         Dna5String tmp;
      |         ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4235:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4235 |     if (options.verbosity >= 2)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4238:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4238 |         double experrreads = expectedValueTheoretical(options.expectedTheoretical, readLengthHist, options.genomeLength, options.errorrate);
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4413:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4413 |     if (options.verbosity >= 2)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4416:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4416 |         if (options.errorrate != 0 && options.wovsum != 0)
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4461:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4461 |     if (options.verbosity >= 1)
      |     ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/profiling.h:81:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   81 |     #define SEQAN_PROTIMESTART(a)       _proFloat a = sysTime()
      |                                         ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4463:9: note: in expansion of macro ‘SEQAN_PROTIMESTART’
 4463 |         SEQAN_PROTIMESTART(search);
      |         ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4684:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 4684 |     for (unsigned i = 0; i < length(store.readSeqStore); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4689:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 4689 |         TFionaQgramIndex qgramIndex(prefixes);
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4852:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4852 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4854:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4854 |         if (inTerm && options.verbosity >= 2)
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5027:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5027 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5032:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5032 |         resize(store.readSeqStore, readCount);
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function ‘int main(int, const char**)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5479:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5479 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5483:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5483 |         bool autoCycles = (options.cycles == 0 || options.cycles == 1000);
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5486:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5486 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/profiling.h:81:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   81 |     #define SEQAN_PROTIMESTART(a)       _proFloat a = sysTime()
      |                                         ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5489:9: note: in expansion of macro ‘SEQAN_PROTIMESTART’
 5489 |         SEQAN_PROTIMESTART(correction);
      |         ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5495:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5495 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5497:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5497 |         if (!loadReadsNoNames(store, options.inputFilename, options))
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5561:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5561 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5563:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5563 |         options.autolevel = (options.fromLevel <= 1);
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5671:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5671 |     if (res != 0)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5674 |         if (options.verbosity >= 1 && options.cycles > 1)
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:132:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints, Tag<TTagSpec>) [with TSA = String<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<10> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TWithConstraints = True; TStepSize = long unsigned int; TParallelTag = Parallel_]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4761:30:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note:  4761 |         _qgramFillSuffixArray(indexSA(qgramIndex), indexText(qgramIndex), indexShape(qgramIndex), indexDir(qgramIndex), qgramIndex.bucketMap, getStepSize(qgramIndex), True(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:438:61: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  438 |                     sa[atomicPostInc(*bktPtr, parallelTag)] = localPos;
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:445:65: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  445 |                         sa[atomicPostInc(*bktPtr, parallelTag)] = localPos;
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:472:65: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  472 |                         sa[atomicPostInc(*bktPtr, parallelTag)] = localPos;
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:116,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h: In instantiation of ‘void seqan::posLocalize(TResult&, const Pair<R1, R2, RPack>&, const String<TRightValue, TRightSpec>&) [with TResult = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSize = long unsigned int; TSpec = Alloc<>; T1 = unsigned int; T2 = short unsigned int; TPack = Tag<Pack_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:754:16:   required from ‘typename seqan::Suffix<T>::Type seqan::suffix(StringSet<TString, TSpec>&, const TPosition&) [with TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TPosition = Pair<unsigned int, short unsigned int, Tag<Pack_> >; typename Suffix<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, SuffixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   754 |     posLocalize(lPos, pos, stringSetLimits(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4918:43:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4918 |                 std::cerr << prefix(suffix(store.readSeqStore, front(indexSA(myIndex))), QGRAM_LENGTH) << " - ";
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:699:12: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  699 |     result = pos;
      |     ~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4686:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4686 |             appendValue(prefixes, infix(store.readSeqStore[i], 0, length(store.readSeqStore[i]) - cutLength));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:127:
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:103:8: warning: implicitly-declared ‘constexpr seqan::VertexEsa<long unsigned int>& seqan::VertexEsa<long unsigned int>::operator=(const seqan::VertexEsa<long unsigned int>&)’ is deprecated [-Wdeprecated-copy]
  103 | struct VertexSA : public VertexEsa<TSize>
      |        ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:290:17: note: because ‘seqan::VertexEsa<long unsigned int>’ has user-provided ‘seqan::VertexEsa<TSize>::VertexEsa(const seqan::VertexEsa<TSize>&) [with TSize = long unsigned int]’
  290 |                 VertexEsa(VertexEsa const &other):
      |                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note: synthesized method ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ first required here
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagLimit_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TExpand = TagLimit_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>, Array<4> >; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3625:32:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<seqan::Preorder> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  3625 |                     appendValue(correctCandidates, getOccurrences(iterSibling));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  4944 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4686:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  4686 |             appendValue(prefixes, infix(store.readSeqStore[i], 0, length(store.readSeqStore[i]) - cutLength));
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<Preorder> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2774:10:   required from ‘void seqan::goNextImpl(Iter<TIndex, VSTree<TopDown<ParentLinks<TSpec> > > >&, VSTreeIteratorTraits<Preorder_, THideEmptyEdges>) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2774 |                                 clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2052:13:   required from ‘void seqan::goNext(Iter<TIndex, VSTree<TSpec> >&, TTraits) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<Preorder> >; TTraits = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2052 |                 goNextImpl(it, traits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2047:9:   required from ‘void seqan::goNext(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2047 |                 goNext(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree<TSpec> > >::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3526:19:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<seqan::Preorder> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3526 |             goNext(iter);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  4944 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>*; TParam = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>*; TParam = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagLimit_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TExpand = TagLimit_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>, Array<4> >; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3625:32:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<seqan::Preorder> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  3625 |                     appendValue(correctCandidates, getOccurrences(iterSibling));
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  4944 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1925 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, const TValue2&, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TValue2 = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1964 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length, val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = long unsigned int; TValue = SimpleType<unsigned char, Dna5_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:842:19:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   842 |             resize(kmer, length(shape), (TValue)x);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22:   required from ‘unsigned int applyReadErrorCorrections(const seqan::String<TString>&, seqan::String<TAlphabet>&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore<void, FionaStoreConfig>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1958 |                 erase(store.readSeqStore[readId], possibleCorrections[correction].errorPos, possibleCorrections[correction].errorPos + possibleCorrections[correction].indelLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  5019 |         totalCorrections = applyReadErrorCorrections(correctionList,firstCorrectionForRead,store,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                            ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:129:
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h: In instantiation of ‘void seqan::assign(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from ‘void seqan::operator<<(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   359 |     assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:350:15: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  350 |         *_cur = *src;
      |         ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22:   required from ‘unsigned int applyReadErrorCorrections(const seqan::String<TString>&, seqan::String<TAlphabet>&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore<void, FionaStoreConfig>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1958 |                 erase(store.readSeqStore[readId], possibleCorrections[correction].errorPos, possibleCorrections[correction].errorPos + possibleCorrections[correction].indelLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5019 |         totalCorrections = applyReadErrorCorrections(correctionList,firstCorrectionForRead,store,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairIncrementer_<TPair, TLimits>&, const TLimits2&) [with TPair = Pair<unsigned int, short unsigned int, Tag<Pack_> >; TLimits = String<long unsigned int, Alloc<> >; TLimits2 = String<long unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   382 |                 setHost(p, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1032 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::pop(Pipe<TInput, TSpec>&, TValue&) [with TInput = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe<Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   386 |                                         _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~^
     387 |                                                 renamer, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~
     388 |                                                 names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |         Ref_ = *me;
      |         ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  599 |             tmp.i1 = localPos;
      |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   324 |             TNames_Sliced               names_sliced;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop(TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24:   required from ‘void seqan::Pool<TValue, TSpec>::pop(TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   925 |             reader->pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15:   required from ‘void seqan::pop(Pool<TValue, TPoolSpec>&, TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1159 |         me.pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  926 |             Ref_ = *cur;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   243 |     struct Pipe< TInput, Skew7 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104:   required from ‘void seqan::assign(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   349 |     for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                        ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from ‘void seqan::operator<<(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   359 |     assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104:   required from ‘void seqan::assign(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   349 |     for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                        ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from ‘void seqan::operator<<(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   359 |     assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104:   required from ‘void seqan::assign(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   349 |     for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                        ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from ‘void seqan::operator<<(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   359 |     assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> >, long unsigned int, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> >, long unsigned int, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   341 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   352 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   161 |             if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   162 |             if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   179 |             if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   190 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   173 |     struct Pipe< TInput, Skew3 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairDecrementer_<TPair, TLimits, m>&, const TLimits2&) [with TPair = Pair<unsigned int, short unsigned int, Tag<Pack_> >; TLimits = String<long unsigned int, Alloc<> >; unsigned int m = 7; TLimits2 = String<long unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                         setHost(localPos, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, short unsigned int, Tag<Pack_> >; TLimitsString = String<long unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1119 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, short unsigned int, Tag<Pack_> >; TLimitsString = String<long unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  557 |                         tmp.i1 = localPos;
      |                         ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TSpec = Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of ‘TResult seqan::_skew7NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   148 | /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn).i2; ++nameIn; o4.i1 = p--;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                        ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   247 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   259 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   123 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27:   required from ‘bool seqan::CompareSkewDCStream<TValue>::operator()(const seqan::SkewDCStream<TValue>&, const seqan::SkewDCStream<TValue>&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   124 |                 if (a.i.i3[i] < b.i.i3[i]) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   307 |                                 if (!streamGreater(inValue[stream],inValue[rank[right]])) break;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   319 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13:   required from ‘seqan::Pipe<TInput, seqan::Skew7>& seqan::Pipe<TInput, seqan::Skew7>::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   440 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13:   required from ‘seqan::Pipe<TInput, seqan::Counter>& seqan::Pipe<TInput, seqan::Counter>::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >, seqan::Skew7>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   105 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TSpec = Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of ‘TResult seqan::_skew3NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TFunctor = seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    86 |             o2.i2[0] = (*nameIn).i2; ++nameIn;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   301 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17:   required from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   111 |                 ++in.in2;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 3; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 1; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 2; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=]
  142 | /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p--;
      |                                                                                                               ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here
  144 |         case 5:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=]
  145 | /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p--;
      |                                                                                                                ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here
  147 |         case 4:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=]
  149 |                                                      cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                       ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here
  151 |         case 3:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=]
  152 | /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p--;
      |                                                                                                                 ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here
  154 |         case 2:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=]
  156 |                                cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here
  158 |         case 1:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:121:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, _skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, _skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:279:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:289:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, _skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, _skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, _skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26,
    inlined from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In constructor ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, _skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> >, long unsigned int, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[  4%] Linking CXX executable ../../../bin/fiona
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fiona.dir/fiona.cpp.o -o ../../../bin/fiona  -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  4%] Built target fiona
make  -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  4%] Building CXX object core/apps/fiona/CMakeFiles/fiona_illumina.dir/fiona.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/g++ -DFIONA_ILLUMINA -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/fiona/CMakeFiles/fiona_illumina.dir/fiona.cpp.o -MF CMakeFiles/fiona_illumina.dir/fiona.cpp.o.d -o CMakeFiles/fiona_illumina.dir/fiona.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:103:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1687:34: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1687 | struct LessOverlap : public std::binary_function<TCorrection, TCorrection, bool >
      |                                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1705:42: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1705 | struct LessPositionOverlap : public std::binary_function<TCorrection, TCorrection, bool >
      |                                          ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4212:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4212 |     if (options.verbosity >= 2)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4215:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4215 |         Dna5String tmp;
      |         ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4235:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4235 |     if (options.verbosity >= 2)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4238:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4238 |         double experrreads = expectedValueTheoretical(options.expectedTheoretical, readLengthHist, options.genomeLength, options.errorrate);
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4413:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4413 |     if (options.verbosity >= 2)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4416:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4416 |         if (options.errorrate != 0 && options.wovsum != 0)
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4461:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4461 |     if (options.verbosity >= 1)
      |     ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/profiling.h:81:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   81 |     #define SEQAN_PROTIMESTART(a)       _proFloat a = sysTime()
      |                                         ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4463:9: note: in expansion of macro ‘SEQAN_PROTIMESTART’
 4463 |         SEQAN_PROTIMESTART(search);
      |         ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4684:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 4684 |     for (unsigned i = 0; i < length(store.readSeqStore); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4689:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 4689 |         TFionaQgramIndex qgramIndex(prefixes);
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4852:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4852 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4854:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4854 |         if (inTerm && options.verbosity >= 2)
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5027:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5027 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5032:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5032 |         resize(store.readSeqStore, readCount);
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function ‘int main(int, const char**)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5479:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5479 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5483:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5483 |         bool autoCycles = (options.cycles == 0 || options.cycles == 1000);
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5486:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5486 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/profiling.h:81:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   81 |     #define SEQAN_PROTIMESTART(a)       _proFloat a = sysTime()
      |                                         ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5489:9: note: in expansion of macro ‘SEQAN_PROTIMESTART’
 5489 |         SEQAN_PROTIMESTART(correction);
      |         ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5495:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5495 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5497:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5497 |         if (!loadReadsNoNames(store, options.inputFilename, options))
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5561:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5561 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5563:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5563 |         options.autolevel = (options.fromLevel <= 1);
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5671:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5671 |     if (res != 0)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5674 |         if (options.verbosity >= 1 && options.cycles > 1)
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:132:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints, Tag<TTagSpec>) [with TSA = String<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<10> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TWithConstraints = True; TStepSize = long unsigned int; TParallelTag = Parallel_]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4761:30:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note:  4761 |         _qgramFillSuffixArray(indexSA(qgramIndex), indexText(qgramIndex), indexShape(qgramIndex), indexDir(qgramIndex), qgramIndex.bucketMap, getStepSize(qgramIndex), True(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:438:61: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  438 |                     sa[atomicPostInc(*bktPtr, parallelTag)] = localPos;
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:445:65: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  445 |                         sa[atomicPostInc(*bktPtr, parallelTag)] = localPos;
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:472:65: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  472 |                         sa[atomicPostInc(*bktPtr, parallelTag)] = localPos;
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:116,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h: In instantiation of ‘void seqan::posLocalize(TResult&, const Pair<R1, R2, RPack>&, const String<TRightValue, TRightSpec>&) [with TResult = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSize = long unsigned int; TSpec = Alloc<>; T1 = unsigned int; T2 = short unsigned int; TPack = Tag<Pack_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:754:16:   required from ‘typename seqan::Suffix<T>::Type seqan::suffix(StringSet<TString, TSpec>&, const TPosition&) [with TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TPosition = Pair<unsigned int, short unsigned int, Tag<Pack_> >; typename Suffix<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, SuffixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   754 |     posLocalize(lPos, pos, stringSetLimits(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4918:43:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4918 |                 std::cerr << prefix(suffix(store.readSeqStore, front(indexSA(myIndex))), QGRAM_LENGTH) << " - ";
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:699:12: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  699 |     result = pos;
      |     ~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4686:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4686 |             appendValue(prefixes, infix(store.readSeqStore[i], 0, length(store.readSeqStore[i]) - cutLength));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:127:
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:103:8: warning: implicitly-declared ‘constexpr seqan::VertexEsa<long unsigned int>& seqan::VertexEsa<long unsigned int>::operator=(const seqan::VertexEsa<long unsigned int>&)’ is deprecated [-Wdeprecated-copy]
  103 | struct VertexSA : public VertexEsa<TSize>
      |        ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:290:17: note: because ‘seqan::VertexEsa<long unsigned int>’ has user-provided ‘seqan::VertexEsa<TSize>::VertexEsa(const seqan::VertexEsa<TSize>&) [with TSize = long unsigned int]’
  290 |                 VertexEsa(VertexEsa const &other):
      |                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note: synthesized method ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ first required here
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagLimit_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TExpand = TagLimit_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>, Array<4> >; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3625:32:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<seqan::Preorder> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  3625 |                     appendValue(correctCandidates, getOccurrences(iterSibling));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  4944 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4686:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  4686 |             appendValue(prefixes, infix(store.readSeqStore[i], 0, length(store.readSeqStore[i]) - cutLength));
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<Preorder> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2774:10:   required from ‘void seqan::goNextImpl(Iter<TIndex, VSTree<TopDown<ParentLinks<TSpec> > > >&, VSTreeIteratorTraits<Preorder_, THideEmptyEdges>) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2774 |                                 clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2052:13:   required from ‘void seqan::goNext(Iter<TIndex, VSTree<TSpec> >&, TTraits) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<Preorder> >; TTraits = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2052 |                 goNextImpl(it, traits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2047:9:   required from ‘void seqan::goNext(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2047 |                 goNext(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree<TSpec> > >::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3526:19:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<seqan::Preorder> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3526 |             goNext(iter);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  4944 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>*; TParam = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>*; TParam = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagLimit_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TExpand = TagLimit_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>, Array<4> >; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3625:32:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<seqan::Preorder> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  3625 |                     appendValue(correctCandidates, getOccurrences(iterSibling));
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  4944 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1925 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, const TValue2&, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TValue2 = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1964 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length, val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = long unsigned int; TValue = SimpleType<unsigned char, Dna5_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:842:19:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   842 |             resize(kmer, length(shape), (TValue)x);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22:   required from ‘unsigned int applyReadErrorCorrections(const seqan::String<TString>&, seqan::String<TAlphabet>&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore<void, FionaStoreConfig>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1958 |                 erase(store.readSeqStore[readId], possibleCorrections[correction].errorPos, possibleCorrections[correction].errorPos + possibleCorrections[correction].indelLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  5019 |         totalCorrections = applyReadErrorCorrections(correctionList,firstCorrectionForRead,store,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                            ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:129:
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h: In instantiation of ‘void seqan::assign(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from ‘void seqan::operator<<(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   359 |     assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:350:15: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  350 |         *_cur = *src;
      |         ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22:   required from ‘unsigned int applyReadErrorCorrections(const seqan::String<TString>&, seqan::String<TAlphabet>&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore<void, FionaStoreConfig>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1958 |                 erase(store.readSeqStore[readId], possibleCorrections[correction].errorPos, possibleCorrections[correction].errorPos + possibleCorrections[correction].indelLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5019 |         totalCorrections = applyReadErrorCorrections(correctionList,firstCorrectionForRead,store,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairIncrementer_<TPair, TLimits>&, const TLimits2&) [with TPair = Pair<unsigned int, short unsigned int, Tag<Pack_> >; TLimits = String<long unsigned int, Alloc<> >; TLimits2 = String<long unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   382 |                 setHost(p, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1032 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::pop(Pipe<TInput, TSpec>&, TValue&) [with TInput = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe<Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   386 |                                         _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~^
     387 |                                                 renamer, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~
     388 |                                                 names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |         Ref_ = *me;
      |         ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  599 |             tmp.i1 = localPos;
      |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   324 |             TNames_Sliced               names_sliced;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop(TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24:   required from ‘void seqan::Pool<TValue, TSpec>::pop(TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   925 |             reader->pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15:   required from ‘void seqan::pop(Pool<TValue, TPoolSpec>&, TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1159 |         me.pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  926 |             Ref_ = *cur;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   243 |     struct Pipe< TInput, Skew7 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104:   required from ‘void seqan::assign(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   349 |     for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                        ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from ‘void seqan::operator<<(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   359 |     assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104:   required from ‘void seqan::assign(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   349 |     for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                        ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from ‘void seqan::operator<<(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   359 |     assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104:   required from ‘void seqan::assign(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   349 |     for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                        ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from ‘void seqan::operator<<(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   359 |     assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> >, long unsigned int, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> >, long unsigned int, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   341 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   352 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   161 |             if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   162 |             if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   179 |             if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   190 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   173 |     struct Pipe< TInput, Skew3 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairDecrementer_<TPair, TLimits, m>&, const TLimits2&) [with TPair = Pair<unsigned int, short unsigned int, Tag<Pack_> >; TLimits = String<long unsigned int, Alloc<> >; unsigned int m = 7; TLimits2 = String<long unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                         setHost(localPos, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, short unsigned int, Tag<Pack_> >; TLimitsString = String<long unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1119 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, short unsigned int, Tag<Pack_> >; TLimitsString = String<long unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  557 |                         tmp.i1 = localPos;
      |                         ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TSpec = Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of ‘TResult seqan::_skew7NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   148 | /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn).i2; ++nameIn; o4.i1 = p--;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                        ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   247 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   259 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   123 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27:   required from ‘bool seqan::CompareSkewDCStream<TValue>::operator()(const seqan::SkewDCStream<TValue>&, const seqan::SkewDCStream<TValue>&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   124 |                 if (a.i.i3[i] < b.i.i3[i]) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   307 |                                 if (!streamGreater(inValue[stream],inValue[rank[right]])) break;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   319 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13:   required from ‘seqan::Pipe<TInput, seqan::Skew7>& seqan::Pipe<TInput, seqan::Skew7>::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   440 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13:   required from ‘seqan::Pipe<TInput, seqan::Counter>& seqan::Pipe<TInput, seqan::Counter>::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >, seqan::Skew7>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   105 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TSpec = Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of ‘TResult seqan::_skew3NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TFunctor = seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    86 |             o2.i2[0] = (*nameIn).i2; ++nameIn;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   301 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17:   required from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   111 |                 ++in.in2;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 3; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 1; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 2; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=]
  142 | /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p--;
      |                                                                                                               ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here
  144 |         case 5:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=]
  145 | /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p--;
      |                                                                                                                ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here
  147 |         case 4:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=]
  149 |                                                      cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                       ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here
  151 |         case 3:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=]
  152 | /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p--;
      |                                                                                                                 ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here
  154 |         case 2:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=]
  156 |                                cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here
  158 |         case 1:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:121:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, _skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, _skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:279:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:289:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, _skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, _skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, _skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26,
    inlined from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In constructor ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, _skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> >, long unsigned int, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[  6%] Linking CXX executable ../../../bin/fiona_illumina
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona_illumina.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fiona_illumina.dir/fiona.cpp.o -o ../../../bin/fiona_illumina  -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  6%] Built target fiona_illumina
make  -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason/CMakeFiles/mason.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  8%] Building CXX object core/apps/mason/CMakeFiles/mason.dir/mason.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/mason/CMakeFiles/mason.dir/mason.cpp.o -MF CMakeFiles/mason.dir/mason.cpp.o.d -o CMakeFiles/mason.dir/mason.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:39:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   700 |         write(fstrm, fragmentStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   700 |         write(fstrm, fragmentStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:90:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   700 |         write(fstrm, fragmentStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, Tag<TExpand>) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1189 |     return begin(me, tag_) + pos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1169 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20:   required from ‘void seqan::insertGaps(Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition, TCount) [with TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TPosition = long int; TCount = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   465 |     TIter it = iter(gaps, clippedViewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:628:15:   required from ‘void seqan::insertGap(Gaps<TSequence, TSpec>&, TPosition) [with TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >; TPosition = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   628 |     insertGaps(gaps, clippedViewPos, 1u);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2582:18:   required from ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&) [with TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TScore = Score<int, Tag<LevenshteinDistance_> >; TShrinkMatches = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2582 |                                                                 insertGap(gaps, insPos - rBegin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1565:36:   required from ‘int simulateReadsMain(seqan::FragmentStore<seqan::MyFragmentStoreConfig>&, TRNG&, const TOptions&, const ModelParameters<TSpec>&) [with TRNG = seqan::Rng<seqan::MersenneTwister>; TReadsTag = seqan::Tag<IlluminaReads_>; TOptions = Options<seqan::Tag<IlluminaReads_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1565 |     convertMatchesToGlobalAlignment(fragmentStore, Score<int, EditDistance>(), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:608:28:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   608 |     ret = simulateReadsMain(fragmentStore, rng, options, modelParameters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<long int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   700 |         write(fstrm, fragmentStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<long int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   700 |         write(fstrm, fragmentStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2091:19:   required from ‘typename seqan::Size<T>::Type seqan::reserve(T&, const TSize&) [with T = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSize = long unsigned int; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2091 |     return reserve(me, new_capacity, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:478:12:   required from ‘int writeRandomSequence(TRNG&, size_t, const seqan::CharString&, const TOptions&) [with TRNG = seqan::Rng<seqan::MersenneTwister>; TOptions = Options<seqan::Tag<IlluminaReads_> >; size_t = long unsigned int; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   478 |     reserve(randomSequence, length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:568:38:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   568 |         int ret = writeRandomSequence(rng, options.randomSourceLength, referenceFilename, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                   ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1385:31:   required from ‘int simulateReadsMain(seqan::FragmentStore<seqan::MyFragmentStoreConfig>&, TRNG&, const TOptions&, const ModelParameters<TSpec>&) [with TRNG = seqan::Rng<seqan::MersenneTwister>; TReadsTag = seqan::Tag<IlluminaReads_>; TOptions = Options<seqan::Tag<IlluminaReads_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1385 |                 String<Dna5Q> read = infix(haplotypeContigsCopy[inst.contigId], inst.beginPos, inst.endPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                               ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:608:28:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   608 |     ret = simulateReadsMain(fragmentStore, rng, options, modelParameters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   700 |         write(fstrm, fragmentStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<long int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   700 |         write(fstrm, fragmentStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::String<char, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = String<char, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence_journaled/sequence_journaled.h:745:11:   required from ‘void seqan::insert(String<TValue_, Journaled<THostSpec_, TJournalSpec_, TBufferSpec_> >&, TPos, const TString&) [with TValue = SimpleType<unsigned char, Dna5_>; THostSpec = Alloc<>; TJournalSpec = SortedArray; TBufferSpec = Alloc<>; TString = String<char, Alloc<> >; TPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   745 |     append(journaledString._insertionBuffer, seq);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:944:19:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   944 |             insert(haplotype[contigId], pos + delta, alt[allele]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2091:19:   required from ‘typename seqan::Size<T>::Type seqan::reserve(T&, const TSize&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = unsigned int; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2091 |     return reserve(me, new_capacity, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1008:12:   required from ‘void buildHaplotype(seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Journaled<seqan::Alloc<> > > >&, seqan::FragmentStore<seqan::MyFragmentStoreConfig>&, seqan::String<seqan::String<Snp> >&, TRNG&, const Options<void>&) [with TRNG = seqan::Rng<seqan::MersenneTwister>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1008 |     reserve(buffer, options.haplotypeIndelRangeMax);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1322:27:   required from ‘int simulateReadsMain(seqan::FragmentStore<seqan::MyFragmentStoreConfig>&, TRNG&, const TOptions&, const ModelParameters<TSpec>&) [with TRNG = seqan::Rng<seqan::MersenneTwister>; TReadsTag = seqan::Tag<IlluminaReads_>; TOptions = Options<seqan::Tag<IlluminaReads_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1322 |             buildHaplotype(haplotypeContigs, fragmentStore, snpSet, rng, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:608:28:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   608 |     ret = simulateReadsMain(fragmentStore, rng, options, modelParameters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::String<char, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = String<char, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence_journaled/sequence_journaled.h:745:11:   required from ‘void seqan::insert(String<TValue_, Journaled<THostSpec_, TJournalSpec_, TBufferSpec_> >&, TPos, const TString&) [with TValue = SimpleType<unsigned char, Dna5_>; THostSpec = Alloc<>; TJournalSpec = SortedArray; TBufferSpec = Alloc<>; TString = String<char, Alloc<> >; TPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   745 |     append(journaledString._insertionBuffer, seq);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:944:19:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   944 |             insert(haplotype[contigId], pos + delta, alt[allele]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_tempbuf.h:59,
                 from /usr/include/c++/14/bits/stl_algo.h:69,
                 from /usr/include/c++/14/algorithm:61,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:37:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<ReadSimulationInstruction<Tag<SangerReads_> >, Alloc<> >; TValue = ReadSimulationInstruction<Tag<SangerReads_> >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = ReadSimulationInstruction<Tag<SangerReads_> >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = ReadSimulationInstruction<Tag<SangerReads_> >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = ReadSimulationInstruction<Tag<SangerReads_> >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ReadSimulationInstruction<Tag<SangerReads_> >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ReadSimulationInstruction<Tag<SangerReads_> >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = ReadSimulationInstruction<Tag<SangerReads_> >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<ReadSimulationInstruction<Tag<SangerReads_> >, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<ReadSimulationInstruction<Tag<SangerReads_> >, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘int buildReadSimulationInstruction(seqan::String<ReadSimulationInstruction<TReadsTag> >&, TRNG&, const unsigned int&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, THaplotypeSpec> >&, const seqan::String<double>&, const size_t&, bool, const ModelParameters<TReadsTag>&, const Options<TReadsTag>&) [with TReadsTag = seqan::Tag<SangerReads_>; TRNG = seqan::Rng<seqan::MersenneTwister>; THaplotypeSpec = seqan::Alloc<>]’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1193:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551456’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘int buildReadSimulationInstruction(seqan::String<ReadSimulationInstruction<TReadsTag> >&, TRNG&, const unsigned int&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, THaplotypeSpec> >&, const seqan::String<double>&, const size_t&, bool, const ModelParameters<TReadsTag>&, const Options<TReadsTag>&) [with TReadsTag = seqan::Tag<SangerReads_>; TRNG = seqan::Rng<seqan::MersenneTwister>; THaplotypeSpec = seqan::Alloc<>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<ReadSimulationInstruction<Tag<IlluminaReads_> >, Alloc<> >; TValue = ReadSimulationInstruction<Tag<IlluminaReads_> >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = ReadSimulationInstruction<Tag<IlluminaReads_> >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = ReadSimulationInstruction<Tag<IlluminaReads_> >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = ReadSimulationInstruction<Tag<IlluminaReads_> >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ReadSimulationInstruction<Tag<IlluminaReads_> >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ReadSimulationInstruction<Tag<IlluminaReads_> >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = ReadSimulationInstruction<Tag<IlluminaReads_> >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<ReadSimulationInstruction<Tag<IlluminaReads_> >, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<ReadSimulationInstruction<Tag<IlluminaReads_> >, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘int buildReadSimulationInstruction(seqan::String<ReadSimulationInstruction<TReadsTag> >&, TRNG&, const unsigned int&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, THaplotypeSpec> >&, const seqan::String<double>&, const size_t&, bool, const ModelParameters<TReadsTag>&, const Options<TReadsTag>&) [with TReadsTag = seqan::Tag<IlluminaReads_>; TRNG = seqan::Rng<seqan::MersenneTwister>; THaplotypeSpec = seqan::Alloc<>]’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1193:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551456’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘int buildReadSimulationInstruction(seqan::String<ReadSimulationInstruction<TReadsTag> >&, TRNG&, const unsigned int&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, THaplotypeSpec> >&, const seqan::String<double>&, const size_t&, bool, const ModelParameters<TReadsTag>&, const Options<TReadsTag>&) [with TReadsTag = seqan::Tag<IlluminaReads_>; TRNG = seqan::Rng<seqan::MersenneTwister>; THaplotypeSpec = seqan::Alloc<>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<ReadSimulationInstruction<Tag<_LS454Reads> >, Alloc<> >; TValue = ReadSimulationInstruction<Tag<_LS454Reads> >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = ReadSimulationInstruction<Tag<_LS454Reads> >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = ReadSimulationInstruction<Tag<_LS454Reads> >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = ReadSimulationInstruction<Tag<_LS454Reads> >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ReadSimulationInstruction<Tag<_LS454Reads> >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ReadSimulationInstruction<Tag<_LS454Reads> >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = ReadSimulationInstruction<Tag<_LS454Reads> >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<ReadSimulationInstruction<Tag<_LS454Reads> >, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<ReadSimulationInstruction<Tag<_LS454Reads> >, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘int buildReadSimulationInstruction(seqan::String<ReadSimulationInstruction<TReadsTag> >&, TRNG&, const unsigned int&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, THaplotypeSpec> >&, const seqan::String<double>&, const size_t&, bool, const ModelParameters<TReadsTag>&, const Options<TReadsTag>&) [with TReadsTag = seqan::Tag<_LS454Reads>; TRNG = seqan::Rng<seqan::MersenneTwister>; THaplotypeSpec = seqan::Alloc<>]’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1193:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551408’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘int buildReadSimulationInstruction(seqan::String<ReadSimulationInstruction<TReadsTag> >&, TRNG&, const unsigned int&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, THaplotypeSpec> >&, const seqan::String<double>&, const size_t&, bool, const ModelParameters<TReadsTag>&, const Options<TReadsTag>&) [with TReadsTag = seqan::Tag<_LS454Reads>; TRNG = seqan::Rng<seqan::MersenneTwister>; THaplotypeSpec = seqan::Alloc<>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[  8%] Linking CXX executable ../../../bin/mason
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason.dir/mason.cpp.o -o ../../../bin/mason  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  8%] Built target mason
make  -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  8%] Building CXX object core/apps/micro_razers/CMakeFiles/micro_razers.dir/micro_razers.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/micro_razers/CMakeFiles/micro_razers.dir/micro_razers.cpp.o -MF CMakeFiles/micro_razers.dir/micro_razers.cpp.o.d -o CMakeFiles/micro_razers.dir/micro_razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:25:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:662:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  662 |         struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:691:49: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  691 |         struct LessRNoEdistHLen : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:747:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  747 |         struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:779:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  779 |         struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/outputFormat.h:30,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:38:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/outputFormat.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/outputFormat.h:126:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  126 |         struct LessGPosRNo : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TValue = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1911:25:   required from ‘void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue = unsigned int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1911 |                         _qgramFillSuffixArray(sa, text, shape, dir, nothing, True(), prefixLen, MicroRNA());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  2007 |                 createQGramIndex(swiftIndex,options.rnaSeedLength,MicroRNA());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1845 |                                 if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;               // if bucket is enabled
      |                                                          ~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1847 |                                 sa[dir[hash(shape, itText) + 1]++] = localPos;                  // first hash
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1855 |                                         if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;       // if bucket is enabled
      |                                                                  ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1857 |                                         sa[dir[hashNext(shape, itText) + 1]++] = localPos;      // next hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TValue = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1922:25:   required from ‘void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1922 |                         _qgramFillSuffixArray(sa, text, shape, dir, nothing, False(),prefixLen, MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2007 |                 createQGramIndex(swiftIndex,options.rnaSeedLength,MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1845 |                                 if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;               // if bucket is enabled
      |                                                          ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1847 |                                 sa[dir[hash(shape, itText) + 1]++] = localPos;                  // first hash
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1855 |                                         if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;       // if bucket is enabled
      |                                                                  ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1857 |                                         sa[dir[hashNext(shape, itText) + 1]++] = localPos;      // next hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, const TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobalHamming) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobalHamming = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1378:35: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1378 |                 return matchVerify(m,inf,rseqNo,readSet,options,MicroRNA());
      |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:   initializing argument 2 of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, const RazerSOptions<TSpec>&, MicroRNA) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = RazerSSpec<>]’
 1276 |         Segment<TGenome, InfixSegment> inf,             // potential match genome region
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TValue = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1911:25:   required from ‘void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:  1911 |                         _qgramFillSuffixArray(sa, text, shape, dir, nothing, True(), prefixLen, MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:  2007 |                 createQGramIndex(swiftIndex,options.rnaSeedLength,MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1845 |                                 if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;               // if bucket is enabled
      |                                                          ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1847 |                                 sa[dir[hash(shape, itText) + 1]++] = localPos;                  // first hash
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1855 |                                         if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;       // if bucket is enabled
      |                                                                  ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1857 |                                         sa[dir[hashNext(shape, itText) + 1]++] = localPos;      // next hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TValue = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1922:25:   required from ‘void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1922 |                         _qgramFillSuffixArray(sa, text, shape, dir, nothing, False(),prefixLen, MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2007 |                 createQGramIndex(swiftIndex,options.rnaSeedLength,MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1845 |                                 if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;               // if bucket is enabled
      |                                                          ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1847 |                                 sa[dir[hash(shape, itText) + 1]++] = localPos;                  // first hash
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1855 |                                         if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;       // if bucket is enabled
      |                                                                  ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1857 |                                         sa[dir[hashNext(shape, itText) + 1]++] = localPos;      // next hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TValue = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1911:25:   required from ‘void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1911 |                         _qgramFillSuffixArray(sa, text, shape, dir, nothing, True(), prefixLen, MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2007 |                 createQGramIndex(swiftIndex,options.rnaSeedLength,MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1845 |                                 if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;               // if bucket is enabled
      |                                                          ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1847 |                                 sa[dir[hash(shape, itText) + 1]++] = localPos;                  // first hash
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1855 |                                         if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;       // if bucket is enabled
      |                                                                  ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1857 |                                         sa[dir[hashNext(shape, itText) + 1]++] = localPos;      // next hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TValue = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1922:25:   required from ‘void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1922 |                         _qgramFillSuffixArray(sa, text, shape, dir, nothing, False(),prefixLen, MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2007 |                 createQGramIndex(swiftIndex,options.rnaSeedLength,MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1845 |                                 if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;               // if bucket is enabled
      |                                                          ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1847 |                                 sa[dir[hash(shape, itText) + 1]++] = localPos;                  // first hash
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1855 |                                         if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;       // if bucket is enabled
      |                                                                  ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1857 |                                         sa[dir[hashNext(shape, itText) + 1]++] = localPos;      // next hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1490:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1490 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:570:9:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   570 |         reserve(reads.concat, length(reads.concat), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:158:19:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   158 |     if (!loadReads(readSet, readNames, toCString(readFileNames[0]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1716:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1716 |         while (find(swiftFinder, swiftPattern, 0.2))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1716:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1716 |         while (find(swiftFinder, swiftPattern, 0.2))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:5:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1459:15:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1459 |         TMyersFinder myersFinder(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1490:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1490 |         TGenomeInfixRev         infRev(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1491:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1491 |         TReadRev                        readRev(readSet[rseqNo]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1716:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1716 |         while (find(swiftFinder, swiftPattern, 0.2))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2306:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2306 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1716:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1716 |         while (find(swiftFinder, swiftPattern, 0.2))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2309:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2309 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1459:15:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1459 |         TMyersFinder myersFinder(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1685:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1685 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1685:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1685 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1685:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1685 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1474:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1474 |         while (find(myersFinder, myersPattern, minScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1492:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1492 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = long int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:612:11:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   612 |         assignSeq(firstRead, multiFasta[0], format);                    // read the first sequence
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:562:14:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   562 |                 appendValue(reads, seq, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:158:19:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   158 |     if (!loadReads(readSet, readNames, toCString(readFileNames[0]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18:   required from ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void; typename Parameter_<T>::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   793 |         return container(hostIterator(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1497:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1497 |         while (find(myersFinderRev, myersPatternRev, maxScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  294 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:562:14:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   562 |                 appendValue(reads, seq, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:158:19:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   158 |     if (!loadReads(readSet, readNames, toCString(readFileNames[0]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TSize = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   484 |                 resize(pattern, span, (ErrorAlphabet)SEQAN_MATCH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:456:30:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   456 |             if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:456:30:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   456 |             if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, ErrorAlphabet_>*; TSource1 = SimpleType<unsigned char, ErrorAlphabet_>*; TSource2 = SimpleType<unsigned char, ErrorAlphabet_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:456:30:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   456 |             if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /usr/include/c++/14/string:51:
In static member function ‘static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]’,
    inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:507:30,
    inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:534:42,
    inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:541:31,
    inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:637:7,
    inlined from ‘void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:855:16,
    inlined from ‘void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:865:29,
    inlined from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21,
    inlined from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31,
    inlined from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSource = const char; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1368:31,
    inlined from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42,
    inlined from ‘void seqan::append(TTarget&, TSource&) [with TTarget = String<char, Alloc<> >; TSource = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11,
    inlined from ‘void seqan::_parse_readShape(TFile&, TChar&, CharString&) [with TFile = std::basic_fstream<char>; TChar = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:861:15,
    inlined from ‘bool seqan::parseGappedParams(RazerSOptions<TSpec>&, TFile&, ParamChooserOptions&) [with TFile = std::basic_fstream<char>; TSpec = RazerSSpec<>]’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1068:25,
    inlined from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1342:26:
/usr/include/c++/14/bits/stl_algobase.h:438:30: warning: ‘void* __builtin_memmove(void*, const void*, long unsigned int)’ forming offset 1 is out of the bounds [0, 1] of object ‘c’ with type ‘char’ [-Warray-bounds=]
  438 |             __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
      |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:39:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h: In function ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1043:10: note: ‘c’ declared here
 1043 |     char c = _streamGet(file);
      |          ^
[  9%] Building CXX object core/apps/micro_razers/CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/micro_razers/CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -MF CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o.d -o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/param_tabs.cpp
[  9%] Linking CXX executable ../../../bin/micro_razers
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/micro_razers.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/micro_razers.dir/micro_razers.cpp.o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -o ../../../bin/micro_razers  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
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make  -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
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make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 11%] Building CXX object core/apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o -MF CMakeFiles/pair_align.dir/pair_align.cpp.o.d -o CMakeFiles/pair_align.dir/pair_align.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:19:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:18:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17:   required from ‘bool seqan::convertAlignment(const Graph<Alignment<TStringSet, TCargo, TSpec> >&, TMatrix&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TCargo = void; TSpec = const Tag<WithoutEdgeId_>; TMatrix = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:  1892 |                 TStringSetStr str = label(g,it->second);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |                               ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:897:22:   required from ‘void seqan::write(TFile&, const Graph<TSpec>&, const TNames&, FastaFormat) [with TFile = _IO_FILE*; TSpec = Alignment<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, void, const Tag<WithoutEdgeId_> >; TNames = StringSet<String<char, Alloc<> > >; FastaFormat = const Tag<FastaFormat_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:   897 |         if (convertAlignment(g, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |             ~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:131:14:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutputFormat, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = unsigned int; TDiag = int; TOutputFormat = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:   131 |         write(strmWrite, gAlign, sequenceNames, FastaFormat());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:215:76:   required from ‘void _initAlignParams(const Options&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:   215 |             pairwise_align<TAlphabet, AlignConfig<true, true, true, true> >(sc, seqfile, method, low, high, banded, options.outputFormat, outfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:262:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:   262 |         _initAlignParams<Dna5>(options, sc);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Rna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Rna5_>; TValueTarget = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Rna5_>; TValueTarget = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Rna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Rna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17:   required from ‘bool seqan::convertAlignment(const Graph<Alignment<TStringSet, TCargo, TSpec> >&, TMatrix&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TCargo = void; TSpec = const Tag<WithoutEdgeId_>; TMatrix = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1892 |                 TStringSetStr str = label(g,it->second);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                               ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:897:22:   required from ‘void seqan::write(TFile&, const Graph<TSpec>&, const TNames&, FastaFormat) [with TFile = _IO_FILE*; TSpec = Alignment<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, void, const Tag<WithoutEdgeId_> >; TNames = StringSet<String<char, Alloc<> > >; FastaFormat = const Tag<FastaFormat_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   897 |         if (convertAlignment(g, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:131:14:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutputFormat, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>; TAlignConfig = seqan::AlignConfig<true, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = unsigned int; TDiag = int; TOutputFormat = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         write(strmWrite, gAlign, sequenceNames, FastaFormat());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:215:76:   required from ‘void _initAlignParams(const Options&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   215 |             pairwise_align<TAlphabet, AlignConfig<true, true, true, true> >(sc, seqfile, method, low, high, banded, options.outputFormat, outfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:298:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   298 |         _initAlignParams<Rna5>(options, sc);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Rna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Rna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, AminoAcid_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, AminoAcid_>; TValueTarget = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, AminoAcid_>; TValueTarget = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, AminoAcid_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, AminoAcid_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17:   required from ‘bool seqan::convertAlignment(const Graph<Alignment<TStringSet, TCargo, TSpec> >&, TMatrix&) [with TStringSet = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TCargo = void; TSpec = const Tag<WithoutEdgeId_>; TMatrix = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1892 |                 TStringSetStr str = label(g,it->second);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                               ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:897:22:   required from ‘void seqan::write(TFile&, const Graph<TSpec>&, const TNames&, FastaFormat) [with TFile = _IO_FILE*; TSpec = Alignment<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, void, const Tag<WithoutEdgeId_> >; TNames = StringSet<String<char, Alloc<> > >; FastaFormat = const Tag<FastaFormat_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   897 |         if (convertAlignment(g, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:131:14:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutputFormat, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TAlignConfig = seqan::AlignConfig<true, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = unsigned int; TDiag = int; TOutputFormat = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         write(strmWrite, gAlign, sequenceNames, FastaFormat());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:215:76:   required from ‘void _initAlignParams(const Options&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   215 |             pairwise_align<TAlphabet, AlignConfig<true, true, true, true> >(sc, seqfile, method, low, high, banded, options.outputFormat, outfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:316:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   316 |         _initAlignParams<AminoAcid>(options, sc);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::AminoAcid_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::AminoAcid_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<String<char, Alloc<> > >; TValue = String<char, Alloc<> >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = String<char, Alloc<> >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = String<char, Alloc<> >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = String<char, Alloc<> >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = String<char, Alloc<> >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = String<char, Alloc<> >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::String<char, seqan::Alloc<> > >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = String<char, Alloc<> >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<String<char, Alloc<> > >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<String<char, Alloc<> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::HtmlToolDocPrinter_::_toHtml(const TSequence&) const [with TSequence = seqan::String<char, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/tool_doc.h:284:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘TSequence seqan::HtmlToolDocPrinter_::_toHtml(const TSequence&) const [with TSequence = seqan::String<char, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 11%] Linking CXX executable ../../../bin/pair_align
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align && /usr/bin/cmake -E cmake_link_script CMakeFiles/pair_align.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/pair_align.dir/pair_align.cpp.o -o ../../../bin/pair_align  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 11%] Built target pair_align
make  -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 12%] Building CXX object core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -MF CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o.d -o CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:27:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:120:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   120 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:80:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:    80 |     Dna5String seqFirstRC = seqFirst;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 12%] Linking CXX executable ../../../bin/rabema_prepare_sam
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_prepare_sam.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -o ../../../bin/rabema_prepare_sam  -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 12%] Built target rabema_prepare_sam
make  -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 12%] Building CXX object core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -MF CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o.d -o CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:31:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:42:
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:105:10: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  105 |     std::binary_function<WeightedMatch, WeightedMatch, bool>
      |          ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:88:7:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    88 | class ModifiedIterator
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |       ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<WeightedMatch>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<WeightedMatch>, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:254:100:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   254 |             TModifiedString rRightInterval(infix(errorCurve, rightmostPos, offset + intervalLength));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<WeightedMatch>, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<WeightedMatch>, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<WeightedMatch>, InfixSegment>; TTagSpec = Standard_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:257:52:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   257 |             for (TModifiedStringIterator it = begin(rRightInterval, Standard()); it != end(rRightInterval, Standard()); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<WeightedMatch>, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<WeightedMatch>, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:507:97:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::end(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<WeightedMatch>, InfixSegment>; TTagSpec = Standard_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   507 |     typename Iterator<ModifiedString<THost, ModReverse>, Tag<TTagSpec> const >::Type temp_(begin(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                            ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:257:91:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   257 |             for (TModifiedStringIterator it = begin(rRightInterval, Standard()); it != end(rRightInterval, Standard()); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                        ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h: In instantiation of ‘seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> > seqan::reverseString(THost&) [with THost = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55:   required from ‘static void seqan::FindBeginImpl_<seqan::Myers<seqan::FindPrefix, THasState, void> >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix> >; TNeedle = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   218 |                 setHost(pattern.data_findBeginPattern, reverseString(needle_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                        ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62:   required from ‘void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Myers<FindInfix> >; TNeedle = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   336 |         return FindBeginImpl_<TFindBeginPatternSpec>::_findBeginInit(pattern, needle_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16:   required from ‘void seqan::_patternFirstInit(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   591 |         _findBeginInit(pattern, needle);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19:   required from ‘void seqan::setHost(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, const TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   723 |         _patternFirstInit(pattern, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   497 |                 setHost(*this, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   108 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:411:41:   required from ‘void buildErrorCurvePoints(seqan::String<WeightedMatch>&, int&, TContigSeq&, size_t, bool, TReadSeq&, size_t, size_t, const TReadNames&, bool, const TPatternSpec&) [with TContigSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TReadSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TReadNames = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   411 |         Pattern<TReadSeq, TPatternSpec> pattern(read, -(int)length(read) * 40);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:901:34:   required from ‘int matchesToErrorFunction(TErrorCurves&, seqan::String<int>&, TStreamOrReader&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&, const TFormat&) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TStreamOrReader = seqan::RecordReader<std::basic_ifstream<char>, seqan::SinglePass<void> >; TFormat = seqan::Tag<seqan::Sam_>; TErrorCurves = std::map<int, seqan::String<WeightedMatch> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   901 |             buildErrorCurvePoints(errorCurves[readId], maxError, contig, record.rID, !hasFlagRC(record),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     902 |                                   readSeq, readId, endPos, readNameStore, options.matchN, TPatternSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:1252:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1252 |             res = matchesToErrorFunction(errorCurves, readAlignmentDistances, samReader, bamIOContext, readNameStore,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1253 |                                          refNameStore, faiIndex, options, MyersUkkonenReads(), Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  624 |         return ModifiedString<THost, ModReverse>(host);
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:9:   required from ‘seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> > seqan::reverseString(THost&) [with THost = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   624 |         return ModifiedString<THost, ModReverse>(host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55:   required from ‘static void seqan::FindBeginImpl_<seqan::Myers<seqan::FindPrefix, THasState, void> >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix> >; TNeedle = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   218 |                 setHost(pattern.data_findBeginPattern, reverseString(needle_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                        ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62:   required from ‘void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Myers<FindInfix> >; TNeedle = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   336 |         return FindBeginImpl_<TFindBeginPatternSpec>::_findBeginInit(pattern, needle_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16:   required from ‘void seqan::_patternFirstInit(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   591 |         _findBeginInit(pattern, needle);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19:   required from ‘void seqan::setHost(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, const TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   723 |         _patternFirstInit(pattern, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   497 |                 setHost(*this, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   108 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:411:41:   required from ‘void buildErrorCurvePoints(seqan::String<WeightedMatch>&, int&, TContigSeq&, size_t, bool, TReadSeq&, size_t, size_t, const TReadNames&, bool, const TPatternSpec&) [with TContigSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TReadSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TReadNames = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   411 |         Pattern<TReadSeq, TPatternSpec> pattern(read, -(int)length(read) * 40);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:901:34:   required from ‘int matchesToErrorFunction(TErrorCurves&, seqan::String<int>&, TStreamOrReader&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&, const TFormat&) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TStreamOrReader = seqan::RecordReader<std::basic_ifstream<char>, seqan::SinglePass<void> >; TFormat = seqan::Tag<seqan::Sam_>; TErrorCurves = std::map<int, seqan::String<WeightedMatch> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   901 |             buildErrorCurvePoints(errorCurves[readId], maxError, contig, record.rID, !hasFlagRC(record),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     902 |                                   readSeq, readId, endPos, readNameStore, options.matchN, TPatternSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:1252:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1252 |             res = matchesToErrorFunction(errorCurves, readAlignmentDistances, samReader, bamIOContext, readNameStore,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1253 |                                          refNameStore, faiIndex, options, MyersUkkonenReads(), Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, const TValue2&, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1964 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length, val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = unsigned int; TValue = SimpleType<unsigned char, Dna5_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11:   required from ‘int seqan::readRegion(String<TValue, TSpec>&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   426 |     resize(str, toRead, TValue());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22:   required from ‘int seqan::readSequence(String<TValue, TSpec>&, const FaiIndex&, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   505 |     return readRegion(str, index, refId, 0, sequenceLength(index, refId));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:869:29:   required from ‘int matchesToErrorFunction(TErrorCurves&, seqan::String<int>&, TStreamOrReader&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&, const TFormat&) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TStreamOrReader = seqan::RecordReader<std::basic_ifstream<char>, seqan::SinglePass<void> >; TFormat = seqan::Tag<seqan::Sam_>; TErrorCurves = std::map<int, seqan::String<WeightedMatch> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   869 |             if (readSequence(contig, faiIndex, faiRefId) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:1252:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1252 |             res = matchesToErrorFunction(errorCurves, readAlignmentDistances, samReader, bamIOContext, readNameStore,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1253 |                                          refNameStore, faiIndex, options, MyersUkkonenReads(), Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 14%] Linking CXX executable ../../../bin/rabema_build_gold_standard
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_build_gold_standard.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -o ../../../bin/rabema_build_gold_standard  -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 14%] Built target rabema_build_gold_standard
make  -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 16%] Building CXX object core/apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -MF CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o.d -o CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:28:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of ‘void seqan::findIntervals(const Graph<TSpec>&, const TPropertyMap&, TValue, String<TEmission>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<unsigned int, unsigned int>, StorePointsOnly>, Alloc<> >; TValue = unsigned int; TCargo = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1886:15:   required from ‘void seqan::findIntervals(const IntervalTree<TValue, TCargo>&, TValue, String<TAlphabet>&) [with TValue = unsigned int; TCargo = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1886 |         findIntervals(it.g,it.pm,query,result);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:635:22:   required from ‘int benchmarkReadResult(RabemaStats&, const seqan::String<seqan::BamAlignmentRecord>&, const seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::String<GsiRecord>&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   635 |         findIntervals(intervalTrees[seqId], lastPos, queryResult);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:976:42:   required from ‘int compareAlignedReadsToReference(RabemaStats&, TStreamOrReader&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, seqan::RecordReader<TStream, TPass>&, const RabemaEvaluationOptions&, const TPatternSpec&, const TFormat&) [with TStreamOrReader = seqan::RecordReader<std::basic_ifstream<char>, seqan::SinglePass<void> >; TGsiStream = seqan::Stream<seqan::Tag<seqan::GZFile_> >; TGsiStreamSpec = seqan::SinglePass<void>; TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TFormat = seqan::Tag<seqan::Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   976 |             int res = benchmarkReadResult(result, currentSamRecords, bamIOContext, currentGsiRecords, refNameStore,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     977 |                                           refNameStoreCache, refSeqs, refIdMapping, options, tagPattern,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     978 |                                           /*pairedEnd=*/ false);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1402:49:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1402 |             res = compareAlignedReadsToReference(result, samReader, bamIOContext, refNameStore, refNameStoreCache,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1403 |                                                  refSeqs, gsiReader, options, MyersUkkonenReads(), Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1827:26: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1827 |                 act_prop = property(pm,act_knot);
      |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<unsigned int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1838:43: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1838 |                                 next_prop = property(pm,targetVertex(it));
      |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<unsigned int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1859:51: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1859 |                                         next_prop = property(pm,targetVertex(it));
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<unsigned int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1311:16:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1311 |         reserve(refSeqs[i], sequenceLength(faiIndex, i), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h: In instantiation of ‘seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> > seqan::reverseString(THost&) [with THost = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55:   required from ‘static void seqan::FindBeginImpl_<seqan::Myers<seqan::FindPrefix, THasState, void> >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix> >; TNeedle = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   218 |                 setHost(pattern.data_findBeginPattern, reverseString(needle_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62:   required from ‘void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Myers<FindInfix> >; TNeedle = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   336 |         return FindBeginImpl_<TFindBeginPatternSpec>::_findBeginInit(pattern, needle_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16:   required from ‘void seqan::_patternFirstInit(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   591 |         _findBeginInit(pattern, needle);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19:   required from ‘void seqan::setHost(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, const TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   723 |         _patternFirstInit(pattern, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   497 |                 setHost(*this, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   108 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:611:51:   required from ‘int benchmarkReadResult(RabemaStats&, const seqan::String<seqan::BamAlignmentRecord>&, const seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::String<GsiRecord>&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   611 |                 Pattern<Dna5String, TPatternSpec> pattern(readSeq, -static_cast<int>(length(readSeq)) * 1000);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                   ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:976:42:   required from ‘int compareAlignedReadsToReference(RabemaStats&, TStreamOrReader&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, seqan::RecordReader<TStream, TPass>&, const RabemaEvaluationOptions&, const TPatternSpec&, const TFormat&) [with TStreamOrReader = seqan::RecordReader<std::basic_ifstream<char>, seqan::SinglePass<void> >; TGsiStream = seqan::Stream<seqan::Tag<seqan::GZFile_> >; TGsiStreamSpec = seqan::SinglePass<void>; TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TFormat = seqan::Tag<seqan::Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   976 |             int res = benchmarkReadResult(result, currentSamRecords, bamIOContext, currentGsiRecords, refNameStore,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     977 |                                           refNameStoreCache, refSeqs, refIdMapping, options, tagPattern,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     978 |                                           /*pairedEnd=*/ false);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1402:49:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1402 |             res = compareAlignedReadsToReference(result, samReader, bamIOContext, refNameStore, refNameStoreCache,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1403 |                                                  refSeqs, gsiReader, options, MyersUkkonenReads(), Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  624 |         return ModifiedString<THost, ModReverse>(host);
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:9:   required from ‘seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> > seqan::reverseString(THost&) [with THost = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   624 |         return ModifiedString<THost, ModReverse>(host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55:   required from ‘static void seqan::FindBeginImpl_<seqan::Myers<seqan::FindPrefix, THasState, void> >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix> >; TNeedle = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   218 |                 setHost(pattern.data_findBeginPattern, reverseString(needle_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                        ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62:   required from ‘void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Myers<FindInfix> >; TNeedle = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   336 |         return FindBeginImpl_<TFindBeginPatternSpec>::_findBeginInit(pattern, needle_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16:   required from ‘void seqan::_patternFirstInit(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   591 |         _findBeginInit(pattern, needle);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19:   required from ‘void seqan::setHost(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, const TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   723 |         _patternFirstInit(pattern, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   497 |                 setHost(*this, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   108 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:611:51:   required from ‘int benchmarkReadResult(RabemaStats&, const seqan::String<seqan::BamAlignmentRecord>&, const seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::String<GsiRecord>&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   611 |                 Pattern<Dna5String, TPatternSpec> pattern(readSeq, -static_cast<int>(length(readSeq)) * 1000);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                   ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:976:42:   required from ‘int compareAlignedReadsToReference(RabemaStats&, TStreamOrReader&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, seqan::RecordReader<TStream, TPass>&, const RabemaEvaluationOptions&, const TPatternSpec&, const TFormat&) [with TStreamOrReader = seqan::RecordReader<std::basic_ifstream<char>, seqan::SinglePass<void> >; TGsiStream = seqan::Stream<seqan::Tag<seqan::GZFile_> >; TGsiStreamSpec = seqan::SinglePass<void>; TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TFormat = seqan::Tag<seqan::Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   976 |             int res = benchmarkReadResult(result, currentSamRecords, bamIOContext, currentGsiRecords, refNameStore,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     977 |                                           refNameStoreCache, refSeqs, refIdMapping, options, tagPattern,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     978 |                                           /*pairedEnd=*/ false);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1402:49:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1402 |             res = compareAlignedReadsToReference(result, samReader, bamIOContext, refNameStore, refNameStoreCache,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1403 |                                                  refSeqs, gsiReader, options, MyersUkkonenReads(), Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 16%] Linking CXX executable ../../../bin/rabema_evaluate
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_evaluate.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -o ../../../bin/rabema_evaluate  -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 16%] Built target rabema_evaluate
make  -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 16%] Building CXX object core/apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o -MF CMakeFiles/rabema_do_search.dir/do_search.cpp.o.d -o CMakeFiles/rabema_do_search.dir/do_search.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:3:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:11:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:13:
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:105:10: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  105 |     std::binary_function<WeightedMatch, WeightedMatch, bool>
      |          ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:7:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:88:7:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    88 | class ModifiedIterator
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |       ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<WeightedMatch>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<WeightedMatch>, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:254:100:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   254 |             TModifiedString rRightInterval(infix(errorCurve, rightmostPos, offset + intervalLength));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<WeightedMatch>, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<WeightedMatch>, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<WeightedMatch>, InfixSegment>; TTagSpec = Standard_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:257:52:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   257 |             for (TModifiedStringIterator it = begin(rRightInterval, Standard()); it != end(rRightInterval, Standard()); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<WeightedMatch>, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<WeightedMatch>, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:507:97:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::end(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<WeightedMatch>, InfixSegment>; TTagSpec = Standard_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   507 |     typename Iterator<ModifiedString<THost, ModReverse>, Tag<TTagSpec> const >::Type temp_(begin(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                            ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:257:91:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   257 |             for (TModifiedStringIterator it = begin(rRightInterval, Standard()); it != end(rRightInterval, Standard()); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                        ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:23:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    23 |     Dna5String contig = argv[1];
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                               ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h: In instantiation of ‘seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> > seqan::reverseString(THost&) [with THost = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55:   required from ‘static void seqan::FindBeginImpl_<seqan::Myers<seqan::FindPrefix, THasState, void> >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix> >; TNeedle = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   218 |                 setHost(pattern.data_findBeginPattern, reverseString(needle_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62:   required from ‘void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Myers<FindInfix> >; TNeedle = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   336 |         return FindBeginImpl_<TFindBeginPatternSpec>::_findBeginInit(pattern, needle_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16:   required from ‘void seqan::_patternFirstInit(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   591 |         _findBeginInit(pattern, needle);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19:   required from ‘void seqan::setHost(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, const TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   723 |         _patternFirstInit(pattern, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   497 |                 setHost(*this, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   108 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:27:89:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:    27 |     Pattern<Dna5String, MyersUkkonenReads> pattern(read, -static_cast<int>(length(read)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                                                         ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  624 |         return ModifiedString<THost, ModReverse>(host);
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:9:   required from ‘seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> > seqan::reverseString(THost&) [with THost = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   624 |         return ModifiedString<THost, ModReverse>(host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55:   required from ‘static void seqan::FindBeginImpl_<seqan::Myers<seqan::FindPrefix, THasState, void> >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix> >; TNeedle = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   218 |                 setHost(pattern.data_findBeginPattern, reverseString(needle_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                        ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62:   required from ‘void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Myers<FindInfix> >; TNeedle = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   336 |         return FindBeginImpl_<TFindBeginPatternSpec>::_findBeginInit(pattern, needle_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16:   required from ‘void seqan::_patternFirstInit(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   591 |         _findBeginInit(pattern, needle);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19:   required from ‘void seqan::setHost(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, const TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   723 |         _patternFirstInit(pattern, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   497 |                 setHost(*this, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   108 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:27:89:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:    27 |     Pattern<Dna5String, MyersUkkonenReads> pattern(read, -static_cast<int>(length(read)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                                                         ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 16%] Linking CXX executable ../../../bin/rabema_do_search
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_do_search.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_do_search.dir/do_search.cpp.o -o ../../../bin/rabema_do_search  -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 16%] Built target rabema_do_search
make  -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 17%] Building CXX object core/apps/razers/CMakeFiles/razers.dir/razers.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/razers/CMakeFiles/razers.dir/razers.cpp.o -MF CMakeFiles/razers.dir/razers.cpp.o.d -o CMakeFiles/razers.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:28,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:715:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  715 |         struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:747:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  747 |         struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:779:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  779 |         struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h:30,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:51:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h:126:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  126 |         struct LessGPosRNo : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:55:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:237:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  237 |         struct LessPairErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp: In function ‘seqan::ArgumentParser::ParseResult extractOptions(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<>&, seqan::ParamChooserOptions&, seqan::CharString&, const seqan::ArgumentParser&)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:548:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  548 |     else if (endsWith(tmp, ".gff"))
      |          ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:551:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  551 |         if (isSet(parser, "shape"))
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:585:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  585 |     if ((getArgumentValueCount(parser, 1) == 0) && (stop = true))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  587 |         if ((options.minClippedLen < 0) && (stop = true))
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:   508 |                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                             ~~~~~~~~~~~^
     509 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     510 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     511 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1490:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1490 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1490:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1490 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:13:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:410:16:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   410 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:211:9:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   211 |         reserve(reads.concat, length(reads.concat), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:178:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   178 |                 if (!loadReads(readSet, readNames, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                           ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:410:16:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   410 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1875 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1718:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1718 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1718:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1718 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1875 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1490:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1490 |         TGenomeInfixRev         infRev(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   508 |                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                             ~~~~~~~~~~~^
     509 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     510 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     511 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1491:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1491 |         TReadRev                        readRev(readSet[rseqNo]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   508 |                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                             ~~~~~~~~~~~^
     509 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     510 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     511 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2306:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2306 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1718:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1718 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2306:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2306 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2309:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2309 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1718:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1718 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2309:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2309 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1823:41:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1823 |     finder.haystackEnd = begin(tmpHost) + (finder.endPos - length(pattern.shape) + 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:48:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1792 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1912 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:391:32:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   391 |         TReadSet &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                   ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1685:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1685 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:391:32:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   391 |         TReadSet &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                   ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1685:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1685 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:391:32:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   391 |         TReadSet &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                   ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1685:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1685 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = FindInfix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1474:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1474 |         while (find(myersFinder, myersPattern, minScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   508 |                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                             ~~~~~~~~~~~^
     509 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     510 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     511 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1492:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1492 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   508 |                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                             ~~~~~~~~~~~^
     509 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     510 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     511 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1128:31:   required from ‘static void seqan::AssignString_<TExpand>::assign_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1128 |             arrayConstructCopy(begin(source, Standard()), begin(source, Standard()) + part_length, begin(target, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1176:42:   required from ‘void seqan::assign(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1176 |     AssignString_<Tag<TExpand> >::assign_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1108:11:   required from ‘void seqan::assign(String<TValue, TSpec>&, const TSource&) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1108 |     assign(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:173:15:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >& seqan::String<TValue, seqan::Alloc<TSpec> >::operator=(const TSource&) [with TSource = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   173 |         assign(*this, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h:918:13:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   918 |                                                         gInf = infix(genomes[(*it).gseqNo], (*it).gBegin, (*it).gEnd);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:241:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   241 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:199:14:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   199 |                 appendValue(reads, seq[0], Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:178:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   178 |                 if (!loadReads(readSet, readNames, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:33:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1792 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1912 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18:   required from ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void; typename Parameter_<T>::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   793 |         return container(hostIterator(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1497:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1497 |         while (find(myersFinderRev, myersPatternRev, maxScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   508 |                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                             ~~~~~~~~~~~^
     509 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     510 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     511 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  294 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:199:14:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   199 |                 appendValue(reads, seq[0], Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:178:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   178 |                 if (!loadReads(readSet, readNames, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TSize = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   484 |                 resize(pattern, span, (ErrorAlphabet)SEQAN_MATCH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:679:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   679 |                         if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:679:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   679 |                         if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Value<TIterator>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TValue2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1018 |         create(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20:   required from ‘seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::Holder(const THostValue&) [with TValue = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   153 |         assignValue(*this, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:267:4:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:410:16:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   410 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, ErrorAlphabet_>*; TSource1 = SimpleType<unsigned char, ErrorAlphabet_>*; TSource2 = SimpleType<unsigned char, ErrorAlphabet_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:679:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   679 |                         if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /usr/include/c++/14/string:51:
In static member function ‘static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]’,
    inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:507:30,
    inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:534:42,
    inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:541:31,
    inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:637:7,
    inlined from ‘void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:855:16,
    inlined from ‘void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:865:29,
    inlined from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21,
    inlined from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31,
    inlined from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSource = const char; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1368:31,
    inlined from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42,
    inlined from ‘void seqan::append(TTarget&, TSource&) [with TTarget = String<char, Alloc<> >; TSource = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11,
    inlined from ‘void seqan::_parse_readShape(TFile&, TChar&, CharString&) [with TFile = std::basic_fstream<char>; TChar = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:861:15,
    inlined from ‘bool seqan::parseGappedParams(RazerSOptions<TSpec>&, TFile&, ParamChooserOptions&) [with TFile = std::basic_fstream<char>; TSpec = RazerSSpec<>]’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1068:25,
    inlined from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1342:26:
/usr/include/c++/14/bits/stl_algobase.h:438:30: warning: ‘void* __builtin_memmove(void*, const void*, long unsigned int)’ forming offset 1 is out of the bounds [0, 1] of object ‘c’ with type ‘char’ [-Warray-bounds=]
  438 |             __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
      |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:52:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h: In function ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1043:10: note: ‘c’ declared here
 1043 |     char c = _streamGet(file);
      |          ^
[ 17%] Building CXX object core/apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o -MF CMakeFiles/razers.dir/param_tabs.cpp.o.d -o CMakeFiles/razers.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/param_tabs.cpp
[ 19%] Linking CXX executable ../../../bin/razers
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers.dir/razers.cpp.o CMakeFiles/razers.dir/param_tabs.cpp.o -o ../../../bin/razers  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 19%] Built target razers
make  -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2/CMakeFiles/razers2.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 19%] Building CXX object core/apps/razers2/CMakeFiles/razers2.dir/razers.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/razers2/CMakeFiles/razers2.dir/razers.cpp.o -MF CMakeFiles/razers2.dir/razers.cpp.o.d -o CMakeFiles/razers2.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:28,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:488:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  488 |                 public ::std::binary_function < typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:535:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |                 public ::std::binary_function < typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:583:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  583 |                 public ::std::binary_function < typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:630:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  630 |                 public ::std::binary_function < typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:45:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:127:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  127 |                 public ::std::binary_function < typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:169:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  169 |                 public ::std::binary_function < typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:51:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:228:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  228 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp: In function ‘seqan::ArgumentParser::ParseResult extractOptions(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<>&, seqan::ParamChooserOptions&, seqan::CharString&, const seqan::ArgumentParser&)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:492:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  492 |     if (!isSet(parser, "read-naming") && options.outputFormat == 4)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:495:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  495 |         if (isSet(parser, "shape"))
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:529:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  529 |     if ((getArgumentValueCount(parser, 1) == 0) && (stop = true))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  532 |         options.errorRate = (100.0 - options.errorRate) / 100.0;
      |         ^~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:   971 |         TSeqIter seqIt = begin(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:       |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1097:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:  1097 |                         write(file, store, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   542 |                                                 if (matchVerify(verifierL, infix(genome, (TSignedGPos)(*it).i2.beginPos, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     543 |                                                                 matePairId, readSetL, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1000 |         TGenomeInfix origInf(inf);
      |                      ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1068 |                                 TGenomeInfixRev         infRev(inf);
      |                                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1128 |                 TGenomeInfixRev         infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1203:15:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1203 |                         matchVerify(verifier, infix(swiftFinder), verifier.m.readId, readSet, TSwiftSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1000 |         TGenomeInfix origInf(inf);
      |                      ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1068 |                                 TGenomeInfixRev         infRev(inf);
      |                                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1128 |                 TGenomeInfixRev         infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   542 |                                                 if (matchVerify(verifierL, infix(genome, (TSignedGPos)(*it).i2.beginPos, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     543 |                                                                 matePairId, readSetL, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1518:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1518 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1000 |         TGenomeInfix origInf(inf);
      |                      ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1068 |                                 TGenomeInfixRev         infRev(inf);
      |                                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1128 |                 TGenomeInfixRev         infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1203:15:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1203 |                         matchVerify(verifier, infix(swiftFinder), verifier.m.readId, readSet, TSwiftSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1518:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1518 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1000 |         TGenomeInfix origInf(inf);
      |                      ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1068 |                                 TGenomeInfixRev         infRev(inf);
      |                                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1128 |                 TGenomeInfixRev         infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   542 |                                                 if (matchVerify(verifierL, infix(genome, (TSignedGPos)(*it).i2.beginPos, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     543 |                                                                 matePairId, readSetL, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1521:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1521 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1000 |         TGenomeInfix origInf(inf);
      |                      ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1068 |                                 TGenomeInfixRev         infRev(inf);
      |                                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1128 |                 TGenomeInfixRev         infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1203:15:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1203 |                         matchVerify(verifier, infix(swiftFinder), verifier.m.readId, readSet, TSwiftSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1521:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1521 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1000 |         TGenomeInfix origInf(inf);
      |                      ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1068 |                                 TGenomeInfixRev         infRev(inf);
      |                                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1128 |                 TGenomeInfixRev         infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   971 |         TSeqIter seqIt = begin(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1097:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1097 |                         write(file, store, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:972:32:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   972 |         TSeqIter seqItEnd = end(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                             ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1097:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1097 |                         write(file, store, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:13:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:460:16:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   460 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>; TSource = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_dequeue.h:344:8:   required from ‘void seqan::pushBack(Dequeue<TValue, TSpec>&, const TValue&) [with TValue = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   344 |         assign(*me.data_back, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:510:14:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   510 |                                         pushBack(fifo, fL);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Triple<long int, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, seqan::AlignQualityStoreElement<signed char, void>, void>& seqan::Triple<long int, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, seqan::AlignQualityStoreElement<signed char, void>, void>::operator=(const seqan::Triple<long int, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, seqan::AlignQualityStoreElement<signed char, void>, void>&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because ‘seqan::Triple<long int, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, seqan::AlignQualityStoreElement<signed char, void>, void>’ has user-provided ‘seqan::Triple<T1, T2, T3, TSpec>::Triple(const seqan::Triple<T1, T2, T3, TSpec>&) [with T1 = long int; T2 = seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>; T3 = seqan::AlignQualityStoreElement<signed char, void>; TSpec = void]’
  162 |     inline Triple(Triple const & _p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:  1092 |                         write(file, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:201:9:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         reserve(store.readSeqStore.concat, length(store.readSeqStore.concat), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:167:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   167 |                 if (!loadReads(store, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                           ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:460:16:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   460 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1875 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1507 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1507 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1510 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1510 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1875 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1049:21:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1049 |                                 TReadPrefixRev          readRev(prefix(readSet[readId], ndlLength));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   542 |                                                 if (matchVerify(verifierL, infix(genome, (TSignedGPos)(*it).i2.beginPos, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     543 |                                                                 matePairId, readSetL, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:22:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1068 |                                 TGenomeInfixRev         infRev(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   542 |                                                 if (matchVerify(verifierL, infix(genome, (TSignedGPos)(*it).i2.beginPos, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     543 |                                                                 matePairId, readSetL, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1518:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1518 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1518:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1518 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1521:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1521 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1521:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1521 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, Tag<TExpand>) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1189 |     return begin(me, tag_) + pos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1169 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20:   required from ‘void seqan::insertGaps(Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition, TCount) [with TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TPosition = long int; TCount = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   465 |     TIter it = iter(gaps, clippedViewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:628:15:   required from ‘void seqan::insertGap(Gaps<TSequence, TSpec>&, TPosition) [with TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >; TPosition = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   628 |     insertGaps(gaps, clippedViewPos, 1u);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2582:18:   required from ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TScore = Score<int, Tag<Simple_> >; TShrinkMatches = False]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2582 |                                                                 insertGap(gaps, insPos - rBegin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1053:48:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1053 |                 convertMatchesToGlobalAlignment(store, scoreType, False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1092 |                         write(file, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:90:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1092 |                         write(file, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1823:41:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1823 |     finder.haystackEnd = begin(tmpHost) + (finder.endPos - length(pattern.shape) + 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:48:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1792 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1912 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<long int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1092 |                         write(file, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<long int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1092 |                         write(file, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:434:32:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   434 |         TReadSet        &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                          ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1190:32:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1190 |         TReadSet                &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                                 ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:434:32:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   434 |         TReadSet        &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                          ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1507 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1190:32:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1190 |         TReadSet                &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                 ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1507 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:434:32:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   434 |         TReadSet        &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                          ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1510 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1190:32:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1190 |         TReadSet                &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                 ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1510 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1015:13:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1015 |         while (find(myersFinder, myersPattern, minScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   542 |                                                 if (matchVerify(verifierL, infix(genome, (TSignedGPos)(*it).i2.beginPos, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     543 |                                                                 matePairId, readSetL, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1069:22:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1069 |                                 TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   542 |                                                 if (matchVerify(verifierL, infix(genome, (TSignedGPos)(*it).i2.beginPos, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     543 |                                                                 matePairId, readSetL, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1092 |                         write(file, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<long int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1092 |                         write(file, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = long int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:481:11:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   481 |         assignSeq(firstRead, multiFasta[0], format);                    // read the first sequence
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:33:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1792 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1912 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18:   required from ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void; typename Parameter_<T>::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   793 |         return container(hostIterator(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1073:16:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1073 |                                 while (find(myersFinderRev, myersPatternRev, /*score*/maxScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   542 |                                                 if (matchVerify(verifierL, infix(genome, (TSignedGPos)(*it).i2.beginPos, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     543 |                                                                 matePairId, readSetL, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  294 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type seqan::appendMatePair(FragmentStore<TSpec, TConfig>&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; typename Size<typename FragmentStore<TSpec, TConfig>::TMatePairStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TMatePairStore = String<MatePairStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1657 |         appendValue(me.readSeqStore, read1, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:194:17:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   194 |                 appendMatePair(store, seq[0], seq[1], id[0], id[1]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:167:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   167 |                 if (!loadReads(store, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TSize = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   484 |                 resize(pattern, span, (ErrorAlphabet)SEQAN_MATCH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:617:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   617 |                         if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type seqan::appendMatePair(FragmentStore<TSpec, TConfig>&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; typename Size<typename FragmentStore<TSpec, TConfig>::TMatePairStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TMatePairStore = String<MatePairStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1657 |         appendValue(me.readSeqStore, read1, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:194:17:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |                 appendMatePair(store, seq[0], seq[1], id[0], id[1]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:167:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   167 |                 if (!loadReads(store, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1507 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1507 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1507 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1507 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1510 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1510 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1510 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1510 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:617:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   617 |                         if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:605:23:   required from ‘void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*; TSource1 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*; TSource2 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   605 |         valueConstruct(target_begin, getValue(source_begin));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1420:31:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, False) [with TValueSource = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TValueTarget = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1420 |     _arrayConstructCopyDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TValueTarget = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:1435:18:   required from ‘typename seqan::Size<seqan::StringSet<TString, TSpec> >::Type seqan::resize(StringSet<TString, TSpec>&, TSize, Tag<TUsage>) [with TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TSize = unsigned int; TExpand = TagExact_; typename Size<StringSet<TString, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1435 |     return resize(me.strings, new_size, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:731:8:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   731 |         resize(readSetL, pairCount, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Value<TIterator>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TValue2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1018 |         create(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20:   required from ‘seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::Holder(const THostValue&) [with TValue = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   153 |         assignValue(*this, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:267:4:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:460:16:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   460 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, ErrorAlphabet_>*; TSource1 = SimpleType<unsigned char, ErrorAlphabet_>*; TSource2 = SimpleType<unsigned char, ErrorAlphabet_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:617:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   617 |                         if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>; TSource = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:268:11:   required from ‘void seqan::move(TTarget&, TSource&) [with TTarget = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>; TSource = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   268 |     assign(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1056:13:   required from ‘void seqan::_arrayMoveForwardDefault(TSource1, TSource2, TTarget) [with TTarget = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>*; TSource1 = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>*; TSource2 = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1056 |         move(*target_begin, *source_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1600:29:   required from ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, False) [with TValue = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1600 |     _arrayMoveForwardDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1211:25:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>*; TSource1 = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>*; TSource2 = Triple<long int, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, AlignQualityStoreElement<signed char, void>, void>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1211 |         arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1295:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:510:14:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   510 |                                         pushBack(fifo, fL);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Triple<long int, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, seqan::AlignQualityStoreElement<signed char, void>, void>& seqan::Triple<long int, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, seqan::AlignQualityStoreElement<signed char, void>, void>::operator=(const seqan::Triple<long int, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, seqan::AlignQualityStoreElement<signed char, void>, void>&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because ‘seqan::Triple<long int, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, seqan::AlignQualityStoreElement<signed char, void>, void>’ has user-provided ‘seqan::Triple<T1, T2, T3, TSpec>::Triple(const seqan::Triple<T1, T2, T3, TSpec>&) [with T1 = long int; T2 = seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>; T3 = seqan::AlignQualityStoreElement<signed char, void>; TSpec = void]’
  162 |     inline Triple(Triple const & _p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:51:
In static member function ‘static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]’,
    inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:507:30,
    inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:534:42,
    inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:541:31,
    inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:637:7,
    inlined from ‘void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:855:16,
    inlined from ‘void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:865:29,
    inlined from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21,
    inlined from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31,
    inlined from ‘static void seqan::AssignString_<TExpand>::assign_(TTarget&, TSource&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSource = const char; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1128:31,
    inlined from ‘void seqan::assign(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1176:42,
    inlined from ‘void seqan::assign(String<TValue, TSpec>&, TSource&) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1099:11,
    inlined from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(TSource&) [with TSource = char; TValue = char; TSpec = void]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:100:19,
    inlined from ‘seqan::String<char, seqan::Alloc<> > seqan::_parseReadFilepath(TFile&, TChar&) [with TFile = std::basic_ifstream<char>; TChar = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_parsing.h:330:15,
    inlined from ‘int getGenomeFileNameList(seqan::CharString, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:90:50:
/usr/include/c++/14/bits/stl_algobase.h:438:30: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’ forming offset 1 is out of the bounds [0, 1] of object ‘c’ with type ‘char’ [-Warray-bounds=]
  438 |             __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
      |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp: In function ‘int getGenomeFileNameList(seqan::CharString, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:73:14: note: ‘c’ declared here
   73 |         char c = _streamGet(file);
      |              ^
In static member function ‘static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]’,
    inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:507:30,
    inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:534:42,
    inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:541:31,
    inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:637:7,
    inlined from ‘void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:855:16,
    inlined from ‘void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:865:29,
    inlined from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21,
    inlined from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31,
    inlined from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSource = const char; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1368:31,
    inlined from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42,
    inlined from ‘void seqan::append(TTarget&, TSource&) [with TTarget = String<char, Alloc<> >; TSource = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11,
    inlined from ‘seqan::String<char, seqan::Alloc<> > seqan::_parseReadFilepath(TFile&, TChar&) [with TFile = std::basic_ifstream<char>; TChar = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_parsing.h:338:9,
    inlined from ‘int getGenomeFileNameList(seqan::CharString, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:90:50:
/usr/include/c++/14/bits/stl_algobase.h:438:30: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’ forming offset 1 is out of the bounds [0, 1] of object ‘c’ with type ‘char’ [-Warray-bounds=]
  438 |             __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
      |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp: In function ‘int getGenomeFileNameList(seqan::CharString, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:73:14: note: ‘c’ declared here
   73 |         char c = _streamGet(file);
      |              ^
In static member function ‘static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]’,
    inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:507:30,
    inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:534:42,
    inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:541:31,
    inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:637:7,
    inlined from ‘void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:855:16,
    inlined from ‘void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:865:29,
    inlined from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21,
    inlined from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31,
    inlined from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSource = const char; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1368:31,
    inlined from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42,
    inlined from ‘void seqan::append(TTarget&, TSource&) [with TTarget = String<char, Alloc<> >; TSource = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11,
    inlined from ‘void seqan::_parse_readShape(TFile&, TChar&, CharString&) [with TFile = std::basic_fstream<char>; TChar = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:861:15,
    inlined from ‘bool seqan::parseGappedParams(RazerSOptions<TSpec>&, TFile&, ParamChooserOptions&) [with TFile = std::basic_fstream<char>; TSpec = RazerSSpec<>]’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1068:25,
    inlined from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1342:26:
/usr/include/c++/14/bits/stl_algobase.h:438:30: warning: ‘void* __builtin_memmove(void*, const void*, long unsigned int)’ forming offset 1 is out of the bounds [0, 1] of object ‘c’ with type ‘char’ [-Warray-bounds=]
  438 |             __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
      |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:46:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h: In function ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1043:10: note: ‘c’ declared here
 1043 |     char c = _streamGet(file);
      |          ^
[ 19%] Building CXX object core/apps/razers2/CMakeFiles/razers2.dir/param_tabs.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/razers2/CMakeFiles/razers2.dir/param_tabs.cpp.o -MF CMakeFiles/razers2.dir/param_tabs.cpp.o.d -o CMakeFiles/razers2.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/param_tabs.cpp
[ 20%] Linking CXX executable ../../../bin/razers2
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers2.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers2.dir/razers.cpp.o CMakeFiles/razers2.dir/param_tabs.cpp.o -o ../../../bin/razers2  -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 20%] Built target razers2
make  -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 22%] Building CXX object core/apps/sak/CMakeFiles/sak.dir/sak.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/sak/CMakeFiles/sak.dir/sak.cpp.o -MF CMakeFiles/sak.dir/sak.cpp.o.d -o CMakeFiles/sak.dir/sak.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:64:   required from ‘int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream<char>; TIdString = String<char, Alloc<> >; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   379 |         for (typename Iterator<TSeqString const, Rooted>::Type it = begin(seq, Rooted()); !atEnd(it); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                                                ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:501:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   501 |                     if (writeRecord(*outPtr, id, infix(seqCopy, infixBegin, infixEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     502 |                                     infix(quals, infixBegin, infixEnd), seqan::Fastq(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     503 |                                     options.seqOutOptions) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:64:   required from ‘int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream<char>; TIdString = String<char, Alloc<> >; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TSeqString = Segment<String<char, Alloc<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   379 |         for (typename Iterator<TSeqString const, Rooted>::Type it = begin(seq, Rooted()); !atEnd(it); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:523:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   523 |                     if (writeRecord(*outPtr, id, infix(seq, infixBegin, infixEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     524 |                                     infix(quals, infixBegin, infixEnd), seqan::Fastq(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     525 |                                     options.seqOutOptions) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:74:   required from ‘int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream<char>; TIdString = String<char, Alloc<> >; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   379 |         for (typename Iterator<TSeqString const, Rooted>::Type it = begin(seq, Rooted()); !atEnd(it); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                     ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:501:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   501 |                     if (writeRecord(*outPtr, id, infix(seqCopy, infixBegin, infixEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     502 |                                     infix(quals, infixBegin, infixEnd), seqan::Fastq(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     503 |                                     options.seqOutOptions) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:74:   required from ‘int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream<char>; TIdString = String<char, Alloc<> >; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TSeqString = Segment<String<char, Alloc<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   379 |         for (typename Iterator<TSeqString const, Rooted>::Type it = begin(seq, Rooted()); !atEnd(it); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                     ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:523:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   523 |                     if (writeRecord(*outPtr, id, infix(seq, infixBegin, infixEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     524 |                                     infix(quals, infixBegin, infixEnd), seqan::Fastq(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     525 |                                     options.seqOutOptions) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:361:63:   required from ‘int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream<char>; TIdString = String<char, Alloc<> >; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   361 |         typename Iterator<TSeqString const>::Type it_end = end(seq);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                            ~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:501:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   501 |                     if (writeRecord(*outPtr, id, infix(seqCopy, infixBegin, infixEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     502 |                                     infix(quals, infixBegin, infixEnd), seqan::Fastq(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     503 |                                     options.seqOutOptions) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:361:63:   required from ‘int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream<char>; TIdString = String<char, Alloc<> >; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TSeqString = Segment<String<char, Alloc<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   361 |         typename Iterator<TSeqString const>::Type it_end = end(seq);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                            ~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:523:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   523 |                     if (writeRecord(*outPtr, id, infix(seq, infixBegin, infixEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     524 |                                     infix(quals, infixBegin, infixEnd), seqan::Fastq(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     525 |                                     options.seqOutOptions) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:74:   required from ‘int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream<char>; TIdString = String<char, Alloc<> >; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   379 |         for (typename Iterator<TSeqString const, Rooted>::Type it = begin(seq, Rooted()); !atEnd(it); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                     ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:501:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   501 |                     if (writeRecord(*outPtr, id, infix(seqCopy, infixBegin, infixEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     502 |                                     infix(quals, infixBegin, infixEnd), seqan::Fastq(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     503 |                                     options.seqOutOptions) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:74:   required from ‘int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream<char>; TIdString = String<char, Alloc<> >; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TSeqString = Segment<String<char, Alloc<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   379 |         for (typename Iterator<TSeqString const, Rooted>::Type it = begin(seq, Rooted()); !atEnd(it); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                     ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:523:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   523 |                     if (writeRecord(*outPtr, id, infix(seq, infixBegin, infixEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     524 |                                     infix(quals, infixBegin, infixEnd), seqan::Fastq(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     525 |                                     options.seqOutOptions) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:492:45:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   492 |                 seqan::Dna5String seqCopy = seq;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 22%] Linking CXX executable ../../../bin/sak
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && /usr/bin/cmake -E cmake_link_script CMakeFiles/sak.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sak.dir/sak.cpp.o -o ../../../bin/sak  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 22%] Built target sak
make  -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 24%] Building CXX object core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -MF CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o.d -o CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_tree.h:65,
                 from /usr/include/c++/14/map:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from ‘int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader<TFile, DoublePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFile = String<char, MMap<> >; TSpec = Tag<StringReader_>; TTag = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   262 |     reserve(seq, seqLength, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from ‘int seqan::readRecord(TIdString&, TSeqString&, RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFile = String<char, MMap<> >; TPass = DoublePass<Tag<StringReader_> >; Fasta = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   557 |     int res = _clearAndReserveMemory(meta, seq, reader, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:501:40:   required from ‘int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFormatTag = seqan::Tag<seqan::TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   501 |                 res = seqan::readRecord(id, seq, *_mmapReaderDoublePass, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                       ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:697:38:   required from ‘int seqan::readRecord(TId&, TSequence&, SequenceStream&) [with TId = String<char, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   697 |         res = seqIO._impl->readRecord(id, seq, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |               ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:155:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   155 |         if (readRecord(id, seq, seqStream) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:46:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/new_allocator.h:34,
                 from /usr/include/c++/14/x86_64-redhat-linux/bits/c++allocator.h:33,
                 from /usr/include/c++/14/bits/allocator.h:46,
                 from /usr/include/c++/14/bits/stl_tree.h:64:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 24%] Linking CXX executable ../../../bin/sam2matrix
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam2matrix.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -o ../../../bin/sam2matrix  -lrt -L/usr/lib64 -lz 
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make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake "--color="
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make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 25%] Building CXX object core/apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o -MF CMakeFiles/samcat.dir/samcat.cpp.o.d -o CMakeFiles/samcat.dir/samcat.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:37:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:35:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 25%] Linking CXX executable ../../../bin/samcat
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat && /usr/bin/cmake -E cmake_link_script CMakeFiles/samcat.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/samcat.dir/samcat.cpp.o -o ../../../bin/samcat  -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 25%] Built target samcat
make  -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 25%] Building CXX object core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -MF CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o.d -o CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:37,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:22:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:18:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:39:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  343 |         public ::std::binary_function<TVertexDescriptor, TCargo, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function ‘void seqan::njTree(const String<TValue, TSpec>&, Graph<Tree<TCargo, TSpec> >&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  148 |     for (unsigned i = 0; i < length(mat); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  152 |         String<__int64> av;    // Average branch length to a combined node
      |         ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, StringSet<TSequence, TSpec>&, TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  416 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  420 |         TString seq;
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  534 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  538 |         String<TValue> mat;
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  880 |         TName seq1;
      |         ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, Graph<Tree<TCargo, TSpec> >&, TNames&, NewickFormat)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  985 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  988 |         TVertexDescriptor lastVertex = nilVertex;
      |         ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:25:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:40:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of ‘void seqan::findIntervalsExcludeTouching(const Graph<TSpec>&, const TPropertyMap&, TValue, String<TEmission>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<int, Pair<unsigned int, unsigned int, BitPacked<31, 1> > > > >; TValue = long unsigned int; TCargo = Pair<unsigned int, unsigned int, BitPacked<31, 1> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:576:34:   required from ‘void seqan::matchRefinement(TAlignmentString&, StringSet<TSequence, TSpec>&, TScore&, TOutGraph&, typename Size<typename Value<TIterator>::Type>::Type, TAnnotation&, Tag<TExpand>) [with TAlignmentString = String<Fragment<> >; TAnnotation = bool; TOutGraph = Graph<Alignment<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, long unsigned int, Tag<Default_> > >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Dependent<Tag<TagInsist_> >; TScore = long unsigned int; TTagSpec = TagExactRefinement_; typename Size<typename Value<TIterator>::Type>::Type = long unsigned int; typename Value<TIterator>::Type = Fragment<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   576 |                                         findIntervalsExcludeTouching(gs[seq_i_pos],pms[seq_i_pos],node_i,relevant_segments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:700:17:   required from ‘void seqan::matchRefinement(TFragmentString&, StringSet<TSequence, TSpec>&, TOutGraph&) [with TFragmentString = String<Fragment<> >; TOutGraph = Graph<Alignment<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, long unsigned int, Tag<Default_> > >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Dependent<Tag<TagInsist_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   700 |         matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:229:17:   required from ‘void seqan::buildAlignmentGraph(String<TValue, TSpec>&, Graph<Alignment<TStringSet, TCargo, TSpec2> >&, FrequencyCounting) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TCargo = long unsigned int; TSpec = Tag<Default_>; FrequencyCounting = const Tag<FrequencyCounting_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   229 |         matchRefinement(matches,strSet,outGraph);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:115:21:   required from ‘void seqan::evaluateAlignment(const MsaOptions<TAlphabet, TScore>&) [with TAlphabet = SimpleType<unsigned char, Dna5_>; TScore = Score<int, ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   115 |         buildAlignmentGraph(matches, g, FrequencyCounting() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26:   required from ‘void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   258 |         evaluateAlignment(msaOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:282:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   282 |         _initMsaParams<Dna5>(parser, sc);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2068:26: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >&)’ is deprecated [-Wdeprecated-copy]
 2068 |                 act_prop = property(pm,act_knot);
      |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > >]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2079:43: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >&)’ is deprecated [-Wdeprecated-copy]
 2079 |                                 next_prop = property(pm,targetVertex(it));
      |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > >]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2100:51: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >&)’ is deprecated [-Wdeprecated-copy]
 2100 |                                         next_prop = property(pm,targetVertex(it));
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > >]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:21:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17:   required from ‘bool seqan::convertAlignment(const Graph<Alignment<TStringSet, TCargo, TSpec> >&, TMatrix&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TCargo = long unsigned int; TSpec = Tag<Default_>; TMatrix = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1892 |                 TStringSetStr str = label(g,it->second);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                               ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:145:22:   required from ‘void seqan::evaluateAlignment(const MsaOptions<TAlphabet, TScore>&) [with TAlphabet = SimpleType<unsigned char, Dna5_>; TScore = Score<int, ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   145 |         if (convertAlignment(g, mat)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |             ~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26:   required from ‘void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   258 |         evaluateAlignment(msaOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:282:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   282 |         _initMsaParams<Dna5>(parser, sc);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Rna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Rna5_>; TValueTarget = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Rna5_>; TValueTarget = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Rna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Rna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17:   required from ‘bool seqan::convertAlignment(const Graph<Alignment<TStringSet, TCargo, TSpec> >&, TMatrix&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TCargo = long unsigned int; TSpec = Tag<Default_>; TMatrix = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1892 |                 TStringSetStr str = label(g,it->second);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                               ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:145:22:   required from ‘void seqan::evaluateAlignment(const MsaOptions<TAlphabet, TScore>&) [with TAlphabet = SimpleType<unsigned char, Rna5_>; TScore = Score<int, ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   145 |         if (convertAlignment(g, mat)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26:   required from ‘void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   258 |         evaluateAlignment(msaOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:302:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   302 |         _initMsaParams<Rna5>(parser, sc);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Rna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Rna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, AminoAcid_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, AminoAcid_>; TValueTarget = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, AminoAcid_>; TValueTarget = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, AminoAcid_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, AminoAcid_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17:   required from ‘bool seqan::convertAlignment(const Graph<Alignment<TStringSet, TCargo, TSpec> >&, TMatrix&) [with TStringSet = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TCargo = long unsigned int; TSpec = Tag<Default_>; TMatrix = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1892 |                 TStringSetStr str = label(g,it->second);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                               ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:145:22:   required from ‘void seqan::evaluateAlignment(const MsaOptions<TAlphabet, TScore>&) [with TAlphabet = SimpleType<unsigned char, AminoAcid_>; TScore = Score<int, ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   145 |         if (convertAlignment(g, mat)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26:   required from ‘void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   258 |         evaluateAlignment(msaOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:322:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   322 |         _initMsaParams<AminoAcid>(parser, sc);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::AminoAcid_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::AminoAcid_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 25%] Linking CXX executable ../../../bin/seqan_tcoffee
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_tcoffee.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -o ../../../bin/seqan_tcoffee  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 25%] Built target seqan_tcoffee
make  -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons/CMakeFiles/seqcons.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 27%] Building CXX object core/apps/seqcons/CMakeFiles/seqcons.dir/seqcons.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/seqcons/CMakeFiles/seqcons.dir/seqcons.cpp.o -MF CMakeFiles/seqcons.dir/seqcons.cpp.o.d -o CMakeFiles/seqcons.dir/seqcons.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:37,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:40:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:42:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  343 |         public ::std::binary_function<TVertexDescriptor, TCargo, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function ‘void seqan::njTree(const String<TValue, TSpec>&, Graph<Tree<TCargo, TSpec> >&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  148 |     for (unsigned i = 0; i < length(mat); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  152 |         String<__int64> av;    // Average branch length to a combined node
      |         ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, StringSet<TSequence, TSpec>&, TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  416 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  420 |         TString seq;
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  534 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  538 |         String<TValue> mat;
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  880 |         TName seq1;
      |         ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, Graph<Tree<TCargo, TSpec> >&, TNames&, NewickFormat)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  985 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  988 |         TVertexDescriptor lastVertex = nilVertex;
      |         ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function ‘void seqan::getGappedConsensus(FragmentStore<TSpec, TConfig>&, TGappedConsensus&, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  387 |                 for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i)
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 |                         diff = (itGaps->gapPos - itGaps->seqPos);
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   91 |         public ::std::unary_function<Pair<TSize, TSize>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  102 |         public ::std::unary_function<Pair<TSize, Triple<TSize, TSize, TSize> >, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp: In function ‘seqan::ArgumentParser::ParseResult parseCommandLine(seqan::ConsensusOptions&, int, const char**)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:94:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   94 |     if (res != seqan::ArgumentParser::PARSE_OK)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:98:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   98 |         getOptionValue(consOpt.readsfile, parser, "reads");
      |         ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp: In function ‘int main(int, const char**)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:240:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  240 |     if (res != seqan::ArgumentParser::PARSE_OK)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  244 |         typedef FragmentStore<> TFragmentStore;
      |         ^~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note:   971 |         TSeqIter seqIt = begin(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note:       |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:207:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note:   207 |                 write(strmWrite, fragStore, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   971 |         TSeqIter seqIt = begin(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:207:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   207 |                 write(strmWrite, fragStore, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:972:32:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   972 |         TSeqIter seqItEnd = end(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                             ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:207:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   207 |                 write(strmWrite, fragStore, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of ‘void seqan::findIntervalsExcludeTouching(const Graph<TSpec>&, const TPropertyMap&, TValue, String<TEmission>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<int, Pair<unsigned int, unsigned int, BitPacked<31, 1> > > > >; TValue = long unsigned int; TCargo = Pair<unsigned int, unsigned int, BitPacked<31, 1> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:576:34:   required from ‘void seqan::matchRefinement(TAlignmentString&, StringSet<TSequence, TSpec>&, TScore&, TOutGraph&, typename Size<typename Value<TIterator>::Type>::Type, TAnnotation&, Tag<TExpand>) [with TAlignmentString = String<Fragment<> >; TAnnotation = bool; TOutGraph = Graph<Alignment<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Dependent<Tag<TagInsist_> > >, long unsigned int, Tag<Default_> > >; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSetSpec = Dependent<Tag<TagInsist_> >; TScore = long unsigned int; TTagSpec = TagExactRefinement_; typename Size<typename Value<TIterator>::Type>::Type = long unsigned int; typename Value<TIterator>::Type = Fragment<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   576 |                                         findIntervalsExcludeTouching(gs[seq_i_pos],pms[seq_i_pos],node_i,relevant_segments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:700:17:   required from ‘void seqan::matchRefinement(TFragmentString&, StringSet<TSequence, TSpec>&, TOutGraph&) [with TFragmentString = String<Fragment<> >; TOutGraph = Graph<Alignment<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Dependent<Tag<TagInsist_> > >, long unsigned int, Tag<Default_> > >; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSetSpec = Dependent<Tag<TagInsist_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   700 |         matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:182:17:   required from ‘void seqan::buildAlignmentGraph(String<TValue, TSpec>&, String<TValue2, TSpec2>&, Graph<Alignment<TStringSet, TCargo, TSpec> >&, FractionalScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Dependent<Tag<TagInsist_> > >; TCargo = long unsigned int; TSpec = Tag<Default_>; FractionalScore = const Tag<FractionalScore_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   182 |         matchRefinement(matches,strSet,outGraph);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:311:21:   required from ‘void seqan::buildAlignmentGraph(String<TValue, TSpec>&, String<TValue2, TSpec2>&, Graph<Alignment<TStringSet, TCargo, TSpec> >&, const TScore&, ReScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Dependent<Tag<TagInsist_> > >; TCargo = long unsigned int; TSpec = Tag<Default_>; TScore = Score<int, Tag<Simple_> >; ReScore = const Tag<ReScore_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   311 |         buildAlignmentGraph(matches, scores, outGraph, FractionalScore() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:564:21:   required from ‘void seqan::consensusAlignment(Graph<Alignment<TStringSet, TCargo, TSpec> >&, String<Pair<TSize, TSize> >&, const TConfigOptions&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Dependent<Tag<TagInsist_> > >; TCargo = void; TSpec = const Tag<WithoutEdgeId_>; TSize = long unsigned int; TConfigOptions = ConsensusOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   564 |         buildAlignmentGraph(matches, scores, g, consOpt.sc, ReScore() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:278:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   278 |                                 consensusAlignment(gOut, begEndPos, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2068:26: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >&)’ is deprecated [-Wdeprecated-copy]
 2068 |                 act_prop = property(pm,act_knot);
      |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > >]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2079:43: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >&)’ is deprecated [-Wdeprecated-copy]
 2079 |                                 next_prop = property(pm,targetVertex(it));
      |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > >]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2100:51: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >&)’ is deprecated [-Wdeprecated-copy]
 2100 |                                         next_prop = property(pm,targetVertex(it));
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > >]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   220 |                 write(strmWrite, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   971 |         TSeqIter seqIt = begin(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:207:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   207 |                 write(strmWrite, fragStore, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   220 |                 write(strmWrite, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:90:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   220 |                 write(strmWrite, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<long int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   220 |                 write(strmWrite, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<long int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   220 |                 write(strmWrite, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, Tag<TExpand>) [with T = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1189 |     return begin(me, tag_) + pos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1169 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20:   required from ‘void seqan::insertGaps(Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition, TCount) [with TSequence = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TPosition = long int; TCount = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   465 |     TIter it = iter(gaps, clippedViewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2801:19:   required from ‘void seqan::convertPairWiseToGlobalAlignment(FragmentStore<TSpec, TConfig>&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TContigGapsString = StringSet<String<GapAnchor<long int>, Alloc<> >, Owner<ConcatDirect<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2801 |                                                                 insertGaps(gaps, insPos - rBegin, blkLen);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45:   required from ‘void seqan::_readImpl(TStreamOrReader&, FragmentStore<TSpec, TConfig>&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   459 |             convertPairWiseToGlobalAlignment(fragStore, contigAnchorGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   474 |         _readImpl(reader, fragStore, Sam(), importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   496 |         read(file, fragStore, Sam(), FragStoreImportFlags());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:184:7:   required from ‘int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   184 |                 read(strmReads, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   250 |     int ret = loadFiles(fragStore, numberOfContigs, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |               ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TValue = const seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1477 |             typename Size<T>::Type new_length = reserve(me, me_length + 1, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TValue = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_realign.h:776:15:   required from ‘void seqan::reAlign(FragmentStore<TSpec, TConfig>&, TScore&, TId, TMethod, TBandwidth, bool) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TScore = Score<int, WeightedConsensusScore<Score<int, const Tag<FractionalScore_> >, Score<int, const Tag<ConsensusScore_> > > >; TId = long unsigned int; TMethod = int; TBandwidth = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   776 |                         appendValue(contigEl.seq, (TAlphabet)value(itConsensus), Generous() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:263:12:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   263 |                                 reAlign(fragStore, combinedScore, currentContig, consOpt.rmethod, consOpt.bandwidth, consOpt.include);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   220 |                 write(strmWrite, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<long int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   220 |                 write(strmWrite, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(FragmentStore<TSpec, TConfig>&, const TRead&, TId) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; TId = unsigned int; typename Size<typename FragmentStore<TSpec, TConfig>::TReadStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TReadStore = String<ReadStoreElement<void>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1396 |         appendValue(me.readSeqStore, read, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:1545:14:   required from ‘int seqan::_convertSimpleReadFile(TFile&, FragmentStore<TSpec, TConfig>&, TFilePath&, bool) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TFilePath = const std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1545 |                         appendRead(fragStore, seq, fragId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:166:29:   required from ‘int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   166 |                 if (_convertSimpleReadFile(strmReads, fragStore, consOpt.readsfile, moveToFront) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   250 |     int ret = loadFiles(fragStore, numberOfContigs, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |               ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>*; TParam = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>; typename Value<TIterator>::Type = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>; TValue2 = const Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>; TSource = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1018 |         create(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2738:18:   required from ‘void seqan::convertPairWiseToGlobalAlignment(FragmentStore<TSpec, TConfig>&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TContigGapsString = StringSet<String<GapAnchor<long int>, Alloc<> >, Owner<ConcatDirect<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2738 |                 TContigGapsPW           contigGapsPW(/*contigInfix, */gaps[(*it).id]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45:   required from ‘void seqan::_readImpl(TStreamOrReader&, FragmentStore<TSpec, TConfig>&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   459 |             convertPairWiseToGlobalAlignment(fragStore, contigAnchorGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   474 |         _readImpl(reader, fragStore, Sam(), importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   496 |         read(file, fragStore, Sam(), FragStoreImportFlags());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:184:7:   required from ‘int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   184 |                 read(strmReads, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   250 |     int ret = loadFiles(fragStore, numberOfContigs, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |               ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Value<TIterator>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TValue2 = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSource = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1018 |         create(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2739:15:   required from ‘void seqan::convertPairWiseToGlobalAlignment(FragmentStore<TSpec, TConfig>&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TContigGapsString = StringSet<String<GapAnchor<long int>, Alloc<> >, Owner<ConcatDirect<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2739 |                 TReadGaps                       readGaps(store.readSeqStore[(*it).readId], (*it).gaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                 ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45:   required from ‘void seqan::_readImpl(TStreamOrReader&, FragmentStore<TSpec, TConfig>&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   459 |             convertPairWiseToGlobalAlignment(fragStore, contigAnchorGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   474 |         _readImpl(reader, fragStore, Sam(), importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   496 |         read(file, fragStore, Sam(), FragStoreImportFlags());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:184:7:   required from ‘int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   184 |                 read(strmReads, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   250 |     int ret = loadFiles(fragStore, numberOfContigs, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |               ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(FragmentStore<TSpec, TConfig>&, const TRead&, TId) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; TId = unsigned int; typename Size<typename FragmentStore<TSpec, TConfig>::TReadStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TReadStore = String<ReadStoreElement<void>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1396 |         appendValue(me.readSeqStore, read, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:1545:14:   required from ‘int seqan::_convertSimpleReadFile(TFile&, FragmentStore<TSpec, TConfig>&, TFilePath&, bool) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TFilePath = const std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1545 |                         appendRead(fragStore, seq, fragId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:166:29:   required from ‘int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   166 |                 if (_convertSimpleReadFile(strmReads, fragStore, consOpt.readsfile, moveToFront) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   250 |     int ret = loadFiles(fragStore, numberOfContigs, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |               ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:56,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function ‘unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String<CigarElement<> >; TGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
  534 |                 insertGaps(it, cigar[i].count);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here
  535 |             case 'I':
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function ‘unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String<CigarElement<> >; TGaps = Gaps<Nothing, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
  534 |                 insertGaps(it, cigar[i].count);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here
  535 |             case 'I':
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function ‘unsigned int seqan::cigarToGapAnchorContig(const TCigarString&, TGaps&) [with TCigarString = String<CigarElement<> >; TGaps = Gaps<Nothing, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:564:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
  564 |                 insertGaps(it, cigar[i].count);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:565:13: note: here
  565 |             case 'D':
      |             ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<double>; TValue = double; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = double; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = double; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = double; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘typename seqan::Size<T>::Type seqan::reserve(T&, const TSize&) [with T = String<double>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2091:19,
    inlined from ‘void seqan::upgmaTree(Graph<Undirected<TCargo, TSpec> >&, Graph<Tree<TCargo, TSpec> >&, TTag) [with TValue = double; TSpec1 = Tag<Default_>; TCargo = double; TSpec2 = Tag<Default_>; TTag = Tag<UpgmaWeightAvg_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:854:9,
    inlined from ‘void seqan::upgmaTree(TDistance&, Graph<Tree<TCargo, TSpec> >&) [with TDistance = Graph<Undirected<double> >; TCargo = double; TSpec = Tag<Default_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:965:11,
    inlined from ‘void seqan::consensusAlignment(Graph<Alignment<TStringSet, TCargo, TSpec> >&, String<Pair<TSize, TSize> >&, const TConfigOptions&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Dependent<Tag<TagInsist_> > >; TCargo = void; TSpec = const Tag<WithoutEdgeId_>; TSize = long unsigned int; TConfigOptions = ConsensusOptions]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:570:11:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551600’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void seqan::consensusAlignment(Graph<Alignment<TStringSet, TCargo, TSpec> >&, String<Pair<TSize, TSize> >&, const TConfigOptions&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Dependent<Tag<TagInsist_> > >; TCargo = void; TSpec = const Tag<WithoutEdgeId_>; TSize = long unsigned int; TConfigOptions = ConsensusOptions]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 27%] Linking CXX executable ../../../bin/seqcons
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqcons.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/seqcons.dir/seqcons.cpp.o -o ../../../bin/seqcons  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 27%] Built target seqcons
make  -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 27%] Building CXX object core/apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o -MF CMakeFiles/snp_store.dir/snp_store.cpp.o.d -o CMakeFiles/snp_store.dir/snp_store.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:32:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:31:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:33:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  343 |         public ::std::binary_function<TVertexDescriptor, TCargo, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function ‘void seqan::njTree(const String<TValue, TSpec>&, Graph<Tree<TCargo, TSpec> >&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  148 |     for (unsigned i = 0; i < length(mat); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  152 |         String<__int64> av;    // Average branch length to a combined node
      |         ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, StringSet<TSequence, TSpec>&, TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  416 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  420 |         TString seq;
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  534 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  538 |         String<TValue> mat;
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  880 |         TName seq1;
      |         ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, Graph<Tree<TCargo, TSpec> >&, TNames&, NewickFormat)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  985 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  988 |         TVertexDescriptor lastVertex = nilVertex;
      |         ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function ‘void seqan::getGappedConsensus(FragmentStore<TSpec, TConfig>&, TGappedConsensus&, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  387 |                 for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i)
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 |                         diff = (itGaps->gapPos - itGaps->seqPos);
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   91 |         public ::std::unary_function<Pair<TSize, TSize>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  102 |         public ::std::unary_function<Pair<TSize, Triple<TSize, TSize, TSize> >, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:53:
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:356:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  356 |         public ::std::binary_function < typename Value<TMatches>::Type, typename Value<TMatchQualities>::Type, bool >
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:405:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  405 |     struct LessPosLen : public ::std::binary_function < TPosLen, TPosLen, bool >
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:420:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  420 |         public ::std::binary_function < typename Value<TMatches>::Type, typename Value<TMatchQualities>::Type, bool >
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:468:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  468 |     struct LessId : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:481:37: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  481 |     struct LessGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:504:40: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  504 |     struct LessGPosEnd : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                        ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:523:42: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  523 |     struct LessGPosEndOa : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                          ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:545:36: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  545 |     struct HigherQ : public ::std::binary_function < TQual, TQual, bool >
      |                                    ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_base.h: In instantiation of ‘seqan::Pair<T1, T2, TSpec>::Pair(const T1&, const T2&) [with T1 = unsigned int; T2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = void]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:5235:46:   required from ‘void seqan::dumpShortIndelPolymorphismsBatch(TFragmentStore&, TReadCigars&, TGenome&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TOptions&) [with TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCigars = StringSet<String<Pair<char, int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TGenomeName = String<char, Alloc<> >; TFile = std::basic_ofstream<char>; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  5235 |                                              Pair<unsigned,TReadInf>(1,rInf)));
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:997:74:   required from ‘int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   997 |                     if(!options.realign) dumpShortIndelPolymorphismsBatch(fragmentStore, readCigars, fragmentStore.contigStore[0].seq, genomeNames[i], startCoord, currentWindowBegin, currentWindowEnd, indelFileStream, options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1442 |     int result = detectSNPs(options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                  ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_base.h:143:53: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  143 |     Pair(T1 const & _i1, T2 const & _i2) : i1(_i1), i2(_i2) {}
      |                                                     ^~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, Tag<TExpand>) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1189 |     return begin(me, tag_) + pos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1169 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:4144:36:   required from ‘void seqan::dumpVariantsRealignBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCounts = String<unsigned int, Alloc<> >; TReadCigars = StringSet<String<Pair<char, int> > >; TGenomeName = String<char, Alloc<> >; TFile = std::basic_ofstream<char>; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  4144 |         TContigGapIter refIt = iter(referenceGaps,candidateViewPos-refStart);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:2564:41:   required from ‘void seqan::dumpVariantsRealignBatchWrap(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCigars = StringSet<String<Pair<char, int> > >; TReadCounts = String<unsigned int, Alloc<> >; TGenomeName = String<char, Alloc<> >; TFile = std::basic_ofstream<char>; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2564 |                 dumpVariantsRealignBatch(fragStoreGroup,readCigars,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
    2565 |                     readCounts,genomeID,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~ 
    2566 |                     groupStartCoord,groupStartPos,groupEndPos,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2567 |                     fileSNPs,fileIndels,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1012:53:   required from ‘int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1012 |                         dumpVariantsRealignBatchWrap(fragmentStore, readCigars, readCounts, genomeNames[i], startCoord, currentWindowBegin, currentWindowEnd, snpFileStream,indelFileStream,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1442 |     int result = detectSNPs(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1200:28:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TExpand> >::Type seqan::iter(const T&, TPos, Tag<TExpand>) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator<const T, const Tag<TExpand> >::Type = Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1200 |     return begin(me, tag_) + pos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1178:16:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(const T&, TPos) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1178 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:450:22:   required from ‘bool seqan::isGap(const Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition) [with TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TPosition = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   450 |     return isGap(iter(gaps, clippedViewPos));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:4505:72:   required from ‘void seqan::dumpVariantsRealignBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCounts = String<unsigned int, Alloc<> >; TReadCigars = StringSet<String<Pair<char, int> > >; TGenomeName = String<char, Alloc<> >; TFile = std::basic_ofstream<char>; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  4505 |                 ((indelConsens[candidateViewPos].i1 & 7) == 6  && isGap(referenceGaps, candidateViewPos-refStart)))  // position in consensus is the same as in reference
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                                   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:2564:41:   required from ‘void seqan::dumpVariantsRealignBatchWrap(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCigars = StringSet<String<Pair<char, int> > >; TReadCounts = String<unsigned int, Alloc<> >; TGenomeName = String<char, Alloc<> >; TFile = std::basic_ofstream<char>; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2564 |                 dumpVariantsRealignBatch(fragStoreGroup,readCigars,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
    2565 |                     readCounts,genomeID,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                     ~~~~~~~~~~~~~~~~~~~~ 
    2566 |                     groupStartCoord,groupStartPos,groupEndPos,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2567 |                     fileSNPs,fileIndels,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1012:53:   required from ‘int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1012 |                         dumpVariantsRealignBatchWrap(fragmentStore, readCigars, readCounts, genomeNames[i], startCoord, currentWindowBegin, currentWindowEnd, snpFileStream,indelFileStream,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1442 |     int result = detectSNPs(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/tokenize.h:943:12:   required from ‘int seqan::readNChars(TBuffer&, RecordReader<TStream, TPass>&, unsigned int) [with TBuffer = String<SimpleType<unsigned char, Dna5Q_> >; TStream = std::basic_fstream<char>; TPass = SinglePass<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   943 |     reserve(buffer, n, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:1004:39:   required from ‘int seqan::readMatchesFromGFF_Batch(TFile&, TFragmentStore&, TReadCounts&, String<Pair<int> >&, StringSet<TSequence>&, TGenome&, TGenomeIdMap&, TSize, TContigPos, TContigPos, TValue&, TOptions&, bool) [with TFile = std::basic_fstream<char>*; TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCounts = String<unsigned int, Alloc<> >; TCigarStr = String<Pair<char, int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TGenomeIdMap = std::map<String<char, Alloc<> >, unsigned int>; TContigPos = long int; TSize = unsigned int; TValue = int; TOptions = SNPCallingOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1004 |                         if (readNChars(curr_read, reader, 1) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:903:54:   required from ‘int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   903 |                     result = readMatchesFromGFF_Batch(readFileStreams[j], fragmentStore, readCounts, readClips,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     904 |                                               readCigars, genomes[i], gIdStringToIdNumMap,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     905 |                                               i, currentWindowBegin, currentWindowEnd, highestChrId[j], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1442 |     int result = detectSNPs(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:4809:28:   required from ‘void seqan::dumpSNPsBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TOptions&) [with TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCigars = StringSet<String<Pair<char, int> > >; TReadCounts = String<unsigned int, Alloc<> >; TGenomeName = String<char, Alloc<> >; TFile = std::basic_ofstream<char>; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  4809 |                 Dna5String gInf = infix(genome, currentBegin, currentEnd);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1014:38:   required from ‘int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |                         dumpSNPsBatch(fragmentStore, readCigars, readCounts, genomeNames[i], startCoord, currentWindowBegin, currentWindowEnd, snpFileStream,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1442 |     int result = detectSNPs(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:51:
In static member function ‘static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]’,
    inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:507:30,
    inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:534:42,
    inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:541:31,
    inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:637:7,
    inlined from ‘void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:855:16,
    inlined from ‘void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:865:29,
    inlined from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21,
    inlined from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31,
    inlined from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSource = const char; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1368:31,
    inlined from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42,
    inlined from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<char, Alloc<> >; TSource = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11,
    inlined from ‘int seqan::readMatchesFromGFF_Batch(TFile&, TFragmentStore&, TReadCounts&, String<Pair<int> >&, StringSet<TSequence>&, TGenome&, TGenomeIdMap&, TSize, TContigPos, TContigPos, TValue&, TOptions&, bool) [with TFile = std::basic_fstream<char>*; TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCounts = String<unsigned int, Alloc<> >; TCigarStr = String<Pair<char, int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TGenomeIdMap = std::map<String<char, Alloc<> >, unsigned int>; TContigPos = long int; TSize = unsigned int; TValue = int; TOptions = SNPCallingOptions<>]’ at /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:1082:39:
/usr/include/c++/14/bits/stl_algobase.h:438:30: warning: ‘void* __builtin_memmove(void*, const void*, long unsigned int)’ forming offset 1 is out of the bounds [0, 1] of object ‘<anonymous>’ with type ‘const char’ [-Warray-bounds=]
  438 |             __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
      |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h: In function ‘int seqan::readMatchesFromGFF_Batch(TFile&, TFragmentStore&, TReadCounts&, String<Pair<int> >&, StringSet<TSequence>&, TGenome&, TGenomeIdMap&, TSize, TContigPos, TContigPos, TValue&, TOptions&, bool) [with TFile = std::basic_fstream<char>*; TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCounts = String<unsigned int, Alloc<> >; TCigarStr = String<Pair<char, int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TGenomeIdMap = std::map<String<char, Alloc<> >, unsigned int>; TContigPos = long int; TSize = unsigned int; TValue = int; TOptions = SNPCallingOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:1082:39: note: ‘<anonymous>’ declared here
 1082 |                                 append(temp_read,'A');  // will be replaced with correct base in "mutations" loop
      |                                 ~~~~~~^~~~~~~~~~~~~~~
[ 29%] Linking CXX executable ../../../bin/snp_store
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store && /usr/bin/cmake -E cmake_link_script CMakeFiles/snp_store.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/snp_store.dir/snp_store.cpp.o -o ../../../bin/snp_store  -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 29%] Built target snp_store
make  -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 29%] Building CXX object core/apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o -MF CMakeFiles/splazers.dir/splazers.cpp.o.d -o CMakeFiles/splazers.dir/splazers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:28,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:712:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  712 |         struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:740:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  740 |         struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:766:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  766 |         struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:784:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  784 | struct LessSplicedScore : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:806:45: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  806 | struct LessSplicedScoreGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:51:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:126:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  126 |         struct LessGPosRNo : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:52:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h: In function ‘int seqan::qualityDistributionFromPrbFile(TFile&, TDistribution&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:198:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  198 |     if (skipWhitespaces(reader) != 0)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:201:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  201 |         int kickout = 0;
      |         ^~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h: In function ‘int seqan::qualityDistributionFromFastQIntFile(TFile&, TDistribution&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:373:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  373 |     if (pm_options.verbose)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:376:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  376 |         resize(avg,pm_options.totalN,(TFloat)0.0);
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h: In function ‘bool seqan::parseGappedParams(RazerSOptions<TSpec>&, TFile&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:934:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  934 |     if (value(reader) == 'e')
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:938:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  938 |         bool atLeastOneFound = false;
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:59:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:525:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         struct LessPairErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp: In function ‘int main(int, const char**)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:564:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  564 |     for (unsigned i = 0; i < length(readFileNames); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:567:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  567 |         if(length(readFileNames) == 2)
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:615:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  615 |     if ((getArgumentValueCount(parser, 1) == 0) && (stop = true))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  617 |         if ((options.minClippedLen < 0) && (stop = true))
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h: In instantiation of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&; THost = seqan::ModifiedString<const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; typename seqan::RemoveReference<THost_>::Type = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_shortcuts.h:584:9:   required from ‘typename seqan::ReverseComplementString<const THost>::Type seqan::reverseComplementString(const THost&) [with THost = Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename ReverseComplementString<const THost>::Type = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note:   584 |         return TRevComp(host);
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note:       |                ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:40:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note:  1589 |                                     file << reverseComplementString(reads[currReadNo]) << "\t*\t";
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note:   305 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, readRegions, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  161 |             _host(std::forward<THost_>(host))
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  165 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:62:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:  2570 |                                 if (!matchVerify(mR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                      ~~~~~~~~~~~^~~~
    2571 |                                         infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2572 |                                         rseqNo,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                         ~~~~~~~  
    2573 |                                         readSet,//readSetR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                         ~~~~~~~~~~~~~~~~~~~
    2574 |                                         forwardPatternsR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                         ~~~~~~~~~~~~~~~~~
    2575 |                                         options,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                         ~~~~~~~~ 
    2576 |                                         TSwiftSpec(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                         ~~~~~~~~~~~~~
    2577 |                                         LongestSuffix()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                         ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:684:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  684 |         TGenomeInfix oriInf = inf;
      |                      ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:692:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  692 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestPrefix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2618:20:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2618 |                                 if (matchVerify( (*it).i2,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                     ~~~~~~~~~~~^~~~~~~~~~~
    2619 |                                                 infix(genome, (*it).i2.gBegin, maxEndPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2620 |                                                 rseqNo,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                 ~~~~~~~
    2621 |                                                 readSet, //readSetL
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                 ~~~~~~~~~~~~~~~~~~~
    2622 |                                                 forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                 ~~~~~~~~~~~~~~~~~
    2623 |                                                 options,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                 ~~~~~~~~
    2624 |                                                 TSwiftSpec(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                 ~~~~~~~~~~~~~
    2625 |                                                 LongestPrefix()) &&
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                 ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:684:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  684 |         TGenomeInfix oriInf = inf;
      |                      ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:692:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  692 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   775 |                                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                             ~~~~~~~~~~~^
     776 |                                                         (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     777 |                                                         rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     778 |                                                         options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2253 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1466:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1466 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1694:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1694 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2036:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2036 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2183:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2183 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2253 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1466:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1466 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:166:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   166 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&; THost = seqan::ModifiedString<const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; typename seqan::RemoveReference<THost_>::Type = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   161 |             _host(std::forward<THost_>(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_shortcuts.h:584:9:   required from ‘typename seqan::ReverseComplementString<const THost>::Type seqan::reverseComplementString(const THost&) [with THost = Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename ReverseComplementString<const THost>::Type = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   584 |         return TRevComp(host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:40:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1589 |                                     file << reverseComplementString(reads[currReadNo]) << "\t*\t";
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   305 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, readRegions, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:13:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2446:16:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2446 |         TSwiftFinderL swiftFinderL(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:13:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:683:16:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   683 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:516:9:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   516 |         reserve(reads.concat, length(reads.concat), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:204:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   204 |                 if (!loadReads(readSet, readNames, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                           ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2446:16:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2446 |         TSwiftFinderL swiftFinderL(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1875 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3068:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3068 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, onegappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3070:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3070 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, gappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1875 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:692:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   692 |         TGenomeInfixRev         infRev(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2570 |                                 if (!matchVerify(mR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~^~~~
    2571 |                                         infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2572 |                                         rseqNo,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~  
    2573 |                                         readSet,//readSetR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~
    2574 |                                         forwardPatternsR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~
    2575 |                                         options,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~ 
    2576 |                                         TSwiftSpec(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~
    2577 |                                         LongestSuffix()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<const seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(const Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<const Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:537:26:   required from ‘void seqan::setHost(ModifiedString<THost, TSpec>&, const THost&) [with THost = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Tag<ModReverse_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   537 |     me._host = _toPointer(host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:696:10:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   696 |                 setHost(readRev,infix(readSet[rseqNo],length(readSet[rseqNo])-options.minMatchLen,length(readSet[rseqNo])));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2570 |                                 if (!matchVerify(mR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~^~~~
    2571 |                                         infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2572 |                                         rseqNo,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~  
    2573 |                                         readSet,//readSetR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~
    2574 |                                         forwardPatternsR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~
    2575 |                                         options,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~ 
    2576 |                                         TSwiftSpec(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~
    2577 |                                         LongestSuffix()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:477:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  477 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3101:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3101 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, onegappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3103:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3103 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, gappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                           ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:683:16:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   683 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1875 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2245:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2245 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2248:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2248 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1875 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2253 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1466:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1466 |         TGenomeInfixRev         infRev(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   775 |                                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                             ~~~~~~~~~~~^
     776 |                                                         (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     777 |                                                         rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     778 |                                                         options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2253 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2256:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2256 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2259:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2259 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:111:7:   required from ‘void seqan::_streamWriteSeq(TTarget&, const TSource&, True) [with TTarget = std::basic_ofstream<char>; TSource = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   111 | class ModifiedIterator<THost, ModView<TFunctor> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:219:17:   required from ‘void seqan::_streamWrite(TTarget&, const TSource&) [with TTarget = std::basic_ofstream<char>; TSource = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   219 |         _streamWriteSeq(target, source, typename IsSequence<TSource const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:282:14:   required from ‘void seqan::write(TFile&, const TData&, const TString&, Raw) [with TFile = std::basic_ofstream<char>; TData = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; TString = char [1]; Raw = Tag<TagRaw_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   282 |         _streamWrite(file, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:343:7:   required from ‘void seqan::write(TFile&, const TData&) [with TFile = std::basic_ofstream<char>; TData = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   343 |         write(file, data, "", Raw());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:807:10:   required from ‘TStream& seqan::operator<<(TStream&, const ModifiedString<THost, TSpec>&) [with TStream = std::basic_ofstream<char>; THost = ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >; TSpec = Tag<ModReverse_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   807 |     write(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:14:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1589 |                                     file << reverseComplementString(reads[currReadNo]) << "\t*\t";
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   305 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, readRegions, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>; TIntegral = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1823:41:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1823 |     finder.haystackEnd = begin(tmpHost) + (finder.endPos - length(pattern.shape) + 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(const Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1171:18:   required from ‘typename seqan::Parameter_<typename seqan::Haystack<const TObject>::Type>::Type seqan::haystack(const TObject&) [with TObject = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; typename Parameter_<typename Haystack<const TObject>::Type>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Haystack<const TObject>::Type = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1171 |         return container(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1628:38:   required from ‘seqan::Pair<typename seqan::Position<seqan::Finder<THaystack, seqan::Swift<TSpec> > >::Type> seqan::positionRange(const Finder<THaystack, Swift<TSpec> >&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; typename Position<Finder<THaystack, Swift<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1628 |     __int64 textEnd = length(haystack(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1639:25:   required from ‘seqan::Pair<typename seqan::Position<seqan::Finder<THaystack, seqan::Swift<TSpec> > >::Type> seqan::positionRange(Finder<THaystack, Swift<TSpec> >&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; typename Position<Finder<THaystack, Swift<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1639 |     return positionRange(const_cast<Finder<THaystack, Swift<TSpec> > const &>(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2516:26:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2516 |                                 gPair = positionRange(swiftFinderL);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:801:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  801 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(const Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1171:18:   required from ‘typename seqan::Parameter_<typename seqan::Haystack<const TObject>::Type>::Type seqan::haystack(const TObject&) [with TObject = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; typename Parameter_<typename Haystack<const TObject>::Type>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Haystack<const TObject>::Type = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1171 |         return container(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1628:38:   required from ‘seqan::Pair<typename seqan::Position<seqan::Finder<THaystack, seqan::Swift<TSpec> > >::Type> seqan::positionRange(const Finder<THaystack, Swift<TSpec> >&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Tag<SwiftSemiGlobal_<void> >; typename Position<Finder<THaystack, Swift<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1628 |     __int64 textEnd = length(haystack(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1639:25:   required from ‘seqan::Pair<typename seqan::Position<seqan::Finder<THaystack, seqan::Swift<TSpec> > >::Type> seqan::positionRange(Finder<THaystack, Swift<TSpec> >&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Tag<SwiftSemiGlobal_<void> >; typename Position<Finder<THaystack, Swift<TSpec> > >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1639 |     return positionRange(const_cast<Finder<THaystack, Swift<TSpec> > const &>(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2516:26:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2516 |                                 gPair = positionRange(swiftFinderL);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:801:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  801 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1823:41:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1823 |     finder.haystackEnd = begin(tmpHost) + (finder.endPos - length(pattern.shape) + 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:48:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1792 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1912 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2253 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2410:33:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2410 |         TReadSetL &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                    ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2411:33:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2411 |         TReadSetR &readSetR = host(host(swiftPatternR));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                    ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3068:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  3068 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, onegappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2411:33:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2411 |         TReadSetR &readSetR = host(host(swiftPatternR));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                    ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3070:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3070 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, gappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:670:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   670 |         while (find(myersFinder, myersPattern, minScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2570 |                                 if (!matchVerify(mR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                      ~~~~~~~~~~~^~~~
    2571 |                                         infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2572 |                                         rseqNo,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                         ~~~~~~~  
    2573 |                                         readSet,//readSetR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~
    2574 |                                         forwardPatternsR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                         ~~~~~~~~~~~~~~~~~
    2575 |                                         options,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                         ~~~~~~~~ 
    2576 |                                         TSwiftSpec(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                         ~~~~~~~~~~~~~
    2577 |                                         LongestSuffix()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                         ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:693:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   693 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2570 |                                 if (!matchVerify(mR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~^~~~
    2571 |                                         infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2572 |                                         rseqNo,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~  
    2573 |                                         readSet,//readSetR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~
    2574 |                                         forwardPatternsR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~
    2575 |                                         options,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~ 
    2576 |                                         TSwiftSpec(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~
    2577 |                                         LongestSuffix()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:1735:14:   required from ‘bool seqan::combineLeftRight(TMatch&, TMatch&, TRead&, TGenome&, RazerSOptions<TSpec>&, char, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TRead = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1735 |                 appendValue(strL,genomeInfL);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2728:25:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2728 |                                           !combineLeftRight(mRtmp,mLtmp,read,genome,options,orientation,TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:664:32:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   664 |         TReadSet &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                   ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:664:32:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   664 |         TReadSet &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                   ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2245:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2245 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:664:32:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   664 |         TReadSet &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                   ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2248:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2248 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = FindInfix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1450:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1450 |         while (find(myersFinder, myersPattern, minScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   775 |                                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                             ~~~~~~~~~~~^
     776 |                                                         (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     777 |                                                         rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     778 |                                                         options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2253 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1468:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1468 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   775 |                                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                             ~~~~~~~~~~~^
     776 |                                                         (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     777 |                                                         rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     778 |                                                         options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2253 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1128:31:   required from ‘static void seqan::AssignString_<TExpand>::assign_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1128 |             arrayConstructCopy(begin(source, Standard()), begin(source, Standard()) + part_length, begin(target, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1176:42:   required from ‘void seqan::assign(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1176 |     AssignString_<Tag<TExpand> >::assign_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1108:11:   required from ‘void seqan::assign(String<TValue, TSpec>&, const TSource&) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1108 |     assign(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:173:15:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >& seqan::String<TValue, seqan::Alloc<TSpec> >::operator=(const TSource&) [with TSource = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   173 |         assign(*this, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1102:13:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1102 |                                                         gInf = infix(genomes[(*it).gseqNo], (*it).gBegin, (*it).gEnd);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   305 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, readRegions, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:508:14:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   508 |                 appendValue(reads, seq[0], Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:204:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   204 |                 if (!loadReads(readSet, readNames, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:33:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1792 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1912 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18:   required from ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void; typename Parameter_<T>::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   793 |         return container(hostIterator(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:704:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   704 |         while (find(myersFinderRev, myersPatternRev, maxScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2570 |                                 if (!matchVerify(mR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                      ~~~~~~~~~~~^~~~
    2571 |                                         infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2572 |                                         rseqNo,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~  
    2573 |                                         readSet,//readSetR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~~~~~~~~~~~~
    2574 |                                         forwardPatternsR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~~~~~~~~~~
    2575 |                                         options,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~ 
    2576 |                                         TSwiftSpec(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~~~~~~
    2577 |                                         LongestSuffix()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  294 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:33:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1792 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1912 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18:   required from ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void; typename Parameter_<T>::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   793 |         return container(hostIterator(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1473:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<long int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1473 |         while (find(myersFinderRev, myersPatternRev, maxScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   775 |                                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                             ~~~~~~~~~~~^
     776 |                                                         (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     777 |                                                         rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     778 |                                                         options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2253 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  294 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:670:20:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, TSpec>, const seqan::Tag<TExpand> >::Type seqan::end(ModifiedString<THost, TSpec>&, Tag<TExpand>) [with THost = const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > >; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, TSpec>, const Tag<TExpand> >::Type = ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   670 |     TResult tmp(end(host(me), tag_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:452:102:   required from ‘typename seqan::Iterator<const seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(const ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >; TTagSpec = Standard_; typename Iterator<const ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   452 |     typename Iterator< ModifiedString<THost, ModReverse> const, Tag<TTagSpec> const >::Type temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                                                                   ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:185:61:   required from ‘void seqan::_streamWriteSeq(TTarget&, const TSource&, True) [with TTarget = std::basic_ofstream<char>; TSource = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   185 |         typename Iterator<TSource const, Standard>::Type it = begin(source, Standard());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                               ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:219:17:   required from ‘void seqan::_streamWrite(TTarget&, const TSource&) [with TTarget = std::basic_ofstream<char>; TSource = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   219 |         _streamWriteSeq(target, source, typename IsSequence<TSource const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:282:14:   required from ‘void seqan::write(TFile&, const TData&, const TString&, Raw) [with TFile = std::basic_ofstream<char>; TData = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; TString = char [1]; Raw = Tag<TagRaw_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   282 |         _streamWrite(file, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:343:7:   required from ‘void seqan::write(TFile&, const TData&) [with TFile = std::basic_ofstream<char>; TData = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   343 |         write(file, data, "", Raw());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:807:10:   required from ‘TStream& seqan::operator<<(TStream&, const ModifiedString<THost, TSpec>&) [with TStream = std::basic_ofstream<char>; THost = ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >; TSpec = Tag<ModReverse_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   807 |     write(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:14:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1589 |                                     file << reverseComplementString(reads[currReadNo]) << "\t*\t";
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   305 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, readRegions, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:626:22:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, TSpec>, const seqan::Tag<TExpand> >::Type seqan::begin(ModifiedString<THost, TSpec>&, Tag<TExpand>) [with THost = const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > >; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, TSpec>, const Tag<TExpand> >::Type = ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   626 |     TResult tmp(begin(host(me), tag_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:497:103:   required from ‘typename seqan::Iterator<const seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::end(const ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >; TTagSpec = Standard_; typename Iterator<const ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   497 |     typename Iterator<ModifiedString<THost, ModReverse> const, Tag<TTagSpec> const >::Type temp_(begin(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                                  ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:186:63:   required from ‘void seqan::_streamWriteSeq(TTarget&, const TSource&, True) [with TTarget = std::basic_ofstream<char>; TSource = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   186 |         typename Iterator<TSource const, Standard>::Type it_end = end(source, Standard());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                   ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:219:17:   required from ‘void seqan::_streamWrite(TTarget&, const TSource&) [with TTarget = std::basic_ofstream<char>; TSource = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   219 |         _streamWriteSeq(target, source, typename IsSequence<TSource const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:282:14:   required from ‘void seqan::write(TFile&, const TData&, const TString&, Raw) [with TFile = std::basic_ofstream<char>; TData = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; TString = char [1]; Raw = Tag<TagRaw_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   282 |         _streamWrite(file, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:343:7:   required from ‘void seqan::write(TFile&, const TData&) [with TFile = std::basic_ofstream<char>; TData = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   343 |         write(file, data, "", Raw());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:807:10:   required from ‘TStream& seqan::operator<<(TStream&, const ModifiedString<THost, TSpec>&) [with TStream = std::basic_ofstream<char>; THost = ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >; TSpec = Tag<ModReverse_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   807 |     write(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:14:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1589 |                                     file << reverseComplementString(reads[currReadNo]) << "\t*\t";
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   305 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, readRegions, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:508:14:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   508 |                 appendValue(reads, seq[0], Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:204:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   204 |                 if (!loadReads(readSet, readNames, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2728:25:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2728 |                                           !combineLeftRight(mRtmp,mLtmp,read,genome,options,orientation,TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TSize = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, float>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<float>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   484 |                 resize(pattern, span, (ErrorAlphabet)SEQAN_MATCH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<float>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<float>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:778:30:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   778 |                                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:702:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   702 |                                 if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3068:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  3068 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, onegappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3068:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  3068 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, onegappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3070:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  3070 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, gappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3070:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  3070 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, gappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2245:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2245 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2245:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2245 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2248:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2248 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2248:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2248 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, float>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<float>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<float>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<float>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:778:30:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   778 |                                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:702:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   702 |                                 if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Value<TIterator>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TValue2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1018 |         create(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20:   required from ‘seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::Holder(const THostValue&) [with TValue = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   153 |         assignValue(*this, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:267:4:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:683:16:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   683 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, ErrorAlphabet_>*; TSource1 = SimpleType<unsigned char, ErrorAlphabet_>*; TSource2 = SimpleType<unsigned char, ErrorAlphabet_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, float>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<float>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<float>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<float>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:778:30:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   778 |                                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:702:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   702 |                                 if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, TraceBack_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, TraceBack_>; TValueTarget = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, TraceBack_>; TValueTarget = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, TraceBack_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, TraceBack_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2728:25:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2728 |                                           !combineLeftRight(mRtmp,mLtmp,read,genome,options,orientation,TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<long int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<long int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, long int, BitPacked<2, 64> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::TraceBack_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::TraceBack_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 29%] Linking CXX executable ../../../bin/splazers
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers && /usr/bin/cmake -E cmake_link_script CMakeFiles/splazers.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/splazers.dir/splazers.cpp.o -o ../../../bin/splazers  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 29%] Built target splazers
make  -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 30%] Building CXX object core/apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o -MF CMakeFiles/stellar.dir/stellar.cpp.o.d -o CMakeFiles/stellar.dir/stellar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:30:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_types.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_types.h:154:32: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 | struct LessPos : public ::std::binary_function <TMatch, TMatch, bool> {
      |                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_types.h:206:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  206 | struct LessLength : public ::std::binary_function <TMatch, TMatch, bool> {
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:125:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  125 |     public::std::unary_function<AminoAcid, AminoAcid>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/usr/include/c++/14/bits/stl_function.h:117:12: note:   718 |         mainWithOptions(options, String<Dna>());
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBestLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    58 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      59 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      60 |                 databaseID, databaseStrand, matches, BestLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobalExtend_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    66 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      67 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      68 |                 databaseID, databaseStrand, matches, BandedGlobalExtend());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBestLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    58 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      59 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      60 |                 databaseID, databaseStrand, matches, BestLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobalExtend_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    66 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      67 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      68 |                 databaseID, databaseStrand, matches, BandedGlobalExtend());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBestLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    58 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      59 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      60 |                 databaseID, databaseStrand, matches, BestLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobalExtend_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    66 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      67 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      68 |                 databaseID, databaseStrand, matches, BandedGlobalExtend());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBestLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    58 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      59 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      60 |                 databaseID, databaseStrand, matches, BestLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobalExtend_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    66 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      67 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      68 |                 databaseID, databaseStrand, matches, BandedGlobalExtend());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBestLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    58 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      59 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      60 |                 databaseID, databaseStrand, matches, BestLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobalExtend_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    66 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      67 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      68 |                 databaseID, databaseStrand, matches, BandedGlobalExtend());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBestLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    58 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      59 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      60 |                 databaseID, databaseStrand, matches, BestLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobalExtend_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    66 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      67 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      68 |                 databaseID, databaseStrand, matches, BandedGlobalExtend());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   152 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  199 |                 TAlign ali(align);
      |                        ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   152 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  199 |                 TAlign ali(align);
      |                        ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Rna_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   152 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  199 |                 TAlign ali(align);
      |                        ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Rna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   152 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  199 |                 TAlign ali(align);
      |                        ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   152 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  199 |                 TAlign ali(align);
      |                        ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   152 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  199 |                 TAlign ali(align);
      |                        ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_smart_pointer.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   252 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   587 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  444 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:206:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   785 |         integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:77:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   252 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   587 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  444 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   785 |         integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Rna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Rna_>; TValueTarget = SimpleType<unsigned char, Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Rna_>; TValueTarget = SimpleType<unsigned char, Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Rna_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Rna_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Rna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Rna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Rna_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Rna_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Rna_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Rna_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   252 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   587 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  444 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Rna_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   785 |         integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Rna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Rna5_>; TValueTarget = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Rna5_>; TValueTarget = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Rna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Rna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Rna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Rna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Rna5_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Rna5_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Rna5_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Rna5_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   252 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   587 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  444 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Rna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   785 |         integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, AminoAcid_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, AminoAcid_>; TValueTarget = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, AminoAcid_>; TValueTarget = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, AminoAcid_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, AminoAcid_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::AminoAcid_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::AminoAcid_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, AminoAcid_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, AminoAcid_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   252 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   587 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  444 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   785 |         integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<char, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<char, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<char, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<char, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   252 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   587 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  444 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<char, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<char, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   785 |         integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   244 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   780 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  437 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   244 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   780 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  437 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   244 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   780 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  437 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   244 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   780 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  437 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   244 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   780 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  437 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<char, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<char, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   244 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<char, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   780 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  437 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   447 |         return host(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   698 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19:   required from ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<typename Infix<THost>::Type, TSpec2>&) [with TSource = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSpec2 = Tag<ArrayGaps_>; typename Infix<THost>::Type = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   154 |     integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16:   required from ‘void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TCoord = seqan::Pair<long unsigned int, long unsigned int, void>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   620 |         integrateAlign(align, infixAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   753 |                 _tracebackLeft(matrixLeft, (*endPair.i1).coord, infH, infV, seed, seedOld, endLeftH, endLeftV, align);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   447 |         return host(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   698 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19:   required from ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<typename Infix<THost>::Type, TSpec2>&) [with TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSpec2 = Tag<ArrayGaps_>; typename Infix<THost>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   154 |     integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16:   required from ‘void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TCoord = seqan::Pair<long unsigned int, long unsigned int, void>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   620 |         integrateAlign(align, infixAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   753 |                 _tracebackLeft(matrixLeft, (*endPair.i1).coord, infH, infV, seed, seedOld, endLeftH, endLeftV, align);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   447 |         return host(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   698 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Rna_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19:   required from ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<typename Infix<THost>::Type, TSpec2>&) [with TSource = String<SimpleType<unsigned char, Rna_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSpec2 = Tag<ArrayGaps_>; typename Infix<THost>::Type = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   154 |     integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16:   required from ‘void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TCoord = seqan::Pair<long unsigned int, long unsigned int, void>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   620 |         integrateAlign(align, infixAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   753 |                 _tracebackLeft(matrixLeft, (*endPair.i1).coord, infH, infV, seed, seedOld, endLeftH, endLeftV, align);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   447 |         return host(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   698 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Rna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19:   required from ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<typename Infix<THost>::Type, TSpec2>&) [with TSource = String<SimpleType<unsigned char, Rna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSpec2 = Tag<ArrayGaps_>; typename Infix<THost>::Type = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   154 |     integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16:   required from ‘void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TCoord = seqan::Pair<long unsigned int, long unsigned int, void>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   620 |         integrateAlign(align, infixAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   753 |                 _tracebackLeft(matrixLeft, (*endPair.i1).coord, infH, infV, seed, seedOld, endLeftH, endLeftV, align);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   447 |         return host(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   698 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19:   required from ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<typename Infix<THost>::Type, TSpec2>&) [with TSource = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSpec2 = Tag<ArrayGaps_>; typename Infix<THost>::Type = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   154 |     integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16:   required from ‘void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TCoord = seqan::Pair<long unsigned int, long unsigned int, void>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   620 |         integrateAlign(align, infixAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   753 |                 _tracebackLeft(matrixLeft, (*endPair.i1).coord, infH, infV, seed, seedOld, endLeftH, endLeftV, align);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   447 |         return host(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   698 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<char, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<String<char, Alloc<> >, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19:   required from ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<typename Infix<THost>::Type, TSpec2>&) [with TSource = String<char, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSpec2 = Tag<ArrayGaps_>; typename Infix<THost>::Type = Segment<String<char, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   154 |     integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16:   required from ‘void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TCoord = seqan::Pair<long unsigned int, long unsigned int, void>; TSequence = seqan::String<char, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TAlign = seqan::Align<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   620 |         integrateAlign(align, infixAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   753 |                 _tracebackLeft(matrixLeft, (*endPair.i1).coord, infH, infV, seed, seedOld, endLeftH, endLeftV, align);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<char, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TIterator>::Type = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   614 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TAlphabet>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<long unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   402 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TIterator>::Type = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   614 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TAlphabet>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<long unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   402 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TIterator>::Type = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   614 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TAlphabet>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<long unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   402 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TIterator>::Type = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   614 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TAlphabet>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<long unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   402 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TIterator>::Type = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   614 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TAlphabet>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<long unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   402 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TIterator>::Type = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   614 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<char, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<char, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<char, Alloc<> >, InfixSegment>; TString2 = Segment<String<char, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<char, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<char, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TAlphabet>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<long unsigned int>; TSequence = seqan::String<char, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   402 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1205 |     TConstSeqHIterator itH = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, upperDiagonal(band)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  619 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna_>*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1206 |     TConstSeqHIterator itHEnd = begin(seqH, Rooted()) + _min(seqHlength - 1, upperDiagonal(band) + seqVlength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1205 |     TConstSeqHIterator itH = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, upperDiagonal(band)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  619 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1206 |     TConstSeqHIterator itHEnd = begin(seqH, Rooted()) + _min(seqHlength - 1, upperDiagonal(band) + seqVlength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1205 |     TConstSeqHIterator itH = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, upperDiagonal(band)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  619 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna_>*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1206 |     TConstSeqHIterator itHEnd = begin(seqH, Rooted()) + _min(seqHlength - 1, upperDiagonal(band) + seqVlength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna5_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna5_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1205 |     TConstSeqHIterator itH = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, upperDiagonal(band)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  619 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna5_>*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1206 |     TConstSeqHIterator itHEnd = begin(seqH, Rooted()) + _min(seqHlength - 1, upperDiagonal(band) + seqVlength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, AminoAcid_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, AminoAcid_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1205 |     TConstSeqHIterator itH = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, upperDiagonal(band)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  619 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, AminoAcid_>*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1206 |     TConstSeqHIterator itHEnd = begin(seqH, Rooted()) + _min(seqHlength - 1, upperDiagonal(band) + seqVlength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1205 |     TConstSeqHIterator itH = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, upperDiagonal(band)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  619 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1206 |     TConstSeqHIterator itHEnd = begin(seqH, Rooted()) + _min(seqHlength - 1, upperDiagonal(band) + seqVlength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   462 |     TConstSeqVIterator seqVEnd = end(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   462 |     TConstSeqVIterator seqVEnd = end(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   462 |     TConstSeqVIterator seqVEnd = end(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   462 |     TConstSeqVIterator seqVEnd = end(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, AminoAcid_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, AminoAcid_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, AminoAcid_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, AminoAcid_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   462 |     TConstSeqVIterator seqVEnd = end(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<char, Alloc<> >, InfixSegment>*; TParam = Segment<String<char, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<char, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<char, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<char, Alloc<> >, InfixSegment>; TString2 = Segment<String<char, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<char, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<char, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   462 |     TConstSeqVIterator seqVEnd = end(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna5_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, AminoAcid_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, TraceBack_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, TraceBack_>; TValueTarget = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, TraceBack_>; TValueTarget = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, TraceBack_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, TraceBack_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::TraceBack_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::TraceBack_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Triple<long unsigned int, long unsigned int, int, void>; TSource = Triple<long unsigned int, long unsigned int, int, void>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:268:11:   required from ‘void seqan::move(TTarget&, TSource&) [with TTarget = Triple<long unsigned int, long unsigned int, int, void>; TSource = Triple<long unsigned int, long unsigned int, int, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   268 |     assign(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1056:13:   required from ‘void seqan::_arrayMoveForwardDefault(TSource1, TSource2, TTarget) [with TTarget = Triple<long unsigned int, long unsigned int, int, void>*; TSource1 = Triple<long unsigned int, long unsigned int, int, void>*; TSource2 = Triple<long unsigned int, long unsigned int, int, void>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1056 |         move(*target_begin, *source_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1600:29:   required from ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, False) [with TValue = Triple<long unsigned int, long unsigned int, int, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1600 |     _arrayMoveForwardDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = Triple<long unsigned int, long unsigned int, int, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1211:25:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = Triple<long unsigned int, long unsigned int, int, void>*; TSource1 = Triple<long unsigned int, long unsigned int, int, void>*; TSource2 = Triple<long unsigned int, long unsigned int, int, void>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1211 |         arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1295:22:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, long unsigned int, int, void>& seqan::Triple<long unsigned int, long unsigned int, int, void>::operator=(const seqan::Triple<long unsigned int, long unsigned int, int, void>&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because ‘seqan::Triple<long unsigned int, long unsigned int, int, void>’ has user-provided ‘seqan::Triple<T1, T2, T3, TSpec>::Triple(const seqan::Triple<T1, T2, T3, TSpec>&) [with T1 = long unsigned int; T2 = long unsigned int; T3 = int; TSpec = void]’
  162 |     inline Triple(Triple const & _p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<ScoreAndID<int, long unsigned int>, Alloc<> >; TValue = ScoreAndID<int, long unsigned int>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = ScoreAndID<int, long unsigned int>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = ScoreAndID<int, long unsigned int>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = ScoreAndID<int, long unsigned int>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ScoreAndID<int, long unsigned int>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ScoreAndID<int, long unsigned int>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ScoreAndID<int, long unsigned int>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::ScoreAndID<int, long unsigned int>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = ScoreAndID<int, long unsigned int>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = ScoreAndID<int, long unsigned int>; TLess = std::less<ScoreAndID<int, long unsigned int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = ScoreAndID<int, long unsigned int>; TLess = std::less<ScoreAndID<int, long unsigned int> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
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/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/stellar.dir/stellar.cpp.o -o ../../../bin/stellar  -lrt 
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cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake "--color="
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make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 30%] Building CXX object core/apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o -MF CMakeFiles/tree_recon.dir/tree_recon.cpp.o.d -o CMakeFiles/tree_recon.dir/tree_recon.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:37,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:19:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:18:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:39:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  343 |         public ::std::binary_function<TVertexDescriptor, TCargo, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function ‘void seqan::njTree(const String<TValue, TSpec>&, Graph<Tree<TCargo, TSpec> >&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  148 |     for (unsigned i = 0; i < length(mat); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  152 |         String<__int64> av;    // Average branch length to a combined node
      |         ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, StringSet<TSequence, TSpec>&, TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  416 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  420 |         TString seq;
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  534 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  538 |         String<TValue> mat;
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  880 |         TName seq1;
      |         ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, Graph<Tree<TCargo, TSpec> >&, TNames&, NewickFormat)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  985 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  988 |         TVertexDescriptor lastVertex = nilVertex;
      |         ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp: In function ‘int main(int, const char**)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:139:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  139 |     if (res != seqan::ArgumentParser::PARSE_OK)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:143:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  143 |         typedef double TDistanceValue;
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:165:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  165 |     else
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:169:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  169 |         String<TName> names;
      |         ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 32%] Linking CXX executable ../../../bin/tree_recon
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree_recon.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/tree_recon.dir/tree_recon.cpp.o -o ../../../bin/tree_recon  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
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make  -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/CMakeFiles/seqan_extras.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
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make  -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake "--color="
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[ 32%] Building CXX object extras/apps/alf/CMakeFiles/alf.dir/alf.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/alf/CMakeFiles/alf.dir/alf.cpp.o -MF CMakeFiles/alf.dir/alf.cpp.o.d -o CMakeFiles/alf.dir/alf.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:46:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:42:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1980:11:   required from ‘seqan::String<TValue, TSpec>& seqan::operator+=(String<TValue, TSpec>&, const TRight&) [with TLeftValue = SimpleType<unsigned char, Dna5_>; TLeftSpec = Alloc<>; TRight = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1980 |     append(left, right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:1292:66:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1292 |                 sequenceCut += infix(sequence, position(itSeq), i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                                                                  ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSize = unsigned int; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_base.h:1051:9:   required from ‘void seqan::unhash(TString&, THash, unsigned int) [with TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; THash = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1051 |                 resize(result, q);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:60:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:    60 |         unhash(w, i, k);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Alloc<> >; TValue = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TTargetSpec = Alloc<>; TValue = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TString2 = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:181:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   181 |             appendValue(mySequenceSet, sequenceTmp, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexQGram<UngappedShape<0> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexQGram<UngappedShape<0> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexQGram<UngappedShape<0> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics/statistics_markov_model.h:303:15:   required from ‘void seqan::MarkovModel<TAlphabet, TFloat, TSpec>::build(const seqan::StringSet<seqan::String<TString> >&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TFloat = double; TSpec = seqan::Tag<seqan::Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   303 |                 indexRequire(ind, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics/statistics_markov_model.h:866:10:   required from ‘void seqan::buildMarkovModel(MarkovModel<TAlphabet, TFloat, TSpec>&, StringSet<String<TString> >&) [with TAlphabet = SimpleType<unsigned char, Dna_>; TFloat = double; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   866 |         mm.build(stringSet);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:395:21:   required from ‘void seqan::countKmers(String<unsigned int, Alloc<> >&, MarkovModel<TAlphabetBG, TValue>&, const TString&, unsigned int) [with TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TAlphabetBG = SimpleType<unsigned char, Dna_>; TValue = double]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   395 |     buildMarkovModel(backgroundModel, seqSetMM);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_d2z.h:135:23:   required from ‘void seqan::_alignmentFreeComparison(Matrix<TFloat, 2>&, const TStringSet&, const AFScore<const Tag<D2z_> >&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = double]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   135 |             countKmers(*itKmerCounts, *itMM, *itSeqSet, score.kmerSize);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29:   required from ‘void seqan::alignmentFreeComparison(Matrix<TFloat, 2>&, const TStringSet&, const TComparisonMethod&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = double; TComparisonMethod = AFScore<const Tag<D2z_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   151 |     _alignmentFreeComparison(scoreMatrix, sequenceSet, comparisonMethod);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:195:32:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   195 |         alignmentFreeComparison(myMatrix, mySequenceSet, myScoreD2z);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexQGram<UngappedShape<0> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexQGram<UngappedShape<0> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexQGram<UngappedShape<0> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics/statistics_markov_model.h:303:15:   required from ‘void seqan::MarkovModel<TAlphabet, TFloat, TSpec>::build(const seqan::StringSet<seqan::String<TString> >&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TFloat = double; TSpec = seqan::Tag<seqan::Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   303 |                 indexRequire(ind, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics/statistics_markov_model.h:866:10:   required from ‘void seqan::buildMarkovModel(MarkovModel<TAlphabet, TFloat, TSpec>&, StringSet<String<TString> >&) [with TAlphabet = SimpleType<unsigned char, Dna_>; TFloat = double; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   866 |         mm.build(stringSet);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:395:21:   required from ‘void seqan::countKmers(String<unsigned int, Alloc<> >&, MarkovModel<TAlphabetBG, TValue>&, const TString&, unsigned int) [with TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TAlphabetBG = SimpleType<unsigned char, Dna_>; TValue = double]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   395 |     buildMarkovModel(backgroundModel, seqSetMM);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_d2z.h:135:23:   required from ‘void seqan::_alignmentFreeComparison(Matrix<TFloat, 2>&, const TStringSet&, const AFScore<const Tag<D2z_> >&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = double]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   135 |             countKmers(*itKmerCounts, *itMM, *itSeqSet, score.kmerSize);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29:   required from ‘void seqan::alignmentFreeComparison(Matrix<TFloat, 2>&, const TStringSet&, const TComparisonMethod&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = double; TComparisonMethod = AFScore<const Tag<D2z_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   151 |     _alignmentFreeComparison(scoreMatrix, sequenceSet, comparisonMethod);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:195:32:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   195 |         alignmentFreeComparison(myMatrix, mySequenceSet, myScoreD2z);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1980:11:   required from ‘seqan::String<TValue, TSpec>& seqan::operator+=(String<TValue, TSpec>&, const TRight&) [with TLeftValue = SimpleType<unsigned char, Dna5_>; TLeftSpec = Alloc<>; TRight = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1980 |     append(left, right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:1292:66:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1292 |                 sequenceCut += infix(sequence, position(itSeq), i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                  ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSource = String<SimpleType<unsigned char, Dna_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:850:15:   required from ‘void seqan::calculateCovariance(TValue&, const String<TAlphabet, TSpec>&, const String<TAlphabet, TSpec>&, MarkovModel<TAlphabet, TValue>&, int) [with TValue = double; TSpec = Alloc<>; TAlphabet = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   850 |         append(clump, word2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:549:48:   required from ‘void seqan::_standardiseCounts(TString&, const String<unsigned int, Alloc<> >&, const StringSet<String<unsigned int, Alloc<> > >&, const TSequence&, const AFScore<const Tag<N2_> >&) [with TString = String<double>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   549 |                             calculateCovariance(value(covarianceMatrix, wordColHash, wordRowHash), wMM1, wMM2, backgroundModel, (len1 + score.kmerSize - 1));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:179:27:   required from ‘void seqan::_alignmentFreeComparison(Matrix<TValue, 2>&, const TStringSet&, const AFScore<const Tag<N2_> >&) [with TValue = double; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   179 |         _standardiseCounts(*itStandardisedKmerCounts, revComIndex, kmerNeighbourhood, *itSeqSet, score);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29:   required from ‘void seqan::alignmentFreeComparison(Matrix<TFloat, 2>&, const TStringSet&, const TComparisonMethod&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = double; TComparisonMethod = AFScore<const Tag<N2_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   151 |     _alignmentFreeComparison(scoreMatrix, sequenceSet, comparisonMethod);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:205:32:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   205 |         alignmentFreeComparison(myMatrix, mySequenceSet, myScoreN2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna_>*; TSource1 = SimpleType<unsigned char, Dna_>*; TSource2 = SimpleType<unsigned char, Dna_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSource = String<SimpleType<unsigned char, Dna_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:850:15:   required from ‘void seqan::calculateCovariance(TValue&, const String<TAlphabet, TSpec>&, const String<TAlphabet, TSpec>&, MarkovModel<TAlphabet, TValue>&, int) [with TValue = double; TSpec = Alloc<>; TAlphabet = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   850 |         append(clump, word2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:549:48:   required from ‘void seqan::_standardiseCounts(TString&, const String<unsigned int, Alloc<> >&, const StringSet<String<unsigned int, Alloc<> > >&, const TSequence&, const AFScore<const Tag<N2_> >&) [with TString = String<double>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   549 |                             calculateCovariance(value(covarianceMatrix, wordColHash, wordRowHash), wMM1, wMM2, backgroundModel, (len1 + score.kmerSize - 1));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:179:27:   required from ‘void seqan::_alignmentFreeComparison(Matrix<TValue, 2>&, const TStringSet&, const AFScore<const Tag<N2_> >&) [with TValue = double; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   179 |         _standardiseCounts(*itStandardisedKmerCounts, revComIndex, kmerNeighbourhood, *itSeqSet, score);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29:   required from ‘void seqan::alignmentFreeComparison(Matrix<TFloat, 2>&, const TStringSet&, const TComparisonMethod&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = double; TComparisonMethod = AFScore<const Tag<N2_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   151 |     _alignmentFreeComparison(scoreMatrix, sequenceSet, comparisonMethod);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:205:32:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   205 |         alignmentFreeComparison(myMatrix, mySequenceSet, myScoreN2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 32%] Linking CXX executable ../../../bin/alf
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf && /usr/bin/cmake -E cmake_link_script CMakeFiles/alf.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/alf.dir/alf.cpp.o -o ../../../bin/alf  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Built target alf
make  -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Building CXX object extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o -MF CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o.d -o CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp:23:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/parse_alignment.h:27,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.h:34,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp:25:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 32%] Linking CXX executable ../../../bin/breakpoint_calculator
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator && /usr/bin/cmake -E cmake_link_script CMakeFiles/breakpoint_calculator.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o -o ../../../bin/breakpoint_calculator  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Built target breakpoint_calculator
make  -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Building CXX object extras/apps/bs_tools/CMakeFiles/bisar.dir/bisar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/bs_tools/CMakeFiles/bisar.dir/bisar.cpp.o -MF CMakeFiles/bisar.dir/bisar.cpp.o.d -o CMakeFiles/bisar.dir/bisar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:39:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:46:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar_score.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar_score.h:28:57: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   28 | struct FunctorDna5OrdValueComplement<int> : public std::unary_function<int,int>
      |                                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   297 |     return value(me);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:157:26:   required from ‘int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore<seqan::MyFragmentStoreConfig>; TId = unsigned int; TBsScoreCTLeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreCTRight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGALeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGARight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TOptions = AppOptions]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   157 |                 else if (*itR == *itC || (*itR == 'T' && *itC == 'C')) ++matches;
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |                          ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:  1289 |         reAlign4(readGaps, contigGaps, store, id, scoringSchemeCTLeft, scoringSchemeCTRight, scoringSchemeGALeft, scoringSchemeGARight, options);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/usr/include/c++/14/bits/stl_function.h:117:12: note:   294 |         postProcessMain(options, BsNonSimple());
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:157:26:   required from ‘int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore<seqan::MyFragmentStoreConfig>; TId = unsigned int; TBsScoreCTLeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreCTRight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGALeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGARight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TOptions = AppOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   157 |                 else if (*itR == *itC || (*itR == 'T' && *itC == 'C')) ++matches;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                          ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1289 |         reAlign4(readGaps, contigGaps, store, id, scoringSchemeCTLeft, scoringSchemeCTRight, scoringSchemeGALeft, scoringSchemeGARight, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37:   required from ‘TStream& seqan::operator<<(TStream&, const Gaps<TSource, TSpec>&) [with TStream = std::basic_ostream<char>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1180 |             stream << convert<char>(*it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:127:19:   required from ‘int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore<seqan::MyFragmentStoreConfig>; TId = unsigned int; TBsScoreCTLeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreCTRight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGALeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGARight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TOptions = AppOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   127 |         std::cout << contigGaps << std::endl;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1289 |         reAlign4(readGaps, contigGaps, store, id, scoringSchemeCTLeft, scoringSchemeCTRight, scoringSchemeGALeft, scoringSchemeGARight, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37:   required from ‘TStream& seqan::operator<<(TStream&, const Gaps<TSource, TSpec>&) [with TStream = std::basic_ostream<char>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1180 |             stream << convert<char>(*it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:127:19:   required from ‘int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore<seqan::MyFragmentStoreConfig>; TId = unsigned int; TBsScoreCTLeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreCTRight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGALeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGARight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TOptions = AppOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   127 |         std::cout << contigGaps << std::endl;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1289 |         reAlign4(readGaps, contigGaps, store, id, scoringSchemeCTLeft, scoringSchemeCTRight, scoringSchemeGALeft, scoringSchemeGARight, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:157:26:   required from ‘int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore<seqan::MyFragmentStoreConfig>; TId = unsigned int; TBsScoreCTLeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreCTRight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGALeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGARight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TOptions = AppOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   157 |                 else if (*itR == *itC || (*itR == 'T' && *itC == 'C')) ++matches;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                          ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1289 |         reAlign4(readGaps, contigGaps, store, id, scoringSchemeCTLeft, scoringSchemeCTRight, scoringSchemeGALeft, scoringSchemeGARight, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37:   required from ‘TStream& seqan::operator<<(TStream&, const Gaps<TSource, TSpec>&) [with TStream = std::basic_ostream<char>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1180 |             stream << convert<char>(*it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:127:19:   required from ‘int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore<seqan::MyFragmentStoreConfig>; TId = unsigned int; TBsScoreCTLeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreCTRight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGALeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGARight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TOptions = AppOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   127 |         std::cout << contigGaps << std::endl;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1289 |         reAlign4(readGaps, contigGaps, store, id, scoringSchemeCTLeft, scoringSchemeCTRight, scoringSchemeGALeft, scoringSchemeGARight, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1256:18:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1256 |         TReadSeq readSeq =  store.readSeqStore[readId];
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:242:20:   required from ‘int writeBsAlignment(TStream&, const seqan::BamIOContext<TNameStore, TNameStoreCache>&, TFragmentStore&, TContigGaps&, TId&, TScore&, seqan::BamAlignmentRecord&, TOptions&) [with TStream = std::basic_fstream<char>; TNameStore = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TNameStoreCache = seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore<seqan::MyFragmentStoreConfig>; TContigGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TId = unsigned int; TScore = double; TOptions = AppOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   242 |         Dna5String tmpReadSeq = readSeq;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1194:41:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1194 |                         writeBsAlignment(outStream, bamIOContext, store, setContigGaps[verifiedMates.alignedReadIdL], verifiedMates.alignedReadIdL, verifiedMates.mapqL, verifiedMates.recordL, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type seqan::appendMatePair(FragmentStore<TSpec, TConfig>&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; typename Size<typename FragmentStore<TSpec, TConfig>::TMatePairStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TMatePairStore = String<MatePairStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1657 |         appendValue(me.readSeqStore, read1, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar_base.h:102:17:   required from ‘bool loadReadsCroppedId(seqan::FragmentStore<TSpec, TConfig>&, TFileName&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig<seqan::MyFragmentStoreConfig>; TFileName = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   102 |                 appendMatePair(store, seq[0], seq[1], _id[0], _id[1]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1117:27:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1117 |         loadReadsCroppedId(store, options.readFileName, options.readFileName2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type seqan::appendMatePair(FragmentStore<TSpec, TConfig>&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; typename Size<typename FragmentStore<TSpec, TConfig>::TMatePairStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TMatePairStore = String<MatePairStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1657 |         appendValue(me.readSeqStore, read1, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar_base.h:102:17:   required from ‘bool loadReadsCroppedId(seqan::FragmentStore<TSpec, TConfig>&, TFileName&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig<seqan::MyFragmentStoreConfig>; TFileName = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   102 |                 appendMatePair(store, seq[0], seq[1], _id[0], _id[1]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1117:27:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1117 |         loadReadsCroppedId(store, options.readFileName, options.readFileName2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 33%] Linking CXX executable ../../../bin/bisar
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bisar.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/bisar.dir/bisar.cpp.o -o ../../../bin/bisar  -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 33%] Built target bisar
make  -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 35%] Building CXX object extras/apps/bs_tools/CMakeFiles/casbar.dir/casbar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/bs_tools/CMakeFiles/casbar.dir/casbar.cpp.o -MF CMakeFiles/casbar.dir/casbar.cpp.o.d -o CMakeFiles/casbar.dir/casbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:42:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  343 |         public ::std::binary_function<TVertexDescriptor, TCargo, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function ‘void seqan::njTree(const String<TValue, TSpec>&, Graph<Tree<TCargo, TSpec> >&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  148 |     for (unsigned i = 0; i < length(mat); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  152 |         String<__int64> av;    // Average branch length to a combined node
      |         ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, StringSet<TSequence, TSpec>&, TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  416 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  420 |         TString seq;
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  534 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  538 |         String<TValue> mat;
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  880 |         TName seq1;
      |         ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, Graph<Tree<TCargo, TSpec> >&, TNames&, NewickFormat)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  985 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  988 |         TVertexDescriptor lastVertex = nilVertex;
      |         ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function ‘void seqan::getGappedConsensus(FragmentStore<TSpec, TConfig>&, TGappedConsensus&, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  387 |                 for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i)
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 |                         diff = (itGaps->gapPos - itGaps->seqPos);
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   91 |         public ::std::unary_function<Pair<TSize, TSize>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  102 |         public ::std::unary_function<Pair<TSize, Triple<TSize, TSize, TSize> >, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/../../extras/include/seqan/vcf_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:64:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function ‘int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  190 |     else
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  192 |         streamWriteChar(stream, '\t');
      |         ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:6,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:72:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:42:57: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   42 | struct FunctorDna5OrdValueComplement<int> : public std::unary_function<int,int>
      |                                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:17:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   17 |         public ::std::binary_function < typename Value<TMatches>::Type, typename Value<TMatchQualities>::Type, bool >
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:66:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   66 |     struct LessPosLen : public ::std::binary_function < TPosLen, TPosLen, bool >
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:81:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   81 |         public ::std::binary_function < typename Value<TMatches>::Type, typename Value<TMatchQualities>::Type, bool >
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:129:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  129 |     struct LessId : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:142:37: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  142 |     struct LessGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:165:40: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  165 |     struct LessGPosEnd : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                        ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:184:42: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  184 |     struct LessGPosEndOa : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                          ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:206:36: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  206 |     struct HigherQ : public ::std::binary_function < TQual, TQual, bool >
      |                                    ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, Tag<TExpand>) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1189 |     return begin(me, tag_) + pos;
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1169 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1387:36:   required from ‘void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1387 |         TContigGapIter refIt = iter(referenceGaps,candidateViewPos-refStart);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:765:36:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   765 |                 doSnpAndMethCalling(fragmentStoreTmp,  startCoord, currentWindowBegin, currentWindowEnd, false, vcfStream, bedStream, methOptions, options);    //bs
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                 ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1286 |     int result = detectSNPs(options, methOptions);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37:   required from ‘TStream& seqan::operator<<(TStream&, const Gaps<TSource, TSpec>&) [with TStream = std::basic_ostream<char>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1180 |             stream << convert<char>(*it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1527:47:   required from ‘void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1527 |                 std::cout << "  contigGaps: " << contigGaps << std::endl;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:765:36:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   765 |                 doSnpAndMethCalling(fragmentStoreTmp,  startCoord, currentWindowBegin, currentWindowEnd, false, vcfStream, bedStream, methOptions, options);    //bs
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37:   required from ‘TStream& seqan::operator<<(TStream&, const Gaps<TSource, TSpec>&) [with TStream = std::basic_ostream<char>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1180 |             stream << convert<char>(*it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1527:47:   required from ‘void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1527 |                 std::cout << "  contigGaps: " << contigGaps << std::endl;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:765:36:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   765 |                 doSnpAndMethCalling(fragmentStoreTmp,  startCoord, currentWindowBegin, currentWindowEnd, false, vcfStream, bedStream, methOptions, options);    //bs
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37:   required from ‘TStream& seqan::operator<<(TStream&, const Gaps<TSource, TSpec>&) [with TStream = std::basic_ostream<char>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1180 |             stream << convert<char>(*it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1527:47:   required from ‘void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1527 |                 std::cout << "  contigGaps: " << contigGaps << std::endl;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:765:36:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   765 |                 doSnpAndMethCalling(fragmentStoreTmp,  startCoord, currentWindowBegin, currentWindowEnd, false, vcfStream, bedStream, methOptions, options);    //bs
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1157:36:   required from ‘void seqan::write(TFile&, const Gaps<TSource, TSpec>&, const TIDString&, Raw) [with TFile = std::basic_ostream<char>; TSource = String<char, Alloc<> >; TIDString = char [1]; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >; Raw = Tag<TagRaw_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1157 |                         streamPut(target, convert<char>(*begin_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2110:7:   required from ‘void seqan::_printRead(TStream&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream<char>; TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2110 |         write(stream, readGaps, "", format);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream<char>; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1195:31:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1195 |                 printAlignment(std::cout, Raw(), layout, fragStoreGroup, 0, (TContigPos)(maxPos-100), (TContigPos)maxPos, 0, 150);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1157:36:   required from ‘void seqan::write(TFile&, const Gaps<TSource, TSpec>&, const TIDString&, Raw) [with TFile = std::basic_ostream<char>; TSource = String<char, Alloc<> >; TIDString = char [1]; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >; Raw = Tag<TagRaw_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1157 |                         streamPut(target, convert<char>(*begin_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2110:7:   required from ‘void seqan::_printRead(TStream&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream<char>; TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  2110 |         write(stream, readGaps, "", format);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream<char>; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1195:31:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1195 |                 printAlignment(std::cout, Raw(), layout, fragStoreGroup, 0, (TContigPos)(maxPos-100), (TContigPos)maxPos, 0, 150);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:343:54:   required from ‘void seqan::_printRead(SVGFile&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   343 |         TContigIterator cit = begin(contigGaps, Standard()) + (_min(alignedRead.beginPos, alignedRead.endPos) + beginPosition(readGaps));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27:   required from ‘void reAlign(seqan::FragmentStore<TSpec, TConfig>&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig<seqan::SnpStoreSpec_>; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag<seqan::BsSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   633 |             printAlignment(svg, Raw(), layout, fragStore, 0, (TContigPos)0, (TContigPos)200, 0, 300);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12:   required from ‘void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   245 |     reAlign(fragmentStore, 0, bandWidth, true, methOptions, BsSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1231 |                 doRealigning(fragStoreGroup, groupWindowBegin, groupWindowBegin, methOptions, options);   // TODO: do only for reads spanning potential indel position
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1157:36:   required from ‘void seqan::write(TFile&, const Gaps<TSource, TSpec>&, const TIDString&, Raw) [with TFile = std::basic_ostream<char>; TSource = String<char, Alloc<> >; TIDString = char [1]; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >; Raw = Tag<TagRaw_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1157 |                         streamPut(target, convert<char>(*begin_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2110:7:   required from ‘void seqan::_printRead(TStream&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream<char>; TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2110 |         write(stream, readGaps, "", format);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream<char>; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1195:31:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1195 |                 printAlignment(std::cout, Raw(), layout, fragStoreGroup, 0, (TContigPos)(maxPos-100), (TContigPos)maxPos, 0, 150);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:96:   required from ‘void seqan::_printRead(SVGFile&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   352 |                 if (lastWasGap != inGap || inGap != static_cast<int>(isGap(cit)) || (!inGap && convert<Dna5>(*cit) != convert<Dna5>(*it)))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                                                                              ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27:   required from ‘void reAlign(seqan::FragmentStore<TSpec, TConfig>&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig<seqan::SnpStoreSpec_>; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag<seqan::BsSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   633 |             printAlignment(svg, Raw(), layout, fragStore, 0, (TContigPos)0, (TContigPos)200, 0, 300);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12:   required from ‘void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   245 |     reAlign(fragmentStore, 0, bandWidth, true, methOptions, BsSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1231 |                 doRealigning(fragStoreGroup, groupWindowBegin, groupWindowBegin, methOptions, options);   // TODO: do only for reads spanning potential indel position
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:96:   required from ‘void seqan::_printRead(SVGFile&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   352 |                 if (lastWasGap != inGap || inGap != static_cast<int>(isGap(cit)) || (!inGap && convert<Dna5>(*cit) != convert<Dna5>(*it)))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                                                                                                              ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27:   required from ‘void reAlign(seqan::FragmentStore<TSpec, TConfig>&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig<seqan::SnpStoreSpec_>; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag<seqan::BsSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   633 |             printAlignment(svg, Raw(), layout, fragStore, 0, (TContigPos)0, (TContigPos)200, 0, 300);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12:   required from ‘void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   245 |     reAlign(fragmentStore, 0, bandWidth, true, methOptions, BsSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1231 |                 doRealigning(fragStoreGroup, groupWindowBegin, groupWindowBegin, methOptions, options);   // TODO: do only for reads spanning potential indel position
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:119:   required from ‘void seqan::_printRead(SVGFile&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   352 |                 if (lastWasGap != inGap || inGap != static_cast<int>(isGap(cit)) || (!inGap && convert<Dna5>(*cit) != convert<Dna5>(*it)))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                                                                                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27:   required from ‘void reAlign(seqan::FragmentStore<TSpec, TConfig>&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig<seqan::SnpStoreSpec_>; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag<seqan::BsSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   633 |             printAlignment(svg, Raw(), layout, fragStore, 0, (TContigPos)0, (TContigPos)200, 0, 300);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12:   required from ‘void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   245 |     reAlign(fragmentStore, 0, bandWidth, true, methOptions, BsSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1231 |                 doRealigning(fragStoreGroup, groupWindowBegin, groupWindowBegin, methOptions, options);   // TODO: do only for reads spanning potential indel position
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:119:   required from ‘void seqan::_printRead(SVGFile&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   352 |                 if (lastWasGap != inGap || inGap != static_cast<int>(isGap(cit)) || (!inGap && convert<Dna5>(*cit) != convert<Dna5>(*it)))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                                                                                                                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27:   required from ‘void reAlign(seqan::FragmentStore<TSpec, TConfig>&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig<seqan::SnpStoreSpec_>; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag<seqan::BsSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   633 |             printAlignment(svg, Raw(), layout, fragStore, 0, (TContigPos)0, (TContigPos)200, 0, 300);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12:   required from ‘void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   245 |     reAlign(fragmentStore, 0, bandWidth, true, methOptions, BsSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1231 |                 doRealigning(fragStoreGroup, groupWindowBegin, groupWindowBegin, methOptions, options);   // TODO: do only for reads spanning potential indel position
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:680:15:   required from ‘int readMatchesFromSamBam(TSetContigAnchorGaps&, TReader&, seqan::BamIOContext<TNameStore>&, seqan::BamAlignmentRecord&, TFragmentStore&, TFragmentStore&, TContigId, TContigPos, TContigPos, TOptions&) [with TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >; TNameStore = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigId = int; TContigPos = long int; TOptions = SNPCallingOptions; typename seqan::Value<TMatrix>::Type = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   680 |         TRead curr_read = record.seq;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |               ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:697:47:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   697 |             int result = readMatchesFromSamBam(setContigAnchorGaps, *recordReaders[j], contexts[j], records[j], fragmentStoreTmp, fragmentStore1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                          ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     698 |                                                currContigId, currentWindowBegin, currentWindowEnd, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:96:   required from ‘void seqan::_printRead(SVGFile&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   352 |                 if (lastWasGap != inGap || inGap != static_cast<int>(isGap(cit)) || (!inGap && convert<Dna5>(*cit) != convert<Dna5>(*it)))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                                                                              ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27:   required from ‘void reAlign(seqan::FragmentStore<TSpec, TConfig>&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig<seqan::SnpStoreSpec_>; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag<seqan::BsSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   633 |             printAlignment(svg, Raw(), layout, fragStore, 0, (TContigPos)0, (TContigPos)200, 0, 300);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12:   required from ‘void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   245 |     reAlign(fragmentStore, 0, bandWidth, true, methOptions, BsSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1231 |                 doRealigning(fragStoreGroup, groupWindowBegin, groupWindowBegin, methOptions, options);   // TODO: do only for reads spanning potential indel position
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:119:   required from ‘void seqan::_printRead(SVGFile&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<long int, GapAnchor<long int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   352 |                 if (lastWasGap != inGap || inGap != static_cast<int>(isGap(cit)) || (!inGap && convert<Dna5>(*cit) != convert<Dna5>(*it)))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                                                                                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = long int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27:   required from ‘void reAlign(seqan::FragmentStore<TSpec, TConfig>&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig<seqan::SnpStoreSpec_>; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag<seqan::BsSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   633 |             printAlignment(svg, Raw(), layout, fragStore, 0, (TContigPos)0, (TContigPos)200, 0, 300);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12:   required from ‘void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   245 |     reAlign(fragmentStore, 0, bandWidth, true, methOptions, BsSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = long int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1231 |                 doRealigning(fragStoreGroup, groupWindowBegin, groupWindowBegin, methOptions, options);   // TODO: do only for reads spanning potential indel position
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:56,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function ‘unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String<CigarElement<> >; TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
  534 |                 insertGaps(it, cigar[i].count);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here
  535 |             case 'I':
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function ‘unsigned int seqan::cigarToGapAnchorContig(const TCigarString&, TGaps&) [with TCigarString = String<CigarElement<> >; TGaps = Gaps<Nothing, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:564:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
  564 |                 insertGaps(it, cigar[i].count);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:565:13: note: here
  565 |             case 'D':
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function ‘void seqan::assignTargetFreqs(Score<TValue, BsTagList<TBsProfileScore, TModel, TCellDescriptor> >&, const TString&, TMethOptions&, BsTop&) [with TValue = double; TString = String<ProfileChar<SimpleType<unsigned char, DnaMR_>, double> >; TBsProfileScore = const Tag<BsProfileScoreCT_>; TModel = Tag<BsSimple_>; TCellDescriptor = Tag<InnerCell_>; TMethOptions = MethCallingOptions]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:190:38: warning: this statement may fall through [-Wimplicit-fallthrough=]
  190 |                 me.targetFreqs[i][3] += ((1.0-estMethLevel)/sum)/4.0;   // T
      |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:191:13: note: here
  191 |             case -1: // Ref gap
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function ‘void seqan::assignTargetFreqs(Score<TValue, BsTagList<TBsProfileScore, TModel, TCellDescriptor> >&, const TString&, TMethOptions&, BsTop&) [with TValue = double; TString = String<ProfileChar<SimpleType<unsigned char, DnaMR_>, double> >; TBsProfileScore = const Tag<BsProfileScoreCTRight_>; TModel = Tag<BsSimple_>; TCellDescriptor = Tag<InnerCell_>; TMethOptions = MethCallingOptions]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:190:38: warning: this statement may fall through [-Wimplicit-fallthrough=]
  190 |                 me.targetFreqs[i][3] += ((1.0-estMethLevel)/sum)/4.0;   // T
      |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:191:13: note: here
  191 |             case -1: // Ref gap
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function ‘void seqan::assignTargetFreqs(Score<TValue, BsTagList<TBsProfileScore, TModel, TCellDescriptor> >&, const TString&, TMethOptions&, BsBottom&) [with TValue = double; TString = String<ProfileChar<SimpleType<unsigned char, DnaMR_>, double> >; TBsProfileScore = const Tag<BsProfileScoreGA_>; TModel = Tag<BsSimple_>; TCellDescriptor = Tag<InnerCell_>; TMethOptions = MethCallingOptions]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:265:38: warning: this statement may fall through [-Wimplicit-fallthrough=]
  265 |                 me.targetFreqs[i][3] += (1.0/sum)/4.0;                  // T
      |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:266:13: note: here
  266 |             case -1: // Ref gap
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function ‘void seqan::assignTargetFreqs(Score<TValue, BsTagList<TBsProfileScore, TModel, TCellDescriptor> >&, const TString&, TMethOptions&, BsBottom&) [with TValue = double; TString = String<ProfileChar<SimpleType<unsigned char, DnaMR_>, double> >; TBsProfileScore = const Tag<BsProfileScoreGARight_>; TModel = Tag<BsSimple_>; TCellDescriptor = Tag<InnerCell_>; TMethOptions = MethCallingOptions]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:265:38: warning: this statement may fall through [-Wimplicit-fallthrough=]
  265 |                 me.targetFreqs[i][3] += (1.0/sum)/4.0;                  // T
      |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:266:13: note: here
  266 |             case -1: // Ref gap
      |             ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<long double>; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<long double>; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<long double>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<long double>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String<seqan::String<seqan::String<long double> > >; TStrand = char]’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:351:22:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String<seqan::String<seqan::String<long double> > >; TStrand = char]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<long double>; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<long double>; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<long double>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<long double>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String<seqan::String<seqan::String<long double> > >; TStrand = char]’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:352:22:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String<seqan::String<seqan::String<long double> > >; TStrand = char]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<long double>; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<long double>; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<long double>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<long double>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String<seqan::String<seqan::String<long double> > >; TStrand = char]’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:353:22:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String<seqan::String<seqan::String<long double> > >; TStrand = char]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<long double>; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<long double>; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<long double>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<long double>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String<seqan::String<seqan::String<long double> > >; TStrand = char]’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:354:22:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String<seqan::String<seqan::String<long double> > >; TStrand = char]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<long double>; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<long double>; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<long double>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<long double>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String<seqan::String<seqan::String<long double> > >; TStrand = char]’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:361:22:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String<seqan::String<seqan::String<long double> > >; TStrand = char]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<long double>; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<long double>; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<long double>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<long double>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String<seqan::String<seqan::String<long double> > >; TStrand = char]’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:362:22:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String<seqan::String<seqan::String<long double> > >; TStrand = char]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<long double>; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<long double>; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<long double>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<long double>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String<seqan::String<seqan::String<long double> > >; TStrand = char]’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:363:22:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String<seqan::String<seqan::String<long double> > >; TStrand = char]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<long double>; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<long double>; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<long double>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<long double>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String<seqan::String<seqan::String<long double> > >; TStrand = char]’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:364:22:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String<seqan::String<seqan::String<long double> > >; TStrand = char]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 35%] Linking CXX executable ../../../bin/casbar
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/casbar.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/casbar.dir/casbar.cpp.o -o ../../../bin/casbar  -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 35%] Built target casbar
make  -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 35%] Building CXX object extras/apps/bs_tools/CMakeFiles/four2three.dir/four2three.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/bs_tools/CMakeFiles/four2three.dir/four2three.cpp.o -MF CMakeFiles/four2three.dir/four2three.cpp.o.d -o CMakeFiles/four2three.dir/four2three.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:37:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:35:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:40:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.h:14:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   14 | struct ConvertCT : public ::std::unary_function<char,char>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.h:23:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   23 | struct ConvertGA : public ::std::unary_function<char,char>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:36:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 37%] Linking CXX executable ../../../bin/four2three
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/four2three.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/four2three.dir/four2three.cpp.o -o ../../../bin/four2three  -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 37%] Built target four2three
make  -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 37%] Building CXX object extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -MF CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o.d -o CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:40:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:38:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1925 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, const TValue2&, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1964 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length, val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = unsigned int; TValue = SimpleType<unsigned char, Dna5_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11:   required from ‘int seqan::readRegion(String<TValue, TSpec>&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   426 |     resize(str, toRead, TValue());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22:   required from ‘int seqan::readSequence(String<TValue, TSpec>&, const FaiIndex&, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   505 |     return readRegion(str, index, refId, 0, sequenceLength(index, refId));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:219:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   219 |         if (readSequence(contigSeq, faiIndex, i) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 38%] Linking CXX executable ../../../bin/fx_bam_coverage
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_bam_coverage.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -o ../../../bin/fx_bam_coverage  -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
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make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake "--color="
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[ 38%] Building CXX object extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -MF CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o.d -o CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:37:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_tree.h:65,
                 from /usr/include/c++/14/map:62,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:35:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:39:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from ‘int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader<TFile, DoublePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFile = String<char, MMap<> >; TSpec = Tag<StringReader_>; TTag = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   262 |     reserve(seq, seqLength, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:580:37:   required from ‘int seqan::readRecord(TIdString&, TSeqString&, TQualString&, RecordReader<TFile, TSpec>&, const Fasta&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TQualString = String<char, Alloc<> >; TFile = String<char, MMap<> >; TPass = DoublePass<Tag<StringReader_> >; Fasta = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   580 |     int res = _clearAndReserveMemory(meta, seq, reader, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:458:40:   required from ‘int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, TQualities&, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TQualities = seqan::String<char, seqan::Alloc<> >; TFormatTag = seqan::Tag<seqan::TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   458 |                 res = seqan::readRecord(id, seq, qual, *_mmapReaderDoublePass, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                       ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:680:38:   required from ‘int seqan::readRecord(TId&, TSequence&, TQualities&, SequenceStream&) [with TId = String<char, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TQualities = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   680 |         res = seqIO._impl->readRecord(id, seq, qual, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |               ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:303:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   303 |         if (readRecord(id, seq, quals, inStream) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/new_allocator.h:34,
                 from /usr/include/c++/14/x86_64-redhat-linux/bits/c++allocator.h:33,
                 from /usr/include/c++/14/bits/allocator.h:46,
                 from /usr/include/c++/14/bits/stl_tree.h:64:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 38%] Linking CXX executable ../../../bin/fx_fastq_stats
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_fastq_stats.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -o ../../../bin/fx_fastq_stats  -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 38%] Built target fx_fastq_stats
make  -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 40%] Building CXX object extras/apps/gustaf/CMakeFiles/gustaf.dir/gustaf.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/gustaf/CMakeFiles/gustaf.dir/gustaf.cpp.o -MF CMakeFiles/gustaf.dir/gustaf.cpp.o.d -o CMakeFiles/gustaf.dir/gustaf.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:30:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_types.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_types.h:154:32: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 | struct LessPos : public ::std::binary_function <TMatch, TMatch, bool> {
      |                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_types.h:206:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  206 | struct LessLength : public ::std::binary_function <TMatch, TMatch, bool> {
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/parse_lm.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/create_stellarmatches_from_file.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_parseOptions.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:28:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_out.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:43,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:30:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function ‘int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  190 |     else
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  192 |         streamWriteChar(stream, '\t');
      |         ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:25:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   152 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:688:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:199:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  199 |                 TAlign ali(align);
      |                        ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_smart_pointer.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   252 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:587:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   587 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  444 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:185:17:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   185 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = BucketMap<long unsigned int>; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:185:17:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   185 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:206:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:785:16:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   785 |         integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:809:19:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   809 |     integrateAlign(align, localAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:77:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   244 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:780:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   780 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:809:19:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   809 |     integrateAlign(align, localAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  437 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of ‘void seqan::findIntervals(const Graph<TSpec>&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue, String<TCargo>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<unsigned int, unsigned int>, StorePointsOnly>, Alloc<> >; TVertexDescriptor = unsigned int; TValue = unsigned int; TCargo = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1917:15:   required from ‘void seqan::findIntervals(const Graph<TSpec>&, const TPropertyMap&, TValue, TValue, String<TEmission>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<unsigned int, unsigned int>, StorePointsOnly>, Alloc<> >; TValue = unsigned int; TCargo = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1917 |         findIntervals(g, pm, act_knot, query_begin, query_end, result);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1898:15:   required from ‘void seqan::findIntervals(const IntervalTree<TValue, TCargo>&, TValue, TValue, String<TAlphabet>&) [with TValue = unsigned int; TCargo = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1898 |         findIntervals(tree.g,tree.pm,query_begin,query_end,result);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:240:18:   required from ‘bool _checkRightMateMatches(const TMatch&, const seqan::String<TString>&, const TMSplazerChain&, const MSplazerOptions&) [with TMatch = StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >; TMSplazerChain = MSplazerChain<seqan::Graph<seqan::Directed<int> >, unsigned int, seqan::String<int>, SparsePropertyMap<Breakpoint<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, unsigned int>, seqan::String<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   240 |     findIntervals(gustafChain.rightMateTree, mateIntervalBegin, mateIntervalEnd, confMateMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:278:42:   required from ‘bool _checkMateMatches(const TMatch&, const seqan::String<TString>&, const TMSplazerChain&, const MSplazerOptions&) [with TMatch = StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >; TMSplazerChain = MSplazerChain<seqan::Graph<seqan::Directed<int> >, unsigned int, seqan::String<int>, SparsePropertyMap<Breakpoint<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, unsigned int>, seqan::String<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   278 |             return _checkRightMateMatches(sMatch, queryMatches, gustafChain, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:345:35:   required from ‘void _initialiseGraphMatePairs(QueryMatches<StellarMatch<TSequence, TId> >&, TMSplazerChain&, const MSplazerOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TMSplazerChain = MSplazerChain<seqan::Graph<seqan::Directed<int> >, unsigned int, seqan::String<int>, SparsePropertyMap<Breakpoint<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, unsigned int>, seqan::String<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   345 |             if (!_checkMateMatches(queryMatches.matches[i], queryMatches.matches, chain, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_algorithms.h:644:42:   required from ‘void _chainQueryMatches(seqan::StringSet<QueryMatches<StellarMatch<TSequence, TId> > >&, seqan::String<TSequenceValue>&, seqan::String<TEmission>&, const seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::String<unsigned int, seqan::Alloc<> >&, const MSplazerOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TScoreAlloc = seqan::String<int>; TMSplazerChain = MSplazerChain<seqan::Graph<seqan::Directed<int> >, unsigned int, seqan::String<int>, SparsePropertyMap<Breakpoint<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, unsigned int>, seqan::String<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   644 |                 _initialiseGraphMatePairs(stellarMatches[i], chain, msplazerOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:224:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   224 |     _chainQueryMatches(stellarMatches, distanceScores, queryChains, queryIDs, queries, readJoinPositions, msplazerOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1949:26: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1949 |                 act_prop = property(pm,act_knot);
      |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<unsigned int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1961:43: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1961 |                                 next_prop = property(pm,targetVertex(it));
      |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<unsigned int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1982:51: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1982 |                                         next_prop = property(pm,targetVertex(it));
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<unsigned int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   447 |         return host(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                ~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:698:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   698 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19:   required from ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<typename Infix<THost>::Type, TSpec2>&) [with TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSpec2 = Tag<ArrayGaps_>; typename Infix<THost>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   154 |     integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:620:16:   required from ‘void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TCoord = seqan::Pair<long unsigned int, long unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   620 |         integrateAlign(align, infixAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:753:17:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   753 |                 _tracebackLeft(matrixLeft, (*endPair.i1).coord, infH, infV, seed, seedOld, endLeftH, endLeftV, align);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer.h:121:8:   required from ‘bool _writeGlobalBreakpoints(const seqan::String<TString>&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TId>&, const MSplazerOptions&, seqan::Vcf) [with TBreakpoint = Breakpoint<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::Vcf = seqan::Tag<seqan::Vcf_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   121 | struct Breakpoint
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |        ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:271:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   271 |     _writeGlobalBreakpoints(globalBreakpoints, databases, databaseIDs, msplazerOptions, Vcf());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11:   required from ‘void seqan::append(TTarget&, TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1608 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:177:15:   required from ‘bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::String<unsigned int, seqan::Alloc<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   177 |         append(seq, seqL);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:72:30:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    72 |         if (!_importSequences(msplazerOptions.queryFile[0], msplazerOptions.queryFile[1], msplazerOptions.revCompl, queries, queryIDs, shortQueryIDs, readJoinPositions))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |              ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TIterator>::Type = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:401:10:   required from ‘void seqan::assignSource(Gaps<TSequence, Tag<ArrayGaps_> >&, const TSequence2&) [with TSequence = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequence2 = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   401 |     value(gaps._source) = source;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:614:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   614 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:402:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TAlphabet>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<long unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   402 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:703:26:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   703 |                 _fillMatrixBestEndsLeft(matrixLeft, possibleEndsLeft, infH, infV, seed, seedOld, scoreMatrix);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11:   required from ‘void seqan::append(TTarget&, TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1608 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:177:15:   required from ‘bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::String<unsigned int, seqan::Alloc<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   177 |         append(seq, seqL);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:72:30:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    72 |         if (!_importSequences(msplazerOptions.queryFile[0], msplazerOptions.queryFile[1], msplazerOptions.revCompl, queries, queryIDs, shortQueryIDs, readJoinPositions))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:703:26:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   703 |                 _fillMatrixBestEndsLeft(matrixLeft, possibleEndsLeft, infH, infV, seed, seedOld, scoreMatrix);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, TraceBack_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, TraceBack_>; TValueTarget = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, TraceBack_>; TValueTarget = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, TraceBack_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, TraceBack_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:703:26:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   703 |                 _fillMatrixBestEndsLeft(matrixLeft, possibleEndsLeft, infH, infV, seed, seedOld, scoreMatrix);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::TraceBack_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::TraceBack_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Triple<long unsigned int, long unsigned int, int, void>; TSource = Triple<long unsigned int, long unsigned int, int, void>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:268:11:   required from ‘void seqan::move(TTarget&, TSource&) [with TTarget = Triple<long unsigned int, long unsigned int, int, void>; TSource = Triple<long unsigned int, long unsigned int, int, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   268 |     assign(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1056:13:   required from ‘void seqan::_arrayMoveForwardDefault(TSource1, TSource2, TTarget) [with TTarget = Triple<long unsigned int, long unsigned int, int, void>*; TSource1 = Triple<long unsigned int, long unsigned int, int, void>*; TSource2 = Triple<long unsigned int, long unsigned int, int, void>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1056 |         move(*target_begin, *source_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1600:29:   required from ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, False) [with TValue = Triple<long unsigned int, long unsigned int, int, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1600 |     _arrayMoveForwardDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = Triple<long unsigned int, long unsigned int, int, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1211:25:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = Triple<long unsigned int, long unsigned int, int, void>*; TSource1 = Triple<long unsigned int, long unsigned int, int, void>*; TSource2 = Triple<long unsigned int, long unsigned int, int, void>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1211 |         arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1295:22:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1929:12:   required from ‘void seqan::replace(TTarget&, TPositionBegin, TPositionEnd, const TSource&) [with TTarget = String<Triple<long unsigned int, long unsigned int, int, void>, Alloc<> >; TPositionBegin = int; TPositionEnd = int; TSource = String<Triple<long unsigned int, long unsigned int, int, void>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1929 |     replace(target, pos_begin, pos_end, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:224:20:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   224 |             replace(queue, 0, 2, String<TMerger>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, long unsigned int, int, void>& seqan::Triple<long unsigned int, long unsigned int, int, void>::operator=(const seqan::Triple<long unsigned int, long unsigned int, int, void>&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because ‘seqan::Triple<long unsigned int, long unsigned int, int, void>’ has user-provided ‘seqan::Triple<T1, T2, T3, TSpec>::Triple(const seqan::Triple<T1, T2, T3, TSpec>&) [with T1 = long unsigned int; T2 = long unsigned int; T3 = int; TSpec = void]’
  162 |     inline Triple(Triple const & _p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<ScoreAndID<int, long unsigned int>, Alloc<> >; TValue = ScoreAndID<int, long unsigned int>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = ScoreAndID<int, long unsigned int>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = ScoreAndID<int, long unsigned int>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = ScoreAndID<int, long unsigned int>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ScoreAndID<int, long unsigned int>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ScoreAndID<int, long unsigned int>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ScoreAndID<int, long unsigned int>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::ScoreAndID<int, long unsigned int>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = ScoreAndID<int, long unsigned int>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = ScoreAndID<int, long unsigned int>; TLess = std::less<ScoreAndID<int, long unsigned int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = ScoreAndID<int, long unsigned int>; TLess = std::less<ScoreAndID<int, long unsigned int> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<ScoreAndID<int, long unsigned int>, Alloc<> >; TValue = ScoreAndID<int, long unsigned int>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = ScoreAndID<int, long unsigned int>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = ScoreAndID<int, long unsigned int>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = ScoreAndID<int, long unsigned int>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ScoreAndID<int, long unsigned int>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ScoreAndID<int, long unsigned int>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = ScoreAndID<int, long unsigned int>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::ScoreAndID<int, long unsigned int>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = ScoreAndID<int, long unsigned int>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = ScoreAndID<int, long unsigned int>; TLess = std::less<ScoreAndID<int, long unsigned int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘typename seqan::LocalAlignmentFinder<TScoreValue>::TMatrixPosition seqan::_getNextBestEndPosition(LocalAlignmentFinder<TScoreValue>&, TScoreValue) [with TScoreValue = int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_waterman_eggert_impl.h:673:8,
    inlined from ‘TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder<TScoreValue>&, Gaps<TSource, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag<ArrayGaps_>; TScore = Score<int, Tag<Simple_> >; TDiagonal = int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:572:39,
    inlined from ‘bool seqan::nextLocalAlignment(Gaps<TSequenceV, TGapsSpecV>&, Gaps<TSequenceV, TGapsSpecV>&, LocalAlignmentEnumerator<Score<TValue, TSpec>, Tag<Banded_> >&) [with TScoreValue = int; TScoreSpec = Tag<Simple_>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag<ArrayGaps_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_enumeration_banded.h:109:35,
    inlined from ‘bool seqan::nextLocalAlignment(Align<TSource, TSpec>&, LocalAlignmentEnumerator<Score<TValue, TSpec>, Tag<Banded_> >&) [with TScoreValue = int; TScoreSpec = Tag<Simple_>; TSequence = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TAlignSpec = Tag<ArrayGaps_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_enumeration_banded.h:121:30,
    inlined from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:617:30,
    inlined from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551584’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 40%] Linking CXX executable ../../../bin/gustaf
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf && /usr/bin/cmake -E cmake_link_script CMakeFiles/gustaf.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/gustaf.dir/gustaf.cpp.o -o ../../../bin/gustaf  -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 40%] Built target gustaf
make  -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 41%] Building CXX object extras/apps/insegt/CMakeFiles/insegt.dir/insegt.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/insegt/CMakeFiles/insegt.dir/insegt.cpp.o -MF CMakeFiles/insegt.dir/insegt.cpp.o.d -o CMakeFiles/insegt.dir/insegt.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:14:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:1:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:16:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:21:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/create_gff.h: In function ‘void seqan::createAnnoCountGFF(TFile&, TAnnoCountStore&, TAnnoNormStore&, FragmentStore<TSpec, TConfig>&, TMap&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/create_gff.h:225:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  225 |         if (getValue(itAnno).typeId != INVALID_ID)
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/create_gff.h:228:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  228 |                 if (getValue(itAnno).contigId == INVALID_ID )
      |                 ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:23:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h: In function ‘bool seqan::ngsOverlapper(TOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:901:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  901 |     if (!readOutput.good())
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:903:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  903 |         createReadCountGFF(readOutput, readAnnoStore, fragStore);
      |         ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:908:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  908 |     if (!annoOutput.good())
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:910:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  910 |         createAnnoCountGFF(annoOutput, annoCountStore, annoNormStore, fragStore, mapO);
      |         ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:915:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  915 |     if (!tupleOutput.good())
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:917:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  917 |         createTupleCountGFF(tupleOutput, tupleCountStore, fragStore, options.thresholdCount, options.thresholdRPKM);
      |         ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp: In function ‘int main(int, const char**)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:188:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  188 |     if (res != ArgumentParser::PARSE_OK)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  191 |         if (options.maxTuple)
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:61:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h: In instantiation of ‘seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> > seqan::nodeDown(const Iter<TFragmentStore, AnnotationTree<TSpec> >&) [with TFragmentStore = FragmentStore<>; TSpec = void]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:45:64:   required from ‘void seqan::adjustParentEntries(FragmentStore<TSpec, TConfig>&) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:9: note:    45 |             getAnnotation(it).contigId = getAnnotation(nodeDown(it)).contigId;  // If no child exists: nothing happens
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:9: note:       |                                                        ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:865:21:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:9: note:   865 |         adjustParentEntries(fragStore);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:9: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:9: note:   197 |         ngsOverlapper(options);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:9: note:       |         ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:1281:54: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::FragmentStore<>, seqan::AnnotationTree<> >::Iter(const seqan::Iter<seqan::FragmentStore<>, seqan::AnnotationTree<> >&)’ is deprecated [-Wdeprecated-copy]
 1281 |         Iter<TFragmentStore, AnnotationTree<TSpec> > tmp(it);
      |                                                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note: because ‘seqan::Iter<seqan::FragmentStore<>, seqan::AnnotationTree<> >’ has user-provided ‘const seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> >& seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> >::operator=(const seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> >&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]’
  415 |         operator = (Iter const &_origin)
      |         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:1283:16: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::FragmentStore<>, seqan::AnnotationTree<> >::Iter(const seqan::Iter<seqan::FragmentStore<>, seqan::AnnotationTree<> >&)’ is deprecated [-Wdeprecated-copy]
 1283 |         return tmp;
      |                ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note: because ‘seqan::Iter<seqan::FragmentStore<>, seqan::AnnotationTree<> >’ has user-provided ‘const seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> >& seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> >::operator=(const seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> >&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]’
  415 |         operator = (Iter const &_origin)
      |         ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of ‘void seqan::findIntervals(const Graph<TSpec>&, const TPropertyMap&, TValue, String<TEmission>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<long int, unsigned int>, StorePointsOnly>, Alloc<> >; TValue = unsigned int; TCargo = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_intervaltree.h:182:15:   required from ‘void seqan::findIntervalsForInterval(String<TSequenceValue>&, TIntervalTree&, TInterval&, const unsigned int&) [with TIntervalTree = IntervalTree<long int, unsigned int>; TInterval = Interval<unsigned int>; TCargo = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:   182 |         findIntervals(intervalTree.g, intervalTree.pm, interval.i1 + offsetInterval, result1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:82:27:   required from ‘void seqan::getIdsForRead(TAnnoIds&, FragmentStore<TSpec, TConfig>&, TIntervalTree&, TIntervals&, unsigned int) [with TAnnoIds = StringSet<String<unsigned int, Alloc<> >, Owner<> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TIntervalTree = IntervalTree<long int, unsigned int>; TIntervals = String<Interval<unsigned int>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:    82 |                 findIntervalsForInterval(value(itR), intervalTree, getValue(itI), offsetInterval);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/fusion.h:775:18:   required from ‘void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore<TSpec, TConfig>&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String<ReadAnnoStoreElement<unsigned int> >; TAnnoCountStore = String<unsigned int, Alloc<> >; TTupleCountStore = String<TupleCountStoreElement<unsigned int> >; TTupleCountStore_Fusion = String<TupleCountStoreElement_Fusion<unsigned int> >; TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:   775 |                                 getIdsForRead(ids, fragStore, *intervalTree, getValue(it).intervals, offsetInterval);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:       |                                 ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:884:20:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:   884 |                 getResults_Fusion(readAnnoStore, annoCountStore, tupleCountStore, tupleCountStore_Fusion, fragStore, options.nTuple, options.exact_nTuple, options.offsetInterval, options.thresholdGaps, options.unknownO);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:   197 |         ngsOverlapper(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:       |         ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1827:26: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1827 |                 act_prop = property(pm,act_knot);
      |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<long int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1838:43: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1838 |                                 next_prop = property(pm,targetVertex(it));
      |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<long int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1859:51: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1859 |                                         next_prop = property(pm,targetVertex(it));
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<long int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<long int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, Tag<TExpand>) [with T = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1189 |     return begin(me, tag_) + pos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |            ~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1169 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20:   required from ‘void seqan::insertGaps(Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition, TCount) [with TSequence = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TPosition = long int; TCount = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   465 |     TIter it = iter(gaps, clippedViewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2801:19:   required from ‘void seqan::convertPairWiseToGlobalAlignment(FragmentStore<TSpec, TConfig>&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TContigGapsString = StringSet<String<GapAnchor<long int>, Alloc<> >, Owner<ConcatDirect<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  2801 |                                                                 insertGaps(gaps, insPos - rBegin, blkLen);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                                                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45:   required from ‘void seqan::_readImpl(TStreamOrReader&, FragmentStore<TSpec, TConfig>&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   459 |             convertPairWiseToGlobalAlignment(fragStore, contigAnchorGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   474 |         _readImpl(reader, fragStore, Sam(), importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   496 |         read(file, fragStore, Sam(), FragStoreImportFlags());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   838 |         read(fileSAM, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   197 |         ngsOverlapper(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:12:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>*; TParam = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>; typename Value<TIterator>::Type = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>; TValue2 = const Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>; TSource = Segment<String<GapAnchor<long int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1018 |         create(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2738:18:   required from ‘void seqan::convertPairWiseToGlobalAlignment(FragmentStore<TSpec, TConfig>&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TContigGapsString = StringSet<String<GapAnchor<long int>, Alloc<> >, Owner<ConcatDirect<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2738 |                 TContigGapsPW           contigGapsPW(/*contigInfix, */gaps[(*it).id]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45:   required from ‘void seqan::_readImpl(TStreamOrReader&, FragmentStore<TSpec, TConfig>&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   459 |             convertPairWiseToGlobalAlignment(fragStore, contigAnchorGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   474 |         _readImpl(reader, fragStore, Sam(), importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   496 |         read(file, fragStore, Sam(), FragStoreImportFlags());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   838 |         read(fileSAM, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   197 |         ngsOverlapper(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:13:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Value<TIterator>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TValue2 = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSource = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1018 |         create(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2739:15:   required from ‘void seqan::convertPairWiseToGlobalAlignment(FragmentStore<TSpec, TConfig>&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TContigGapsString = StringSet<String<GapAnchor<long int>, Alloc<> >, Owner<ConcatDirect<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2739 |                 TReadGaps                       readGaps(store.readSeqStore[(*it).readId], (*it).gaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                 ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45:   required from ‘void seqan::_readImpl(TStreamOrReader&, FragmentStore<TSpec, TConfig>&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   459 |             convertPairWiseToGlobalAlignment(fragStore, contigAnchorGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   474 |         _readImpl(reader, fragStore, Sam(), importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   496 |         read(file, fragStore, Sam(), FragStoreImportFlags());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   838 |         read(fileSAM, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   197 |         ngsOverlapper(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<long int>, void>, Alloc<> >; TValue = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<long int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1117:14:   required from ‘void seqan::_storeAppendContig(FragmentStore<TSpec, TConfig>&, TId&, TName&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TId = unsigned int; TName = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1117 |                 appendValue(fragStore.contigStore, TContigElement());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_gff.h:256:23:   required from ‘void seqan::_storeOneAnnotation(TFragmentStore&, IOContextGff_<TFragmentStore, TSpec>&) [with TFragmentStore = FragmentStore<>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   256 |     _storeAppendContig(fragStore, ctx.annotation.contigId, ctx.contigName);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_gff.h:331:32:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Gff) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Gff = Tag<TagGff_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   331 |             _storeOneAnnotation(fragStore, ctx);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:861:10:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   861 |             read(fileGFF, fragStore, Gff());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   197 |         ngsOverlapper(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:577:30:   required from ‘void seqan::_readAlignments(TStreamOrReader&, BamIOContext<TNameStore, TNameStoreCache>&, FragmentStore<TSpec, TConfig>&, TContigAnchorGaps&, TMatchMateInfos&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TNameStore = StringSet<String<char, Alloc<> > >; TNameStoreCache = NameStoreCache<StringSet<String<char, Alloc<> > >, String<char, Alloc<> > >; TSpec = void; TConfig = FragmentStoreConfig<void>; TContigAnchorGaps = StringSet<String<GapAnchor<long int>, Alloc<> >, Owner<ConcatDirect<void> > >; TMatchMateInfos = String<MatchMateInfo_<long int, unsigned int>, Alloc<> >; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   577 |             _readOneAlignment(streamOrReader, bamIOContext, fragStore, contigAnchorGaps, matchMateInfos, contextSAM,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     578 |                               importFlags, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                               ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:452:24:   required from ‘void seqan::_readImpl(TStreamOrReader&, FragmentStore<TSpec, TConfig>&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   452 |         _readAlignments(streamOrReader, bamIOContext, fragStore, contigAnchorGaps, matchMateInfos, tag, importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   474 |         _readImpl(reader, fragStore, Sam(), importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   496 |         read(file, fragStore, Sam(), FragStoreImportFlags());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   838 |         read(fileSAM, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   197 |         ngsOverlapper(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:577:30:   required from ‘void seqan::_readAlignments(TStreamOrReader&, BamIOContext<TNameStore, TNameStoreCache>&, FragmentStore<TSpec, TConfig>&, TContigAnchorGaps&, TMatchMateInfos&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TNameStore = StringSet<String<char, Alloc<> > >; TNameStoreCache = NameStoreCache<StringSet<String<char, Alloc<> > >, String<char, Alloc<> > >; TSpec = void; TConfig = FragmentStoreConfig<void>; TContigAnchorGaps = StringSet<String<GapAnchor<long int>, Alloc<> >, Owner<ConcatDirect<void> > >; TMatchMateInfos = String<MatchMateInfo_<long int, unsigned int>, Alloc<> >; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   577 |             _readOneAlignment(streamOrReader, bamIOContext, fragStore, contigAnchorGaps, matchMateInfos, contextSAM,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     578 |                               importFlags, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                               ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:452:24:   required from ‘void seqan::_readImpl(TStreamOrReader&, FragmentStore<TSpec, TConfig>&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   452 |         _readAlignments(streamOrReader, bamIOContext, fragStore, contigAnchorGaps, matchMateInfos, tag, importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   474 |         _readImpl(reader, fragStore, Sam(), importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   496 |         read(file, fragStore, Sam(), FragStoreImportFlags());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   838 |         read(fileSAM, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   197 |         ngsOverlapper(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:56,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function ‘unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String<CigarElement<> >; TGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
  534 |                 insertGaps(it, cigar[i].count);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here
  535 |             case 'I':
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function ‘unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String<CigarElement<> >; TGaps = Gaps<Nothing, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
  534 |                 insertGaps(it, cigar[i].count);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here
  535 |             case 'I':
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function ‘unsigned int seqan::cigarToGapAnchorContig(const TCigarString&, TGaps&) [with TCigarString = String<CigarElement<> >; TGaps = Gaps<Nothing, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:564:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
  564 |                 insertGaps(it, cigar[i].count);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:565:13: note: here
  565 |             case 'D':
      |             ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 41%] Linking CXX executable ../../../bin/insegt
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt && /usr/bin/cmake -E cmake_link_script CMakeFiles/insegt.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/insegt.dir/insegt.cpp.o -o ../../../bin/insegt  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 41%] Built target insegt
make  -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 43%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -MF CMakeFiles/mason_sim.dir/external_split_merge.cpp.o.d -o CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/refwrap.h:39,
                 from /usr/include/c++/14/vector:68,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.h:49:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 43%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -MF CMakeFiles/mason_sim.dir/genomic_variants.cpp.o.d -o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:52:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of ‘void seqan::findIntervals(const Graph<TSpec>&, const TPropertyMap&, TValue, String<TEmission>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<int, GenomicInterval>, StorePointsOnly>, Alloc<> >; TValue = int; TCargo = GenomicInterval]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1886:15:   required from ‘void seqan::findIntervals(const IntervalTree<TValue, TCargo>&, TValue, String<TAlphabet>&) [with TValue = int; TCargo = GenomicInterval]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1886 |         findIntervals(it.g,it.pm,query,result);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:644:18:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   644 |     findIntervals(svIntervalTree, svPos, intervals);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1827:26: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1827 |                 act_prop = property(pm,act_knot);
      |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, GenomicInterval>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1838:43: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1838 |                                 next_prop = property(pm,targetVertex(it));
      |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, GenomicInterval>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1859:51: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1859 |                                         next_prop = property(pm,targetVertex(it));
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, GenomicInterval>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:234:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   234 |                 append(seq, infix(contig, lastPos, snpRecord.pos));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = const seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1477 |             typename Size<T>::Type new_length = reserve(me, me_length + 1, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TValue = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:246:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   246 |                 appendValue(seq, snpRecord.to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:234:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   234 |                 append(seq, infix(contig, lastPos, snpRecord.pos));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
[ 45%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o -MF CMakeFiles/mason_sim.dir/mason_options.cpp.o.d -o CMakeFiles/mason_sim.dir/mason_options.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
[ 45%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -MF CMakeFiles/mason_sim.dir/methylation_levels.cpp.o.d -o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<String<char, Alloc<> > >; TValue = String<char, Alloc<> >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = String<char, Alloc<> >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = String<char, Alloc<> >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = String<char, Alloc<> >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = String<char, Alloc<> >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = String<char, Alloc<> >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::String<char, seqan::Alloc<> > >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = String<char, Alloc<> >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<String<char, Alloc<> > >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<String<char, Alloc<> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::HtmlToolDocPrinter_::_toHtml(const TSequence&) const [with TSequence = seqan::String<char, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/tool_doc.h:284:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551568’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::HtmlToolDocPrinter_::_toHtml(const TSequence&) const [with TSequence = seqan::String<char, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 46%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_454.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_454.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/stdexcept:39,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = const seqan::SimpleType<unsigned char, seqan::Dna_>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1477 |             typename Size<T>::Type new_length = reserve(me, me_length + 1, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TValue = SimpleType<unsigned char, Dna_>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:372:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   372 |             appendValue(seq, seqan::Dna(i % 4));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<CigarElement<> >; TValue = CigarElement<>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = CigarElement<>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::CigarElement<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<CigarElement<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<CigarElement<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘std::pair<int, int> appendOperation(TCigarString&, char)’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551600’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/stdexcept:38:
/usr/include/c++/14/new: In function ‘std::pair<int, int> appendOperation(TCigarString&, char)’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 46%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_base.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_base.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/stdexcept:39,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 48%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_genome.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:42:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = const char; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1477 |             typename Size<T>::Type new_length = reserve(me, me_length + 1, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TValue = char; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TValue = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:69:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:    69 |                 appendValue(contig, 'A');
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 48%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/stdexcept:39,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h: In instantiation of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THost = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; typename seqan::RemoveReference<THost_>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:259:72:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   259 |         _simulateSequence(seq, rng, TRevCompFrag(prefix(frag, lenInRef)), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                                                                        ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  161 |             _host(std::forward<THost_>(host))
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  165 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:111:7:   required from ‘void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString<seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >, seqan::Tag<seqan::ModReverse_> >; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TRng = seqan::Rng<seqan::MersenneTwister>; TCigarString = seqan::String<seqan::CigarElement<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   111 | class ModifiedIterator<THost, ModView<TFunctor> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:259:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   259 |         _simulateSequence(seq, rng, TRevCompFrag(prefix(frag, lenInRef)), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:166:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   166 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THost = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; typename seqan::RemoveReference<THost_>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   161 |             _host(std::forward<THost_>(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:259:72:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   259 |         _simulateSequence(seq, rng, TRevCompFrag(prefix(frag, lenInRef)), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                        ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:670:20:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, TSpec>, const seqan::Tag<TExpand> >::Type seqan::end(ModifiedString<THost, TSpec>&, Tag<TExpand>) [with THost = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > >; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, TSpec>, const Tag<TExpand> >::Type = ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   670 |     TResult tmp(end(host(me), tag_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:452:102:   required from ‘typename seqan::Iterator<const seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(const ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = ModifiedString<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >; TTagSpec = Standard_; typename Iterator<const ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   452 |     typename Iterator< ModifiedString<THost, ModReverse> const, Tag<TTagSpec> const >::Type temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                                                   ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:193:25:   required from ‘void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString<seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >, seqan::Tag<seqan::ModReverse_> >; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TRng = seqan::Rng<seqan::MersenneTwister>; TCigarString = seqan::String<seqan::CigarElement<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   193 |     TFragIter it = begin(frag, seqan::Standard());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:259:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   259 |         _simulateSequence(seq, rng, TRevCompFrag(prefix(frag, lenInRef)), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = const seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1477 |             typename Size<T>::Type new_length = reserve(me, me_length + 1, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TValue = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:201:28:   required from ‘void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TRng = seqan::Rng<seqan::MersenneTwister>; TCigarString = seqan::String<seqan::CigarElement<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   201 |                 appendValue(read, *it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:257:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   257 |         _simulateSequence(seq, rng, prefix(frag, lenInRef), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<CigarElement<> >; TValue = CigarElement<>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = CigarElement<>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::CigarElement<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<CigarElement<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<CigarElement<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘std::pair<int, int> appendOperation(TCigarString&, char)’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551600’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/stdexcept:38:
/usr/include/c++/14/new: In function ‘std::pair<int, int> appendOperation(TCigarString&, char)’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 48%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/stdexcept:39,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h: In instantiation of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THost = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; typename seqan::RemoveReference<THost_>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:146:76:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   146 |         _simulateSequence(seq, rng, TRevCompFrag(prefix(frag, sampleLength)), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                                                                            ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  161 |             _host(std::forward<THost_>(host))
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  165 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:111:7:   required from ‘void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString<seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >, seqan::Tag<seqan::ModReverse_> >; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TRng = seqan::Rng<seqan::MersenneTwister>; TCigarString = seqan::String<seqan::CigarElement<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   111 | class ModifiedIterator<THost, ModView<TFunctor> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:146:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   146 |         _simulateSequence(seq, rng, TRevCompFrag(prefix(frag, sampleLength)), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:166:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   166 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THost = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; typename seqan::RemoveReference<THost_>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   161 |             _host(std::forward<THost_>(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:146:76:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |         _simulateSequence(seq, rng, TRevCompFrag(prefix(frag, sampleLength)), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                            ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:670:20:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, TSpec>, const seqan::Tag<TExpand> >::Type seqan::end(ModifiedString<THost, TSpec>&, Tag<TExpand>) [with THost = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > >; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, TSpec>, const Tag<TExpand> >::Type = ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   670 |     TResult tmp(end(host(me), tag_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:452:102:   required from ‘typename seqan::Iterator<const seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(const ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = ModifiedString<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >; TTagSpec = Standard_; typename Iterator<const ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   452 |     typename Iterator< ModifiedString<THost, ModReverse> const, Tag<TTagSpec> const >::Type temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                                                   ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:59:25:   required from ‘void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString<seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >, seqan::Tag<seqan::ModReverse_> >; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TRng = seqan::Rng<seqan::MersenneTwister>; TCigarString = seqan::String<seqan::CigarElement<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    59 |     TFragIter it = begin(frag, seqan::Standard());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:146:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |         _simulateSequence(seq, rng, TRevCompFrag(prefix(frag, sampleLength)), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = const seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1477 |             typename Size<T>::Type new_length = reserve(me, me_length + 1, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TValue = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:67:28:   required from ‘void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TRng = seqan::Rng<seqan::MersenneTwister>; TCigarString = seqan::String<seqan::CigarElement<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    67 |                 appendValue(read, *it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:144:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   144 |         _simulateSequence(seq, rng, prefix(frag, sampleLength), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<CigarElement<> >; TValue = CigarElement<>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = CigarElement<>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::CigarElement<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<CigarElement<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<CigarElement<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘std::pair<int, int> appendOperation(TCigarString&, char)’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551600’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/stdexcept:38:
/usr/include/c++/14/new: In function ‘std::pair<int, int> appendOperation(TCigarString&, char)’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 50%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -MF CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o.d -o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/stdexcept:39,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:38:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:42:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function ‘int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  190 |     else
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  192 |         streamWriteChar(stream, '\t');
      |         ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:40:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1925 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, const TValue2&, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1964 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length, val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = unsigned int; TValue = SimpleType<unsigned char, Dna5_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11:   required from ‘int seqan::readRegion(String<TValue, TSpec>&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   426 |     resize(str, toRead, TValue());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22:   required from ‘int seqan::readSequence(String<TValue, TSpec>&, const FaiIndex&, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   505 |     return readRegion(str, index, refId, 0, sequenceLength(index, refId));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:268:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   268 |         if (readSequence(seq, faiIndex, currRID) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 50%] Linking CXX static library libmason_sim.a
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -P CMakeFiles/mason_sim.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_sim.dir/link.txt --verbose=1
/usr/bin/ar qc libmason_sim.a CMakeFiles/mason_sim.dir/external_split_merge.cpp.o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o CMakeFiles/mason_sim.dir/mason_options.cpp.o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o CMakeFiles/mason_sim.dir/simulate_454.cpp.o CMakeFiles/mason_sim.dir/simulate_base.cpp.o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o
/usr/bin/ranlib libmason_sim.a
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 50%] Built target mason_sim
make  -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 50%] Building CXX object extras/apps/mason2/CMakeFiles/mason_genome.dir/mason_genome.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_genome.dir/mason_genome.cpp.o -MF CMakeFiles/mason_genome.dir/mason_genome.cpp.o.d -o CMakeFiles/mason_genome.dir/mason_genome.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:40:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:42:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 51%] Linking CXX executable ../../../bin/mason_genome
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_genome.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_genome.dir/mason_genome.cpp.o -o ../../../bin/mason_genome  -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 51%] Built target mason_genome
make  -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 51%] Building CXX object extras/apps/mason2/CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -MF CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o.d -o CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:39:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1925 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, const TValue2&, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1964 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length, val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = unsigned int; TValue = SimpleType<unsigned char, Dna5_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11:   required from ‘int seqan::readRegion(String<TValue, TSpec>&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   426 |     resize(str, toRead, TValue());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22:   required from ‘int seqan::readSequence(String<TValue, TSpec>&, const FaiIndex&, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   505 |     return readRegion(str, index, refId, 0, sequenceLength(index, refId));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:166:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   166 |         if (readSequence(contig, faiIndex, i) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 51%] Linking CXX executable ../../../bin/mason_methylation
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_methylation.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -o ../../../bin/mason_methylation  -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 51%] Built target mason_methylation
make  -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 51%] Building CXX object extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -MF CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o.d -o CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:39:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from ‘int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader<TFile, DoublePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFile = String<char, MMap<> >; TSpec = Tag<StringReader_>; TTag = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   262 |     reserve(seq, seqLength, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from ‘int seqan::readRecord(TIdString&, TSeqString&, RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFile = String<char, MMap<> >; TPass = DoublePass<Tag<StringReader_> >; Fasta = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   557 |     int res = _clearAndReserveMemory(meta, seq, reader, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:501:40:   required from ‘int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFormatTag = seqan::Tag<seqan::TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   501 |                 res = seqan::readRecord(id, seq, *_mmapReaderDoublePass, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                       ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:697:38:   required from ‘int seqan::readRecord(TId&, TSequence&, SequenceStream&) [with TId = String<char, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   697 |         res = seqIO._impl->readRecord(id, seq, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |               ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:202:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   202 |         if (readRecord(fragId, fragSeq, inFragments) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 53%] Linking CXX executable ../../../bin/mason_frag_sequencing
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_frag_sequencing.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -o ../../../bin/mason_frag_sequencing  -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 53%] Built target mason_frag_sequencing
make  -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 53%] Building CXX object extras/apps/mason2/CMakeFiles/mason_variator.dir/mason_variator.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_variator.dir/mason_variator.cpp.o -MF CMakeFiles/mason_variator.dir/mason_variator.cpp.o.d -o CMakeFiles/mason_variator.dir/mason_variator.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:48:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function ‘int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  190 |     else
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  192 |         streamWriteChar(stream, '\t');
      |         ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:50:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1925 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, const TValue2&, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = int; TValue2 = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1964 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length, val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = int; TValue = SimpleType<unsigned char, Dna5_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:1085:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1085 |         resize(tos, options.numHaplotypes, from);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<StructuralVariantRecord>; TValue = StructuralVariantRecord; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = StructuralVariantRecord; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = StructuralVariantRecord; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = StructuralVariantRecord; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = StructuralVariantRecord; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = StructuralVariantRecord; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<StructuralVariantRecord>; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = StructuralVariantRecord; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<StructuralVariantRecord>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<StructuralVariantRecord>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘void StructuralVariantSimulator::_simulateFromSizes(Variants&, unsigned int, int, const seqan::CharString&)’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:317:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551504’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void StructuralVariantSimulator::_simulateFromSizes(Variants&, unsigned int, int, const seqan::CharString&)’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 54%] Linking CXX executable ../../../bin/mason_variator
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_variator.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_variator.dir/mason_variator.cpp.o -o ../../../bin/mason_variator  -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 54%] Built target mason_variator
make  -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 54%] Building CXX object extras/apps/mason2/CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -MF CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o.d -o CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:47:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function ‘int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  190 |     else
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  192 |         streamWriteChar(stream, '\t');
      |         ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp: In member function ‘int MasonMaterializerApp::run()’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:110:33: warning: catching polymorphic type ‘class MasonIOException’ by value [-Wcatch-value=]
  110 |         catch (MasonIOException e)
      |                                 ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 56%] Linking CXX executable ../../../bin/mason_materializer
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_materializer.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -o ../../../bin/mason_materializer  -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 56%] Built target mason_materializer
make  -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 58%] Building CXX object extras/apps/mason2/CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -MF CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o.d -o CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/refwrap.h:39,
                 from /usr/include/c++/14/vector:68,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:47:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function ‘int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  190 |     else
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  192 |         streamWriteChar(stream, '\t');
      |         ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/random.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:50:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Value<TIterator>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TValue2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:243:34:   required from ‘void seqan::_reinitArrayGaps(Gaps<TSequence, Tag<ArrayGaps_> >&) [with TSequence = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   243 |     _setLength(gaps, length(value(gaps._source)));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |                             ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:153:25:   required from ‘seqan::Gaps<TSequence, seqan::Tag<seqan::ArrayGaps_> >::Gaps(TSequence&) [with TSequence = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   153 |         _reinitArrayGaps(*this);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:221:57:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   221 |         seqan::Gaps<TContigInfix> gapsContig(contigInfix);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |                                                         ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:51:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:476:24:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   476 |     TConstSeqHIterator seqHIter = begin(seqH, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TKeywords>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TKeywords>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |     TScoreValue res = _setUpAndRunAlignment(traceSegments, source(gapsH), source(gapsV), scoringScheme, alignConfig,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     173 |                                             lowerDiag, upperDiag, algoTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   209 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   226 |     return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   229 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, lDiag, uDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TKeywords>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TKeywords>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |     TScoreValue res = _setUpAndRunAlignment(traceSegments, source(gapsH), source(gapsV), scoringScheme, alignConfig,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     173 |                                             lowerDiag, upperDiag, algoTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   209 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   226 |     return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   229 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, lDiag, uDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1205 |     TConstSeqHIterator itH = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, upperDiagonal(band)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TKeywords>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TKeywords>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |     TScoreValue res = _setUpAndRunAlignment(traceSegments, source(gapsH), source(gapsV), scoringScheme, alignConfig,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     173 |                                             lowerDiag, upperDiag, algoTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   209 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   226 |     return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   229 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, lDiag, uDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  619 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1206 |     TConstSeqHIterator itHEnd = begin(seqH, Rooted()) + _min(seqHlength - 1, upperDiagonal(band) + seqVlength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TKeywords>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TKeywords>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |     TScoreValue res = _setUpAndRunAlignment(traceSegments, source(gapsH), source(gapsV), scoringScheme, alignConfig,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     173 |                                             lowerDiag, upperDiag, algoTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   209 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   226 |     return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   229 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, lDiag, uDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:476:40:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   476 |     TConstSeqHIterator seqHIter = begin(seqH, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                   ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TKeywords>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TKeywords>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |     TScoreValue res = _setUpAndRunAlignment(traceSegments, source(gapsH), source(gapsV), scoringScheme, alignConfig,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     173 |                                             lowerDiag, upperDiag, algoTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   209 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   226 |     return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   229 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, lDiag, uDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:41:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                      ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TKeywords>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TKeywords>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |     TScoreValue res = _setUpAndRunAlignment(traceSegments, source(gapsH), source(gapsV), scoringScheme, alignConfig,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     173 |                                             lowerDiag, upperDiag, algoTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   209 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   226 |     return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   229 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, lDiag, uDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TKeywords>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<long unsigned int, long unsigned int>, Alloc<> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TKeywords>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<long unsigned int, long unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |     TScoreValue res = _setUpAndRunAlignment(traceSegments, source(gapsH), source(gapsV), scoringScheme, alignConfig,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     173 |                                             lowerDiag, upperDiag, algoTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   209 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   226 |     return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   229 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, lDiag, uDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1925 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, const TValue2&, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1964 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length, val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = unsigned int; TValue = SimpleType<unsigned char, Dna5_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11:   required from ‘int seqan::readRegion(String<TValue, TSpec>&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   426 |     resize(str, toRead, TValue());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22:   required from ‘int seqan::readSequence(String<TValue, TSpec>&, const FaiIndex&, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   505 |     return readRegion(str, index, refId, 0, sequenceLength(index, refId));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:817:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   817 |             if (readSequence(refSeq, vcfMat.faiIndex, rID) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/new_allocator.h:34,
                 from /usr/include/c++/14/x86_64-redhat-linux/bits/c++allocator.h:33,
                 from /usr/include/c++/14/bits/allocator.h:46,
                 from /usr/include/c++/14/vector:63:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 58%] Linking CXX executable ../../../bin/mason_simulator
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_simulator.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -o ../../../bin/mason_simulator  -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 58%] Built target mason_simulator
make  -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 59%] Building CXX object extras/apps/mason2/CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -MF CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o.d -o CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:42:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:46:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function ‘int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  190 |     else
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  192 |         streamWriteChar(stream, '\t');
      |         ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp: In member function ‘int MasonSplicingApp::run()’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning: catching polymorphic type ‘class MasonIOException’ by value [-Wcatch-value=]
  138 |         catch (MasonIOException e)
      |                                 ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11:   required from ‘void seqan::append(TTarget&, TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:  1608 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:292:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:   292 |                 append(transcript, buffer);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11:   required from ‘void seqan::append(TTarget&, TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1608 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:292:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   292 |                 append(transcript, buffer);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 59%] Linking CXX executable ../../../bin/mason_splicing
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_splicing.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -o ../../../bin/mason_splicing  -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 59%] Built target mason_splicing
make  -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 61%] Building CXX object extras/apps/mason2/CMakeFiles/mason_tests.dir/mason_tests.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_tests.dir/mason_tests.cpp.o -MF CMakeFiles/mason_tests.dir/mason_tests.cpp.o.d -o CMakeFiles/mason_tests.dir/mason_tests.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:40:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:38:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<CigarElement<> >; TValue = CigarElement<>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = CigarElement<>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::CigarElement<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<CigarElement<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<CigarElement<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘std::pair<int, int> appendOperation(TCigarString&, char)’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22,
    inlined from ‘std::pair<int, int> appendOperation(TCigarString&, char)’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:356:28:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551600’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘std::pair<int, int> appendOperation(TCigarString&, char)’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<unsigned int, Alloc<> >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<unsigned int, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Value<seqan::IdManager<TIdType, TSpec> >::Type seqan::obtainId(IdManager<TIdType, TSpec>&) [with TIdType = unsigned int; TSpec = Tag<Default_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9,
    inlined from ‘typename seqan::VertexDescriptor<seqan::Graph<seqan::Directed<TCargo, TSpec> > >::Type seqan::addVertex(Graph<Directed<TCargo, TSpec> >&) [with TCargo = void; TSpec = const Tag<WithoutEdgeId_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘typename seqan::VertexDescriptor<seqan::Graph<seqan::Directed<TCargo, TSpec> > >::Type seqan::addVertex(Graph<Directed<TCargo, TSpec> >&) [with TCargo = void; TSpec = const Tag<WithoutEdgeId_>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 61%] Linking CXX executable ../../../bin/mason_tests
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_tests.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_tests.dir/mason_tests.cpp.o -o ../../../bin/mason_tests  -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 61%] Built target mason_tests
make  -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 61%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -MF CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o.d -o CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:46:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 61%] Linking CXX executable ../../../bin/roi_plot_thumbnails
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_plot_thumbnails.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -o ../../../bin/roi_plot_thumbnails  -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 61%] Built target roi_plot_thumbnails
make  -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 62%] Building CXX object extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/bam2roi.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/bam2roi.cpp.o -MF CMakeFiles/bam2roi.dir/bam2roi.cpp.o.d -o CMakeFiles/bam2roi.dir/bam2roi.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:40:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  343 |         public ::std::binary_function<TVertexDescriptor, TCargo, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function ‘void seqan::njTree(const String<TValue, TSpec>&, Graph<Tree<TCargo, TSpec> >&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  148 |     for (unsigned i = 0; i < length(mat); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  152 |         String<__int64> av;    // Average branch length to a combined node
      |         ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, StringSet<TSequence, TSpec>&, TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  416 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  420 |         TString seq;
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  534 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  538 |         String<TValue> mat;
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  880 |         TName seq1;
      |         ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, Graph<Tree<TCargo, TSpec> >&, TNames&, NewickFormat)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  985 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  988 |         TVertexDescriptor lastVertex = nilVertex;
      |         ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function ‘void seqan::getGappedConsensus(FragmentStore<TSpec, TConfig>&, TGappedConsensus&, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  387 |                 for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i)
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 |                         diff = (itGaps->gapPos - itGaps->seqPos);
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   91 |         public ::std::unary_function<Pair<TSize, TSize>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  102 |         public ::std::unary_function<Pair<TSize, Triple<TSize, TSize, TSize> >, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 62%] Building CXX object extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/roi_builder.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/roi_builder.cpp.o -MF CMakeFiles/bam2roi.dir/roi_builder.cpp.o.d -o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:38:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  343 |         public ::std::binary_function<TVertexDescriptor, TCargo, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function ‘void seqan::njTree(const String<TValue, TSpec>&, Graph<Tree<TCargo, TSpec> >&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  148 |     for (unsigned i = 0; i < length(mat); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  152 |         String<__int64> av;    // Average branch length to a combined node
      |         ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, StringSet<TSequence, TSpec>&, TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  416 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  420 |         TString seq;
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  534 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  538 |         String<TValue> mat;
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  880 |         TName seq1;
      |         ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, Graph<Tree<TCargo, TSpec> >&, TNames&, NewickFormat)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  985 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  988 |         TVertexDescriptor lastVertex = nilVertex;
      |         ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function ‘void seqan::getGappedConsensus(FragmentStore<TSpec, TConfig>&, TGappedConsensus&, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  387 |                 for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i)
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 |                         diff = (itGaps->gapPos - itGaps->seqPos);
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   91 |         public ::std::unary_function<Pair<TSize, TSize>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  102 |         public ::std::unary_function<Pair<TSize, Triple<TSize, TSize, TSize> >, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 64%] Linking CXX executable ../../../bin/bam2roi
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/bam2roi.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/bam2roi.dir/bam2roi.cpp.o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -o ../../../bin/bam2roi  -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 64%] Built target bam2roi
make  -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 64%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o -MF CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o.d -o CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:46:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:41:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:43:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 66%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o -MF CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o.d -o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/gff_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:48:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 66%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -MF CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o.d -o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:38:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 67%] Linking CXX executable ../../../bin/roi_feature_projection
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_feature_projection.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -o ../../../bin/roi_feature_projection  -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 67%] Built target roi_feature_projection
make  -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 67%] Building CXX object extras/apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o -MF CMakeFiles/param_chooser.dir/param_chooser.cpp.o.d -o CMakeFiles/param_chooser.dir/param_chooser.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:37:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:32:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif.h:64,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:38:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif/find_motif_pms1.h: In function ‘void seqan::pms1(TStrings&, TStrings&, const TType&, const TType&, const bool&, const Oops&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif/find_motif_pms1.h:264:82: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to<int>; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  264 |                                 std::count_if(vect_iter, upper_iter, std::bind2nd(std::equal_to<int>(), *vect_iter));
      |                                                                      ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_function.h:1435:
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif.h:66:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif/find_motif_projection.h: In function ‘void seqan::_filteringStep(TBucketAr&, TArray&, TType&, TStrings&, TPositions&, const TType&, const TType&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif/find_motif_projection.h:627:50: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater_equal<int>; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  627 |                                           bind2nd(std::greater_equal<int>(),static_cast<int>(s)));
      |                                           ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:712:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  712 |         struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:740:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  740 |         struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:766:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  766 |         struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:784:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  784 | struct LessSplicedScore : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:806:45: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  806 | struct LessSplicedScoreGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function ‘int seqan::qualityDistributionFromPrbFile(TFile&, TDistribution&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:198:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  198 |     if (skipWhitespaces(reader) != 0)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:201:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  201 |         int kickout = 0;
      |         ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function ‘int seqan::qualityDistributionFromFastQIntFile(TFile&, TDistribution&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:373:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  373 |     if (pm_options.verbose)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:376:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  376 |         resize(avg,pm_options.totalN,(TFloat)0.0);
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function ‘bool seqan::parseGappedParams(RazerSOptions<TSpec>&, TFile&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:934:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  934 |     if (value(reader) == 'e')
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  938 |         bool atLeastOneFound = false;
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1694 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  2308 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1466:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1466 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1689:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1689 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2300:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2300 |                         return mapReads(matches, genomeSet, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1689:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1689 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2303 |                         return mapReads(matches, genomeSet, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:5:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1435:15:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1435 |         TMyersFinder myersFinder(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1694 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2308 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1466:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1466 |         TGenomeInfixRev         infRev(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1694 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2308 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1467:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1467 |         TReadRev                        readRev(readSet[rseqNo]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1694 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2308 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1689:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1689 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2311:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2311 |                         return mapReads(matches, genomeSet, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1689:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1689 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2314:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2314 |                         return mapReads(matches, genomeSet, readSet, cnts, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1435:15:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1435 |         TMyersFinder myersFinder(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1694 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2308 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = long int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:620:11:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   620 |         assignSeq(firstRead, multiFasta[0], format);                    // read the first sequence
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1661:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1661 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2297 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1661:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1661 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2300:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2300 |                         return mapReads(matches, genomeSet, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1661:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1661 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2303 |                         return mapReads(matches, genomeSet, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:28:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1450:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1450 |         while (find(myersFinder, myersPattern, minScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1694 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2308 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1468:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1468 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1694 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2308 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/readSimulator.h:433:16:   required from ‘void seqan::simulateReads(TReadSet&, TReadIDs&, TGenomeSet&, int, int, TDistr&, int, int, double, bool) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIDs = StringSet<String<char, Alloc<> > >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TDistr = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   433 |                                 appendValue(readSet, read, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:755:15:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   755 |         simulateReads(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~^
     756 |                 testReads, dummyIDs, testGenome,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     757 |                 50000, maxErrors+1, logErrorDistribution, 0, 0, 0.5, true);     // generate 50K reads
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18:   required from ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void; typename Parameter_<T>::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   793 |         return container(hostIterator(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1473:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2308 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  294 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/readSimulator.h:433:16:   required from ‘void seqan::simulateReads(TReadSet&, TReadIDs&, TGenomeSet&, int, int, TDistr&, int, int, double, bool) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIDs = StringSet<String<char, Alloc<> > >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TDistr = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   433 |                                 appendValue(readSet, read, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:755:15:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   755 |         simulateReads(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~^
     756 |                 testReads, dummyIDs, testGenome,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     757 |                 50000, maxErrors+1, logErrorDistribution, 0, 0, 0.5, true);     // generate 50K reads
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TSize = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, float>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<float>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   484 |                 resize(pattern, span, (ErrorAlphabet)SEQAN_MATCH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<float>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<float>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:778:30:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   778 |                                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, float>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<float>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<float>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<float>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:778:30:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   778 |                                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int>; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2297 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int>; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2297 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int>; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2300:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2300 |                         return mapReads(matches, genomeSet, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int>; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2300:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2300 |                         return mapReads(matches, genomeSet, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int>; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2303 |                         return mapReads(matches, genomeSet, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int>; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2303 |                         return mapReads(matches, genomeSet, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, ErrorAlphabet_>*; TSource1 = SimpleType<unsigned char, ErrorAlphabet_>*; TSource2 = SimpleType<unsigned char, ErrorAlphabet_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, float>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<float>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<float>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<float>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:778:30:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   778 |                                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2087:9:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2087 |         TIndex swiftIndex(readSet, shape);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2297 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h: In function ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, float>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<float>; TDistance = Tag<HammingDistance_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:636:41: warning: this statement may fall through [-Wimplicit-fallthrough=]
  636 |                                         ++del;
      |                                         ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:638:33: note: here
  638 |                                 case SEQAN_INSERT:
      |                                 ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:656:41: warning: this statement may fall through [-Wimplicit-fallthrough=]
  656 |                                         ++del;
      |                                         ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:658:33: note: here
  658 |                                 case SEQAN_INSERT:
      |                                 ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h: In function ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<LevenshteinDistance_>, float>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<float>; TDistance = Tag<LevenshteinDistance_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:636:41: warning: this statement may fall through [-Wimplicit-fallthrough=]
  636 |                                         ++del;
      |                                         ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:638:33: note: here
  638 |                                 case SEQAN_INSERT:
      |                                 ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:656:41: warning: this statement may fall through [-Wimplicit-fallthrough=]
  656 |                                         ++del;
      |                                         ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:658:33: note: here
  658 |                                 case SEQAN_INSERT:
      |                                 ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 69%] Linking CXX executable ../../../bin/param_chooser
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/param_chooser.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/param_chooser.dir/param_chooser.cpp.o -o ../../../bin/param_chooser  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 69%] Built target param_chooser
make  -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 70%] Building CXX object extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -MF CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o.d -o CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:42:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:712:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  712 |         struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:740:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  740 |         struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:766:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  766 |         struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:784:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  784 | struct LessSplicedScore : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:806:45: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  806 | struct LessSplicedScoreGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function ‘int seqan::qualityDistributionFromPrbFile(TFile&, TDistribution&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:198:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  198 |     if (skipWhitespaces(reader) != 0)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:201:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  201 |         int kickout = 0;
      |         ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function ‘int seqan::qualityDistributionFromFastQIntFile(TFile&, TDistribution&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:373:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  373 |     if (pm_options.verbose)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:376:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  376 |         resize(avg,pm_options.totalN,(TFloat)0.0);
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function ‘bool seqan::parseGappedParams(RazerSOptions<TSpec>&, TFile&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:934:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  934 |     if (value(reader) == 'e')
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  938 |         bool atLeastOneFound = false;
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = long int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:620:11:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:   620 |         assignSeq(firstRead, multiFasta[0], format);                    // read the first sequence
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 70%] Linking CXX executable ../../../bin/test_funcs_param_chooser
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_funcs_param_chooser.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -o ../../../bin/test_funcs_param_chooser 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 70%] Built target test_funcs_param_chooser
make  -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 70%] Building CXX object extras/apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o -MF CMakeFiles/razers3.dir/razers.cpp.o.d -o CMakeFiles/razers3.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:57:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:845:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  845 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:862:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  862 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:896:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  896 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:934:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  934 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:968:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  968 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1009:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1009 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1046:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1046 |     public std::binary_function<TReadMatch, TReadMatch, int>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1087:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1087 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1130:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1130 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1174:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1174 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1218:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1218 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:75:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:127:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  127 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:83:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:264:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  264 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:320:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  320 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:365:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  365 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:48:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSScore, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1312 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSScore, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSQuality<>, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1315 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSQuality<>, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSPrefix, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1356:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1356 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSPrefix, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSPrefix, RazerSGapped, RazerSScore, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1312 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSScore, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1356:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1356 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSPrefix, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSPrefix, RazerSGapped, RazerSQuality<>, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1315 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSQuality<>, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1356:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1356 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSPrefix, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1359:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1359 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSScore, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1312 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSScore, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1359:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1359 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSQuality<>, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1315 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSQuality<>, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1359:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1359 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSUngapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1364:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1364 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSUngapped, RazerSScore, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1312 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSScore, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1364:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1364 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSUngapped, RazerSQuality<>, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1315 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSQuality<>, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1364:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1364 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSPrefix, RazerSUngapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1367:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1367 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSPrefix, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSPrefix, RazerSUngapped, RazerSScore, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1312 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSScore, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1367:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1367 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSPrefix, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSPrefix, RazerSUngapped, RazerSQuality<>, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1315 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSQuality<>, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1367:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1367 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSPrefix, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1370:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1370 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSScore, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1312 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSScore, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1370:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1370 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSQuality<>, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1315 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSQuality<>, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1370:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1370 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TAlignFunctor = FunctorGlobalEditDistAlign; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1224:33:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1224 |                 _writeAlignments(file, store, Sam(), FunctorGlobalEditDistAlign());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = std::basic_ofstream<char>; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   971 |         TSeqIter seqIt = begin(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1232:14:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1232 |         write(file, store, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1662:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1662 |         return _mapMatePairReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1208 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  841 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  868 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  841 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  868 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1662:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1662 |         return _mapMatePairReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1208 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  841 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  868 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  841 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  868 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1662:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1662 |         return _mapMatePairReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1208 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  841 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  868 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  841 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  868 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1662:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1662 |         return _mapMatePairReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1208 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  841 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  868 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  841 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  868 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TAlignFunctor = FunctorGlobalEditDistAlign; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1224:33:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1224 |                 _writeAlignments(file, store, Sam(), FunctorGlobalEditDistAlign());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:90:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TAlignFunctor = FunctorGlobalEditDistAlign; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1224:33:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1224 |                 _writeAlignments(file, store, Sam(), FunctorGlobalEditDistAlign());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = std::basic_ofstream<char>; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   971 |         TSeqIter seqIt = begin(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1232:14:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1232 |         write(file, store, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:972:32:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = std::basic_ofstream<char>; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   972 |         TSeqIter seqItEnd = end(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                             ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1232:14:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1232 |         write(file, store, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   792 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     793 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = void]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2785 |         _patternInit(filterPattern, options.errorRate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1087 |     _applyFilterOptions(filterPatternL, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  462 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   792 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     793 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Swift<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2896 |     _patternInit(filterPattern, options.errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1087 |     _applyFilterOptions(filterPatternL, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   792 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     793 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = Hamming_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = Hamming_; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2785 |         _patternInit(filterPattern, options.errorRate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1087 |     _applyFilterOptions(filterPatternL, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  462 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Swift<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2896 |     _patternInit(filterPattern, options.errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1087 |     _applyFilterOptions(filterPatternL, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   792 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     793 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   792 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     793 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   792 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     793 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:32:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Pigeonhole<void>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:924:42:   required from ‘bool seqan::find(Finder<THaystack, Pigeonhole<TPigeonholeSpec> >&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   924 |                 pattern.finderLength = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                               ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   695 |     while (find(filterFinderR, filterPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2979 |             matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3054 |             _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3216 |         return _mapSingleReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = void]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2785 |         _patternInit(filterPattern, options.errorRate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3026 |     _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3221:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3221 |         return _mapSingleReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  462 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2979 |             matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3054 |             _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3221:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3221 |         return _mapSingleReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:2047:73:   required from ‘bool seqan::windowFindBegin(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2047 |     pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                                ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1200:29:   required from ‘void seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, unsigned int, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1200 |         if (!windowFindBegin(filterFinderR, filterPatternR, tls.options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |              ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1489:38:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1489 |             _mapMatePairReadsParallel(store, contigId, threadLocalStorages, splitters, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20:   required from ‘void seqan::workVerification(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, Job<SingleVerification<TMatches, TFragmentStore, THitString, TOptions, TFilterPattern> >&, const String<unsigned int, Alloc<> >&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>; THitString = String<SwiftHitSemiGlobal_<long int>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   302 |         matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33:   required from ‘void seqan::_mapSingleReadsParallelToContig(FragmentStore<TSpec, TConfig>&, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, const TContigId&, TCounts&, char, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TContigId = unsigned int; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   757 |                 workVerification(tls, job, splitters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1039 |             _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = void]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2785 |         _patternInit(filterPattern, options.errorRate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:878:28:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   878 |         _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1208 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  462 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20:   required from ‘void seqan::workVerification(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, Job<SingleVerification<TMatches, TFragmentStore, THitString, TOptions, TFilterPattern> >&, const String<unsigned int, Alloc<> >&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>; THitString = String<SwiftHitSemiGlobal_<long int>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   302 |         matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33:   required from ‘void seqan::_mapSingleReadsParallelToContig(FragmentStore<TSpec, TConfig>&, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, const TContigId&, TCounts&, char, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TContigId = unsigned int; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   757 |                 workVerification(tls, job, splitters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1039 |             _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1208 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Swift<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2896 |     _patternInit(filterPattern, options.errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3026 |     _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3216 |         return _mapSingleReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2979 |             matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3054 |             _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3216 |         return _mapSingleReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Swift<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2896 |     _patternInit(filterPattern, options.errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:878:28:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   878 |         _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20:   required from ‘void seqan::workVerification(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, Job<SingleVerification<TMatches, TFragmentStore, THitString, TOptions, TFilterPattern> >&, const String<unsigned int, Alloc<> >&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>; THitString = String<SwiftHitSemiGlobal_<long int>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   302 |         matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33:   required from ‘void seqan::_mapSingleReadsParallelToContig(FragmentStore<TSpec, TConfig>&, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, const TContigId&, TCounts&, char, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TContigId = unsigned int; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   757 |                 workVerification(tls, job, splitters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1039 |             _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Pigeonhole<Hamming_>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:924:42:   required from ‘bool seqan::find(Finder<THaystack, Pigeonhole<TPigeonholeSpec> >&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   924 |                 pattern.finderLength = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                               ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<Hamming_>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   695 |     while (find(filterFinderR, filterPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = Hamming_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = Hamming_; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2785 |         _patternInit(filterPattern, options.errorRate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3026 |     _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3221:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3221 |         return _mapSingleReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  462 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:2047:73:   required from ‘bool seqan::windowFindBegin(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2047 |     pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                                                ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1200:29:   required from ‘void seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, unsigned int, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1200 |         if (!windowFindBegin(filterFinderR, filterPatternR, tls.options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |              ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1489:38:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1489 |             _mapMatePairReadsParallel(store, contigId, threadLocalStorages, splitters, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = Hamming_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = Hamming_; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2785 |         _patternInit(filterPattern, options.errorRate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:878:28:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   878 |         _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1208 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  462 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Swift<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2896 |     _patternInit(filterPattern, options.errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3026 |     _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3216 |         return _mapSingleReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Swift<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2896 |     _patternInit(filterPattern, options.errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:878:28:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   878 |         _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2979 |             matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3054 |             _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3216 |         return _mapSingleReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2979 |             matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3054 |             _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3221:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3221 |         return _mapSingleReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20:   required from ‘void seqan::workVerification(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, Job<SingleVerification<TMatches, TFragmentStore, THitString, TOptions, TFilterPattern> >&, const String<unsigned int, Alloc<> >&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>; THitString = String<SwiftHitSemiGlobal_<long int>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   302 |         matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33:   required from ‘void seqan::_mapSingleReadsParallelToContig(FragmentStore<TSpec, TConfig>&, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, const TContigId&, TCounts&, char, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TContigId = unsigned int; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   757 |                 workVerification(tls, job, splitters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1039 |             _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20:   required from ‘void seqan::workVerification(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, Job<SingleVerification<TMatches, TFragmentStore, THitString, TOptions, TFilterPattern> >&, const String<unsigned int, Alloc<> >&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>; THitString = String<SwiftHitSemiGlobal_<long int>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   302 |         matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33:   required from ‘void seqan::_mapSingleReadsParallelToContig(FragmentStore<TSpec, TConfig>&, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, const TContigId&, TCounts&, char, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TContigId = unsigned int; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   757 |                 workVerification(tls, job, splitters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1039 |             _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1208 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2979 |             matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3054 |             _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3216 |         return _mapSingleReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20:   required from ‘void seqan::workVerification(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, Job<SingleVerification<TMatches, TFragmentStore, THitString, TOptions, TFilterPattern> >&, const String<unsigned int, Alloc<> >&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>; THitString = String<SwiftHitSemiGlobal_<long int>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   302 |         matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33:   required from ‘void seqan::_mapSingleReadsParallelToContig(FragmentStore<TSpec, TConfig>&, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, const TContigId&, TCounts&, char, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TContigId = unsigned int; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   757 |                 workVerification(tls, job, splitters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1039 |             _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TAlignFunctor = FunctorGlobalEditDistAlign; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1224:33:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1224 |                 _writeAlignments(file, store, Sam(), FunctorGlobalEditDistAlign());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TDifference = long int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, Tag<TExpand>) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1189 |     return begin(me, tag_) + pos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >; TPos = long int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<long int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<long int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1169 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20:   required from ‘void seqan::insertGaps(Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition, TCount) [with TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TGapAnchors = String<GapAnchor<long int>, Alloc<> >; TPosition = long int; TCount = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   465 |     TIter it = iter(gaps, clippedViewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:628:15:   required from ‘void seqan::insertGap(Gaps<TSequence, TSpec>&, TPosition) [with TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<long int>, Alloc<> > >; TPosition = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   628 |     insertGaps(gaps, clippedViewPos, 1u);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2582:18:   required from ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TScore = Score<int, Tag<Simple_> >; TShrinkMatches = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2582 |                                                                 insertGap(gaps, insPos - rBegin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1231:40:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1231 |         convertMatchesToGlobalAlignment(store, scoreType, True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = std::basic_ofstream<char>; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   971 |         TSeqIter seqIt = begin(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1232:14:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1232 |         write(file, store, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = long int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:835:14:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   835 |     assignSeq(firstRead, multiFasta[0], format);            // read the first sequence
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:193:23:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, const char*, TRazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   193 |                 resize(seq[j], options.trimLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:186:23:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   186 |         if (!loadReads(store, toCString(readFileNames[0]), toCString(readFileNames[1]), options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                           ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:679:20:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   679 |     TFilterFinderR filterFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Pigeonhole<void>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:887:30:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   887 |                 finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:930:28:   required from ‘bool seqan::find(Finder<THaystack, Pigeonhole<TPigeonholeSpec> >&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   930 |                 if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   695 |     while (find(filterFinderR, filterPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>; TIntegral = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:896:43:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   896 |         finder.haystackEnd = begin(host(finder)) + (finder.endPos - length(pattern.shape) + 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:930:28:   required from ‘bool seqan::find(Finder<THaystack, Pigeonhole<TPigeonholeSpec> >&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   930 |                 if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   695 |     while (find(filterFinderR, filterPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:2054:30:   required from ‘bool seqan::windowFindBegin(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2054 |     if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1200:29:   required from ‘void seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, unsigned int, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1200 |         if (!windowFindBegin(filterFinderR, filterPatternR, tls.options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |              ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1489:38:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1489 |             _mapMatePairReadsParallel(store, contigId, threadLocalStorages, splitters, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Pigeonhole<Hamming_>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:887:30:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   887 |                 finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:930:28:   required from ‘bool seqan::find(Finder<THaystack, Pigeonhole<TPigeonholeSpec> >&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   930 |                 if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<Hamming_>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   695 |     while (find(filterFinderR, filterPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:2054:30:   required from ‘bool seqan::windowFindBegin(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2054 |     if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1200:29:   required from ‘void seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, unsigned int, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1200 |         if (!windowFindBegin(filterFinderR, filterPatternR, tls.options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1489:38:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1489 |             _mapMatePairReadsParallel(store, contigId, threadLocalStorages, splitters, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type seqan::appendMatePair(FragmentStore<TSpec, TConfig>&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; typename Size<typename FragmentStore<TSpec, TConfig>::TMatePairStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TMatePairStore = String<MatePairStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1657 |         appendValue(me.readSeqStore, read1, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:206:23:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, const char*, TRazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   206 |         appendMatePair(store, seq[0], seq[1], seqId[0], seqId[1]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:186:23:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   186 |         if (!loadReads(store, toCString(readFileNames[0]), toCString(readFileNames[1]), options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:398:24:   required from ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   398 |             appendValue(indexText(indexL), readSetL[j]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:865:24:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |             appendValue(indexText(index), store.readSeqStore[j]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TSize = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>; typename Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   484 |                 resize(pattern, span, (ErrorAlphabet)SEQAN_MATCH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:838:30:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   838 |             if (!chooseParams(options, pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type seqan::appendMatePair(FragmentStore<TSpec, TConfig>&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; typename Size<typename FragmentStore<TSpec, TConfig>::TMatePairStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TMatePairStore = String<MatePairStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1657 |         appendValue(me.readSeqStore, read1, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:206:23:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, const char*, TRazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   206 |         appendMatePair(store, seq[0], seq[1], seqId[0], seqId[1]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:186:23:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   186 |         if (!loadReads(store, toCString(readFileNames[0]), toCString(readFileNames[1]), options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:653:36:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   653 |     TReadSet & readSetL = host(host(filterPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2241:41:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  2241 |                     TMyersFinderRev     myersFinderRev(infRev);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                         ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   792 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     793 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Pigeonhole<void>; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2795:64:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2795 |                 std::cout << "  stepsize: " << getStepSize(host(filterPattern)) << std::endl;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                            ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:858:30:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   858 |         TIndex & index = host(tls.filterPattern);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                          ~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Pigeonhole<void>; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:858:30:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   858 |         TIndex & index = host(tls.filterPattern);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                          ~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:653:36:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   653 |     TReadSet & readSetL = host(host(filterPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:858:30:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   858 |         TIndex & index = host(tls.filterPattern);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                          ~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:838:30:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   838 |             if (!chooseParams(options, pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1105:63:   required from ‘bool seqan::_patternInitSmallStateBanded(TFinder&, const TNeedle2&, PatternState_<TNeedle, Myers<AlignTextBanded<TSpec, TFinderCSP, TPatternCSP>, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, void>; TNeedle = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1105 |         typename Size<TFinder>::Type const columns = length(container(finder)) + state.leftClip;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                             ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1297:44:   required from ‘bool seqan::_stateInit(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<AlignTextBanded<TSpec, TFinderCSP, TPatternCSP>, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1297 |         return _patternInitSmallStateBanded(finder, needle, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1654:18:   required from ‘bool seqan::find(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<AlignTextBanded<TSpec, TFinderCSP, TPatternCSP>, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1654 |                 if (!_stateInit(finder, needle, state))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1766:13:   required from ‘bool seqan::find(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = AlignTextBanded<FindInfix, NMatchesAll_, NMatchesAll_>; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1766 |         return find(finder, needle, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2177:16:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2177 |     while (find(myersFinder, readPrefix, state, minScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_interface.h:752:24:   required from ‘void seqan::goEnd(TIterator&) [with TIterator = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   752 |     goEnd(it, container(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |               ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:948:7:   required from ‘void seqan::goEnd(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   948 |         goEnd(hostIterator(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1656:18:   required from ‘bool seqan::find(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<AlignTextBanded<TSpec, TFinderCSP, TPatternCSP>, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TNeedle2 = ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1656 |             goEnd(finder);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1766:13:   required from ‘bool seqan::find(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TNeedle2 = ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = AlignTextBanded<FindPrefix, NMatchesAll_, NMatchesAll_>; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1766 |         return find(finder, needle, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2245:32:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<long unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2245 |                     while (find(myersFinderRev, readRev, verifier.revPatternState, maxScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  294 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2948:40:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2948 |     TReadSet & readSet = indexText(host(filterPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                    ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Pigeonhole<void>; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2795:64:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  2795 |                 std::cout << "  stepsize: " << getStepSize(host(filterPattern)) << std::endl;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                                            ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:398:24:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  277 |         class Pattern<TIndex, Pigeonhole<TSpec> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >& seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >&)’ first required here
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:865:24:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   472 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  277 |         class Pattern<TIndex, Pigeonhole<TSpec> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >& seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >&)’ first required here
  116 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  117 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  118 |         TMatches_,
      |         ~~~~~~~~~~
  119 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  120 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  121 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  122 |         TShape,
      |         ~~~~~~~
  123 |         TOptions,
      |         ~~~~~~~~~
  124 |         TCounts,
      |         ~~~~~~~~
  125 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2948:40:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2948 |     TReadSet & readSet = indexText(host(filterPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                    ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  497 |     class Pattern<TIndex, Swift<TSpec> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >& seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >&)’ first required here
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   472 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  497 |     class Pattern<TIndex, Swift<TSpec> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >& seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >&)’ first required here
  116 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  117 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  118 |         TMatches_,
      |         ~~~~~~~~~~
  119 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  120 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  121 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  122 |         TShape,
      |         ~~~~~~~
  123 |         TOptions,
      |         ~~~~~~~~~
  124 |         TCounts,
      |         ~~~~~~~~
  125 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  277 |         class Pattern<TIndex, Pigeonhole<TSpec> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >& seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >&)’ first required here
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   472 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  277 |         class Pattern<TIndex, Pigeonhole<TSpec> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >& seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >&)’ first required here
  116 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  117 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  118 |         TMatches_,
      |         ~~~~~~~~~~
  119 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  120 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  121 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  122 |         TShape,
      |         ~~~~~~~
  123 |         TOptions,
      |         ~~~~~~~~~
  124 |         TCounts,
      |         ~~~~~~~~
  125 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  497 |     class Pattern<TIndex, Swift<TSpec> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >& seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >&)’ first required here
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   472 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  497 |     class Pattern<TIndex, Swift<TSpec> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >& seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >&)’ first required here
  116 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  117 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  118 |         TMatches_,
      |         ~~~~~~~~~~
  119 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  120 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  121 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  122 |         TShape,
      |         ~~~~~~~
  123 |         TOptions,
      |         ~~~~~~~~~
  124 |         TCounts,
      |         ~~~~~~~~
  125 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   472 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  116 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  117 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  118 |         TMatches_,
      |         ~~~~~~~~~~
  119 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  120 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  121 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  122 |         TShape,
      |         ~~~~~~~
  123 |         TOptions,
      |         ~~~~~~~~~
  124 |         TCounts,
      |         ~~~~~~~~
  125 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   472 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  116 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  117 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  118 |         TMatches_,
      |         ~~~~~~~~~~
  119 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  120 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  121 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  122 |         TShape,
      |         ~~~~~~~
  123 |         TOptions,
      |         ~~~~~~~~~
  124 |         TCounts,
      |         ~~~~~~~~
  125 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   472 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  116 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  117 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  118 |         TMatches_,
      |         ~~~~~~~~~~
  119 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  120 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  121 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  122 |         TShape,
      |         ~~~~~~~
  123 |         TOptions,
      |         ~~~~~~~~~
  124 |         TCounts,
      |         ~~~~~~~~
  125 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<long unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   472 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  116 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  117 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  118 |         TMatches_,
      |         ~~~~~~~~~~
  119 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  120 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  121 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  122 |         TShape,
      |         ~~~~~~~
  123 |         TOptions,
      |         ~~~~~~~~~
  124 |         TCounts,
      |         ~~~~~~~~
  125 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, ErrorAlphabet_>*; TSource1 = SimpleType<unsigned char, ErrorAlphabet_>*; TSource2 = SimpleType<unsigned char, ErrorAlphabet_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:838:30:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   838 |             if (!chooseParams(options, pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<long unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11:   required from ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   497 |     class Pattern<TIndex, Swift<TSpec> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:8:   required from ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   277 |         class Pattern<TIndex, Pigeonhole<TSpec> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11:   required from ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   497 |     class Pattern<TIndex, Swift<TSpec> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:8:   required from ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   277 |         class Pattern<TIndex, Pigeonhole<TSpec> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11:   required from ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   497 |     class Pattern<TIndex, Swift<TSpec> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11:   required from ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   497 |     class Pattern<TIndex, Swift<TSpec> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<long unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:38:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:51:
In static member function ‘static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]’,
    inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:507:30,
    inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:534:42,
    inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:541:31,
    inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:637:7,
    inlined from ‘void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:855:16,
    inlined from ‘void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:865:29,
    inlined from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21,
    inlined from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31,
    inlined from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSource = const char; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1368:31,
    inlined from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42,
    inlined from ‘void seqan::append(TTarget&, TSource&) [with TTarget = String<char, Alloc<> >; TSource = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11,
    inlined from ‘seqan::String<char, seqan::Alloc<> > seqan::_parseReadFilepath(TFile&, TChar&) [with TFile = std::basic_fstream<char>; TChar = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_parsing.h:338:9,
    inlined from ‘int seqan::getGenomeFileNameList(CharString, StringSet<String<char, Alloc<> > >&, RazerSOptions<TSpec>&) [with TSpec = RazerSSpec<>]’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:630:60:
/usr/include/c++/14/bits/stl_algobase.h:438:30: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’ forming offset 1 is out of the bounds [0, 1] of object ‘c’ with type ‘char’ [-Warray-bounds=]
  438 |             __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
      |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In function ‘int seqan::getGenomeFileNameList(CharString, StringSet<String<char, Alloc<> > >&, RazerSOptions<TSpec>&) [with TSpec = RazerSSpec<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:613:10: note: ‘c’ declared here
  613 |     char c = _streamGet(file);
      |          ^
In static member function ‘static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const char; _Up = char; bool _IsMove = false]’,
    inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:507:30,
    inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:534:42,
    inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:541:31,
    inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = const char*; _OI = char*]’ at /usr/include/c++/14/bits/stl_algobase.h:637:7,
    inlined from ‘void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:855:16,
    inlined from ‘void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = char*; TSource1 = const char*; TSource2 = const char*]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:865:29,
    inlined from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const char; TValueTarget = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21,
    inlined from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const char; TValueTarget = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31,
    inlined from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSource = const char; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1368:31,
    inlined from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = char; TTargetSpec = Alloc<>; TSource = char; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42,
    inlined from ‘void seqan::append(TTarget&, TSource&) [with TTarget = String<char, Alloc<> >; TSource = char]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11,
    inlined from ‘void seqan::_parse_readShape(TFile&, TChar&, CharString&) [with TFile = std::basic_fstream<char>; TChar = char]’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:861:15,
    inlined from ‘bool seqan::parseGappedParams(RazerSOptions<TSpec>&, TFile&, ParamChooserOptions&) [with TFile = std::basic_fstream<char>; TSpec = RazerSSpec<>]’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1068:25,
    inlined from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1342:26:
/usr/include/c++/14/bits/stl_algobase.h:438:30: warning: ‘void* __builtin_memmove(void*, const void*, long unsigned int)’ forming offset 1 is out of the bounds [0, 1] of object ‘c’ with type ‘char’ [-Warray-bounds=]
  438 |             __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
      |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:76:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h: In function ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1043:10: note: ‘c’ declared here
 1043 |     char c = _streamGet(file);
      |          ^
[ 72%] Building CXX object extras/apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o -MF CMakeFiles/razers3.dir/param_tabs.cpp.o.d -o CMakeFiles/razers3.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/param_tabs.cpp
[ 72%] Linking CXX executable ../../../bin/razers3
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers3.dir/razers.cpp.o CMakeFiles/razers3.dir/param_tabs.cpp.o -o ../../../bin/razers3  -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 72%] Built target razers3
make  -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 74%] Building CXX object extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -MF CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o.d -o CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:39,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:5:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:1:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, Dna5Q_> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, Dna5Q_> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:1302:14:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const StringSet<String<char, Alloc<> > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1302 |                                 assignSeq(store.contigStore[seqOfs + i].seq, multiSeqFile[i], contigFile.format);       // read Genome sequence
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:1323:20:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1323 |         return loadContigs(store, fileNames, loadSeqs);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:1331:20:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TFileNames = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1331 |         return loadContigs(store, fileNames, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:114:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   114 |     if (!loadContigs(store, getArgumentValue(parser, 0)) && (stop = true))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |          ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 74%] Linking CXX executable ../../../bin/razers3_simulate_reads
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_simulate_reads.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -o ../../../bin/razers3_simulate_reads  -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 74%] Built target razers3_simulate_reads
make  -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 75%] Building CXX object extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -MF CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o.d -o CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:39,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:5:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:1:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:7:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:845:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  845 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:862:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  862 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:896:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  896 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:934:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  934 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:968:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  968 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1009:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1009 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1046:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1046 |     public std::binary_function<TReadMatch, TReadMatch, int>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1087:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1087 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1130:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1130 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1174:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1174 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1218:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1218 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; typename Size<T>::Type = long unsigned int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:724:19:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TRazerSOptions = RazerSOptions<>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   724 |             resize(seq, options.trimLength);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:39:19:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    39 |     if (!loadReads(store, toCString(getArgumentValue(parser, 0)), options) && (stop = true))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = long int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:835:14:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |     assignSeq(firstRead, multiFasta[0], format);            // read the first sequence
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1415:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(FragmentStore<TSpec, TConfig>&, const TRead&, const CharString&, TId) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; TId = unsigned int; typename Size<typename FragmentStore<TSpec, TConfig>::TReadStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TReadStore = String<ReadStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1415 |         appendValue(me.readSeqStore, read, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1442:19:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(FragmentStore<TSpec, TConfig>&, const TRead&, const CharString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; typename Size<typename FragmentStore<TSpec, TConfig>::TReadStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TReadStore = String<ReadStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1442 |         return appendRead(me, read, name, TReadStoreElement::INVALID_ID);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:727:19:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   727 |         appendRead(store, seq, seqId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:39:19:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:    39 |     if (!loadReads(store, toCString(getArgumentValue(parser, 0)), options) && (stop = true))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1415:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(FragmentStore<TSpec, TConfig>&, const TRead&, const CharString&, TId) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; TId = unsigned int; typename Size<typename FragmentStore<TSpec, TConfig>::TReadStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TReadStore = String<ReadStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1415 |         appendValue(me.readSeqStore, read, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1442:19:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(FragmentStore<TSpec, TConfig>&, const TRead&, const CharString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; typename Size<typename FragmentStore<TSpec, TConfig>::TReadStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TReadStore = String<ReadStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1442 |         return appendRead(me, read, name, TReadStoreElement::INVALID_ID);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:727:19:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   727 |         appendRead(store, seq, seqId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:39:19:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:    39 |     if (!loadReads(store, toCString(getArgumentValue(parser, 0)), options) && (stop = true))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:38:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 75%] Linking CXX executable ../../../bin/razers3_quality2prob
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_quality2prob.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -o ../../../bin/razers3_quality2prob  -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 75%] Built target razers3_quality2prob
make  -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 75%] Building CXX object extras/apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o -MF CMakeFiles/rep_sep.dir/rep_sep.cpp.o.d -o CMakeFiles/rep_sep.dir/rep_sep.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:27:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:22:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = GraphCargo<Triple<char, unsigned int, long unsigned int>, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, long unsigned int>; TSource = GraphCargo<Triple<char, unsigned int, long unsigned int>, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, long unsigned int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1242:11:   required from ‘void seqan::assignValue(T&, TPos, const TValue&) [with T = String<GraphCargo<Triple<char, unsigned int, long unsigned int>, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, long unsigned int>, Alloc<> >; TValue = GraphCargo<Triple<char, unsigned int, long unsigned int>, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, long unsigned int>; TPos = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1242 |     assign(value(me, pos), _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_property.h:178:13:   required from ‘void seqan::assignProperty(TPropertyMap&, TDescriptor, TValue) [with TPropertyMap = String<GraphCargo<Triple<char, unsigned int, long unsigned int>, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, long unsigned int>, Alloc<> >; TDescriptor = unsigned int; TValue = GraphCargo<Triple<char, unsigned int, long unsigned int>, AlignedReadStoreElement<long int, GapAnchor<long int>, void>, long unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   178 |         assignValue(pm, _getId(d), val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:191:23:   required from ‘GraphCargo<TColumnAlphabet, TAlignedReadStoreElement, TPosition>& registerRead(ReadGraph<TColumnAlphabet, TAlignedReadStoreElement, TPosition>&, typename ReadGraph<TColumnAlphabet, TAlignedReadStoreElement, TPosition>::TId) [with TColumnAlphabet = seqan::Triple<char, unsigned int, long unsigned int>; TAlignedReadStoreElement = seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>; TPosition = long unsigned int; typename ReadGraph<TColumnAlphabet, TAlignedReadStoreElement, TPosition>::TId = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   191 |         assignProperty(me.vertexCargo, vd, new_cargo);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_construction.h:82:59:   required from ‘void construct(ReadGraph<TColumnAlphabet, TAlignedReadStoreElement, TPosition>&, const seqan::String<seqan::Pair<TPosition, seqan::String<TString> > >&, const seqan::FragmentStore<TSpec, TConfig>&, TId) [with TColumnAlphabet = seqan::Triple<char, unsigned int, long unsigned int>; TAlignedReadStoreElement = seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>; TPosition = long unsigned int; TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TId = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:    82 |                     TGraphCargo & new_cargo = registerRead(me, _readId(value(colIter)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                               ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:212:14:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   212 |     construct(rgraph, candidates, fragStore, options.contig);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘GraphCargo<seqan::Triple<char, unsigned int, long unsigned int>, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, long unsigned int>& GraphCargo<seqan::Triple<char, unsigned int, long unsigned int>, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, long unsigned int>::operator=(const GraphCargo<seqan::Triple<char, unsigned int, long unsigned int>, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, long unsigned int>&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph.h:32,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:34:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note: because ‘GraphCargo<seqan::Triple<char, unsigned int, long unsigned int>, seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>, long unsigned int>’ has user-provided ‘GraphCargo<TColumnAlphabet, TAlignedReadStoreElement, TPosition>::GraphCargo(const GraphCargo<TColumnAlphabet, TAlignedReadStoreElement, TPosition>&) [with TColumnAlphabet = seqan::Triple<char, unsigned int, long unsigned int>; TAlignedReadStoreElement = seqan::AlignedReadStoreElement<long int, seqan::GapAnchor<long int>, void>; TPosition = long unsigned int]’
   44 |     GraphCargo(GraphCargo const& other)
      |     ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/assembly_parser.h:186:27:   required from ‘void parseContig(const seqan::FragmentStore<TSpec, TConfig>&, TId, seqan::String<TEmission>&, TScannerType) [with TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TId = int; TAnnotatedCandidateColumn = seqan::Pair<long unsigned int, seqan::String<seqan::Triple<char, unsigned int, long unsigned int> > >; TScannerType = SimpleColumn]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:   186 |             String<Dna5Q> ungapped_seq = fragStore.readSeqStore[iter_cr->readId];
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:       |                           ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:198:16:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:   198 |     parseContig(fragStore, options.contig, candidates, algoSpec);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(FragmentStore<TSpec, TConfig>&, const TRead&, TId) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; TId = unsigned int; typename Size<typename FragmentStore<TSpec, TConfig>::TReadStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TReadStore = String<ReadStoreElement<void>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1396 |         appendValue(me.readSeqStore, read, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:452:15:   required from ‘int seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   452 |                                 appendRead(fragStore, seq, matePairId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:155:9:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   155 |     read(strmReads, fragStore, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(FragmentStore<TSpec, TConfig>&, const TRead&, TId) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; TId = unsigned int; typename Size<typename FragmentStore<TSpec, TConfig>::TReadStore>::Type = long unsigned int; typename FragmentStore<TSpec, TConfig>::TReadStore = String<ReadStoreElement<void>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1396 |         appendValue(me.readSeqStore, read, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:452:15:   required from ‘int seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   452 |                                 appendRead(fragStore, seq, matePairId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:155:9:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   155 |     read(strmReads, fragStore, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Triple<char, unsigned int, long unsigned int>; TSource = Triple<char, unsigned int, long unsigned int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:268:11:   required from ‘void seqan::move(TTarget&, TSource&) [with TTarget = Triple<char, unsigned int, long unsigned int>; TSource = Triple<char, unsigned int, long unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   268 |     assign(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1056:13:   required from ‘void seqan::_arrayMoveForwardDefault(TSource1, TSource2, TTarget) [with TTarget = Triple<char, unsigned int, long unsigned int>*; TSource1 = Triple<char, unsigned int, long unsigned int>*; TSource2 = Triple<char, unsigned int, long unsigned int>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1056 |         move(*target_begin, *source_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1600:29:   required from ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, False) [with TValue = Triple<char, unsigned int, long unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1600 |     _arrayMoveForwardDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = Triple<char, unsigned int, long unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1211:25:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = Triple<char, unsigned int, long unsigned int>*; TSource1 = Triple<char, unsigned int, long unsigned int>*; TSource2 = Triple<char, unsigned int, long unsigned int>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1211 |         arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1295:22:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = Triple<char, unsigned int, long unsigned int>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::Triple<char, unsigned int, long unsigned int> >; TSource = const seqan::Triple<char, unsigned int, long unsigned int>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = Triple<char, unsigned int, long unsigned int>; TTargetSpec = Alloc<>; TSource = Triple<char, unsigned int, long unsigned int>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<Triple<char, unsigned int, long unsigned int> >; TSource = Triple<char, unsigned int, long unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/assembly_parser.h:197:19:   required from ‘void parseContig(const seqan::FragmentStore<TSpec, TConfig>&, TId, seqan::String<TEmission>&, TScannerType) [with TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TId = int; TAnnotatedCandidateColumn = seqan::Pair<long unsigned int, seqan::String<seqan::Triple<char, unsigned int, long unsigned int> > >; TScannerType = SimpleColumn]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   197 |             append(column, TAssignedReadChar(_sequenceCharacter(gapped_read[p - offset]), iter_cr->readId, _positionInRead(gapped_read[p - offset])));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:198:16:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   198 |     parseContig(fragStore, options.contig, candidates, algoSpec);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘constexpr seqan::Triple<char, unsigned int, long unsigned int>& seqan::Triple<char, unsigned int, long unsigned int>::operator=(const seqan::Triple<char, unsigned int, long unsigned int>&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because ‘seqan::Triple<char, unsigned int, long unsigned int>’ has user-provided ‘seqan::Triple<T1, T2, T3, TSpec>::Triple(const seqan::Triple<T1, T2, T3, TSpec>&) [with T1 = char; T2 = unsigned int; T3 = long unsigned int; TSpec = void]’
  162 |     inline Triple(Triple const & _p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 77%] Linking CXX executable ../../../bin/rep_sep
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep && /usr/bin/cmake -E cmake_link_script CMakeFiles/rep_sep.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rep_sep.dir/rep_sep.cpp.o -o ../../../bin/rep_sep  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 77%] Built target rep_sep
make  -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/search.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 77%] Building CXX object extras/apps/searchjoin/CMakeFiles/search.dir/search.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/searchjoin/CMakeFiles/search.dir/search.cpp.o -MF CMakeFiles/search.dir/search.cpp.o.d -o CMakeFiles/search.dir/search.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:53:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:280:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   280 |     index(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<HugeDb_>; TDbSpec = seqan::Tag<Query_>; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:321:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   321 |     prepare(searcher, query);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  902 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:280:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   280 |     index(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<SmallDb_>; TDbSpec = seqan::Tag<Query_>; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:321:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   321 |     prepare(searcher, query);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  902 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:403:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   403 |     index(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<HugeDb_>; TDbSpec = seqan::Tag<Query_>; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:447:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   447 |     prepare(searcher, queryLong);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  902 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:403:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   403 |     index(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<SmallDb_>; TDbSpec = seqan::Tag<Query_>; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:447:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   447 |     prepare(searcher, queryLong);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  902 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24:   required from ‘void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TStepSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:  1639 |                 _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, stepSize, False());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21:   required from ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   804 |     createQGramIndex(sa, dir, nothing, text, shape, stepSize);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:280:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   280 |     index(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:103:8: warning: implicitly-declared ‘constexpr seqan::VertexEsa<long unsigned int>& seqan::VertexEsa<long unsigned int>::operator=(const seqan::VertexEsa<long unsigned int>&)’ is deprecated [-Wdeprecated-copy]
  103 | struct VertexSA : public VertexEsa<TSize>
      |        ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:290:17: note: because ‘seqan::VertexEsa<long unsigned int>’ has user-provided ‘seqan::VertexEsa<TSize>::VertexEsa(const seqan::VertexEsa<TSize>&) [with TSize = long unsigned int]’
  290 |                 VertexEsa(VertexEsa const &other):
      |                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note: synthesized method ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ first required here
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24:   required from ‘void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TStepSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  1639 |                 _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, stepSize, False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21:   required from ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:   804 |     createQGramIndex(sa, dir, nothing, text, shape, stepSize);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:280:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:   280 |     index(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<char, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24:   required from ‘void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TShape = Shape<char, UngappedShape<0> >; TStepSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1639 |                 _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, stepSize, False());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21:   required from ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   804 |     createQGramIndex(sa, dir, nothing, text, shape, stepSize);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:403:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   403 |     index(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<char, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24:   required from ‘void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TShape = Shape<char, UngappedShape<0> >; TStepSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1639 |                 _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, stepSize, False());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21:   required from ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   804 |     createQGramIndex(sa, dir, nothing, text, shape, stepSize);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:403:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   403 |     index(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:47:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   802 |             dbFinder.verifier(dbId, queryId, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   506 |             return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘bool seqan::_moveIteratorsRight(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<Tag<HammingDistance_>, TSpec> >&, const StageExact_&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TSpec = Tag<Top_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:587:28:   required from ‘bool seqan::_nextState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageExact_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   587 |     if (_moveIteratorsRight(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1277:38:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageExact_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1277 |                     while (_nextState(finder, TStage()));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1254:14:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1254 |         _find(finder, delegate, StageExact_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  244 |         class Iter< TIndex, VSTree< TopDown<TSpec> > >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  244 |         class Iter< TIndex, VSTree< TopDown<TSpec> > >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:65:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note: synthesized method ‘seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<> > >& seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<> > >::operator=(const seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<> > >&)’ first required here
  651 |         back(finder.textStack) = finder.textStack[length(finder.textStack) - 2];
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘bool seqan::_moveIteratorsRight(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<Tag<HammingDistance_>, TSpec> >&, const StageExact_&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TSpec = Tag<Top_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:587:28:   required from ‘bool seqan::_nextState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageExact_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   587 |     if (_moveIteratorsRight(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1277:38:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageExact_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1277 |                     while (_nextState(finder, TStage()));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1254:14:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1254 |         _find(finder, delegate, StageExact_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  244 |         class Iter< TIndex, VSTree< TopDown<TSpec> > >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  244 |         class Iter< TIndex, VSTree< TopDown<TSpec> > >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note: synthesized method ‘seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<> > >& seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<> > >::operator=(const seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<> > >&)’ first required here
  651 |         back(finder.textStack) = finder.textStack[length(finder.textStack) - 2];
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:47:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   802 |             dbFinder.verifier(dbId, queryId, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:530:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   530 |             return runSearcher(options, TDbGeo(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                                                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   802 |             dbFinder.verifier(dbId, queryId, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   506 |             return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   802 |             dbFinder.verifier(dbId, queryId, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:530:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   530 |             return runSearcher(options, TDbGeo(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                                                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   802 |             dbFinder.verifier(dbId, queryId, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   506 |             return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   802 |             dbFinder.verifier(dbId, queryId, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:530:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   530 |             return runSearcher(options, TDbGeo(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<Tag<StringOfMaxSize256_> >; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TValue = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16:   required from ‘bool _parseText(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   461 |     appendValue(parser.db.text, parser._text);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50:   required from ‘bool parseLine(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   394 |     return _parseId(parser, reader) && _parseText(parser, reader);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                        ~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23:   required from ‘bool load(Db<TText, TSpec>&, const TFileName&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TFileName = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   534 |         if (!parseLine(parser, reader))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |              ~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:249:14:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   249 |     if (!load(db, options.databaseFile))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   506 |             return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairIncrementer_<TPair, TLimits>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimits = String<unsigned int, Alloc<> >; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   382 |                 setHost(p, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1032 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::pop(Pipe<TInput, TSpec>&, TValue&) [with TInput = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe<Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   386 |                                         _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~^
     387 |                                                 renamer, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~
     388 |                                                 names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |         Ref_ = *me;
      |         ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairIncrementer_<TPair, TLimits>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimits = String<unsigned int, Alloc<> >; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   382 |                 setHost(p, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1032 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TValue = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16:   required from ‘bool _parseText(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   461 |     appendValue(parser.db.text, parser._text);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50:   required from ‘bool parseLine(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   394 |     return _parseId(parser, reader) && _parseText(parser, reader);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                        ~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23:   required from ‘bool load(Db<TText, TSpec>&, const TFileName&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TFileName = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   534 |         if (!parseLine(parser, reader))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |              ~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:249:14:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   249 |     if (!load(db, options.databaseFile))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   506 |             return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<Tag<StringOfMaxSize256_> >; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<Tag<StringOfMaxSize256_> >; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >; TValue2 = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:797:45:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   797 |     TDbQuerySSize dbQuerySize = length(value(dbFinder.query).text);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   506 |             return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  599 |             tmp.i1 = localPos;
      |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   324 |             TNames_Sliced               names_sliced;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop(TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24:   required from ‘void seqan::Pool<TValue, TSpec>::pop(TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   925 |             reader->pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15:   required from ‘void seqan::pop(Pool<TValue, TPoolSpec>&, TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1159 |         me.pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  926 |             Ref_ = *cur;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   243 |     struct Pipe< TInput, Skew7 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  599 |             tmp.i1 = localPos;
      |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  497 |                                 tmpRef->i1 = localPos;
      |                                 ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  497 |                                 tmpRef->i1 = localPos;
      |                                 ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   341 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   352 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   161 |             if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   162 |             if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   179 |             if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   190 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   173 |     struct Pipe< TInput, Skew3 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairDecrementer_<TPair, TLimits, m>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimits = String<unsigned int, Alloc<> >; unsigned int m = 7; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |                         setHost(localPos, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1119 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  557 |                         tmp.i1 = localPos;
      |                         ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TSpec = Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of ‘TResult seqan::_skew7NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairDecrementer_<TPair, TLimits, m>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimits = String<unsigned int, Alloc<> >; unsigned int m = 7; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                         setHost(localPos, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1119 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   544 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  557 |                         tmp.i1 = localPos;
      |                         ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   426 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; unsigned int m = 7; TPack = Tag<Pack_>; TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  438 |             tmpRef->i1 = localPos;
      |             ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   426 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; unsigned int m = 7; TPack = Tag<Pack_>; TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  438 |             tmpRef->i1 = localPos;
      |             ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   148 | /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn).i2; ++nameIn; o4.i1 = p--;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                        ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   247 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   259 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   123 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27:   required from ‘bool seqan::CompareSkewDCStream<TValue>::operator()(const seqan::SkewDCStream<TValue>&, const seqan::SkewDCStream<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   124 |                 if (a.i.i3[i] < b.i.i3[i]) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   307 |                                 if (!streamGreater(inValue[stream],inValue[rank[right]])) break;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   319 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13:   required from ‘seqan::Pipe<TInput, seqan::Skew7>& seqan::Pipe<TInput, seqan::Skew7>::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   440 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13:   required from ‘seqan::Pipe<TInput, seqan::Counter>& seqan::Pipe<TInput, seqan::Counter>::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >, seqan::Skew7>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   105 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TSpec = Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of ‘TResult seqan::_skew3NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TFunctor = seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    86 |             o2.i2[0] = (*nameIn).i2; ++nameIn;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   301 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17:   required from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   111 |                 ++in.in2;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 3; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 1; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 2; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=]
  142 | /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p--;
      |                                                                                                               ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here
  144 |         case 5:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=]
  145 | /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p--;
      |                                                                                                                ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here
  147 |         case 4:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=]
  149 |                                                      cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                       ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here
  151 |         case 3:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=]
  152 | /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p--;
      |                                                                                                                 ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here
  154 |         case 2:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=]
  156 |                                cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here
  158 |         case 1:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >, Alloc<> >; TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >, Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >; TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >, Alloc<> >; TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >, Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >; TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >, Alloc<> >; TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >, Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >; TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >, Alloc<> >; TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >, Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >; TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, _skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, _skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, _skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, _skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:279:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:289:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, _skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, _skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, _skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 79%] Linking CXX executable ../../../bin/search
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/search.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/search.dir/search.cpp.o -o ../../../bin/search  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 79%] Built target search
make  -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/join.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 80%] Building CXX object extras/apps/searchjoin/CMakeFiles/join.dir/join.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/searchjoin/CMakeFiles/join.dir/join.cpp.o -MF CMakeFiles/join.dir/join.cpp.o.d -o CMakeFiles/join.dir/join.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:53:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   347 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:316:37:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   316 |                     return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<HugeDb_>; TDbSpec = void; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:277:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   277 |     prepare(joiner, db);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  902 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   347 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:328:37:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   328 |                     return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<SmallDb_>; TDbSpec = void; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:277:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   277 |     prepare(joiner, db);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  902 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   347 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:350:37:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   350 |                     return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<HugeDb_>; TDbSpec = void; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:277:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   277 |     prepare(joiner, db);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  902 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   347 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:362:37:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   362 |                     return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<SmallDb_>; TDbSpec = void; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:277:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   277 |     prepare(joiner, db);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  902 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24:   required from ‘void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TStepSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:  1639 |                 _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, stepSize, False());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21:   required from ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   804 |     createQGramIndex(sa, dir, nothing, text, shape, stepSize);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   347 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:316:37:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   316 |                     return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:103:8: warning: implicitly-declared ‘constexpr seqan::VertexEsa<long unsigned int>& seqan::VertexEsa<long unsigned int>::operator=(const seqan::VertexEsa<long unsigned int>&)’ is deprecated [-Wdeprecated-copy]
  103 | struct VertexSA : public VertexEsa<TSize>
      |        ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:290:17: note: because ‘seqan::VertexEsa<long unsigned int>’ has user-provided ‘seqan::VertexEsa<TSize>::VertexEsa(const seqan::VertexEsa<TSize>&) [with TSize = long unsigned int]’
  290 |                 VertexEsa(VertexEsa const &other):
      |                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note: synthesized method ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ first required here
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24:   required from ‘void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TStepSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  1639 |                 _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, stepSize, False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21:   required from ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:   804 |     createQGramIndex(sa, dir, nothing, text, shape, stepSize);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:   347 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:328:37:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:   328 |                     return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<char, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24:   required from ‘void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TShape = Shape<char, UngappedShape<0> >; TStepSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1639 |                 _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, stepSize, False());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21:   required from ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   804 |     createQGramIndex(sa, dir, nothing, text, shape, stepSize);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   347 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:350:37:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   350 |                     return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<char, UngappedShape<0> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24:   required from ‘void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TDir = String<long unsigned int, Alloc<> >; TBucketMap = Nothing; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TShape = Shape<char, UngappedShape<0> >; TStepSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1639 |                 _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, stepSize, False());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21:   required from ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   804 |     createQGramIndex(sa, dir, nothing, text, shape, stepSize);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   347 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:362:37:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   362 |                     return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:47:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   783 |             dbFinder.verifier(dbId1, dbId2, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   309 |             return runJoiner(options, TDbDna(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘bool seqan::_moveIteratorsRight(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<Tag<HammingDistance_>, TSpec> >&, const StageExact_&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TSpec = Tag<Top_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:587:28:   required from ‘bool seqan::_nextState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageExact_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   587 |     if (_moveIteratorsRight(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1277:38:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageExact_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1277 |                     while (_nextState(finder, TStage()));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1254:14:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1254 |         _find(finder, delegate, StageExact_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  244 |         class Iter< TIndex, VSTree< TopDown<TSpec> > >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  244 |         class Iter< TIndex, VSTree< TopDown<TSpec> > >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:65:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note: synthesized method ‘seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<> > >& seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<> > >::operator=(const seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<> > >&)’ first required here
  651 |         back(finder.textStack) = finder.textStack[length(finder.textStack) - 2];
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘bool seqan::_moveIteratorsRight(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<Tag<HammingDistance_>, TSpec> >&, const StageExact_&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TSpec = Tag<Top_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:587:28:   required from ‘bool seqan::_nextState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageExact_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   587 |     if (_moveIteratorsRight(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1277:38:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageExact_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1277 |                     while (_nextState(finder, TStage()));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1254:14:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1254 |         _find(finder, delegate, StageExact_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  244 |         class Iter< TIndex, VSTree< TopDown<TSpec> > >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  244 |         class Iter< TIndex, VSTree< TopDown<TSpec> > >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note: synthesized method ‘seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<> > >& seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<> > >::operator=(const seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<> > >&)’ first required here
  651 |         back(finder.textStack) = finder.textStack[length(finder.textStack) - 2];
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:47:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   783 |             dbFinder.verifier(dbId1, dbId2, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:343:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   343 |             return runJoiner(options, TDbGeo(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                                                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   783 |             dbFinder.verifier(dbId1, dbId2, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   309 |             return runJoiner(options, TDbDna(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   783 |             dbFinder.verifier(dbId1, dbId2, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:343:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   343 |             return runJoiner(options, TDbGeo(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, void, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, void, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, void, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, void, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<long unsigned int, char>& seqan::VertexSA<long unsigned int, char>::operator=(const seqan::VertexSA<long unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<long unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = long unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                                                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   783 |             dbFinder.verifier(dbId1, dbId2, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   309 |             return runJoiner(options, TDbDna(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   783 |             dbFinder.verifier(dbId1, dbId2, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:343:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   343 |             return runJoiner(options, TDbGeo(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<Tag<StringOfMaxSize256_> >; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TValue = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16:   required from ‘bool _parseText(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   461 |     appendValue(parser.db.text, parser._text);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50:   required from ‘bool parseLine(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   394 |     return _parseId(parser, reader) && _parseText(parser, reader);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                        ~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23:   required from ‘bool load(Db<TText, TSpec>&, const TFileName&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TFileName = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   534 |         if (!parseLine(parser, reader))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |              ~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:231:14:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   231 |     if (!load(db, options.databaseFile))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   309 |             return runJoiner(options, TDbDna(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairIncrementer_<TPair, TLimits>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimits = String<unsigned int, Alloc<> >; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   382 |                 setHost(p, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1032 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::pop(Pipe<TInput, TSpec>&, TValue&) [with TInput = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe<Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   386 |                                         _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~^
     387 |                                                 renamer, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~
     388 |                                                 names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |         Ref_ = *me;
      |         ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairIncrementer_<TPair, TLimits>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimits = String<unsigned int, Alloc<> >; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   382 |                 setHost(p, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1032 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TValue = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16:   required from ‘bool _parseText(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   461 |     appendValue(parser.db.text, parser._text);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50:   required from ‘bool parseLine(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   394 |     return _parseId(parser, reader) && _parseText(parser, reader);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                        ~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23:   required from ‘bool load(Db<TText, TSpec>&, const TFileName&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TFileName = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   534 |         if (!parseLine(parser, reader))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |              ~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:231:14:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   231 |     if (!load(db, options.databaseFile))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   309 |             return runJoiner(options, TDbDna(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<Tag<StringOfMaxSize256_> >; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<Tag<StringOfMaxSize256_> >; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>; TValue2 = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:778:40:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   778 |     TDbSSize dbQuerySize = length(value(dbFinder.query).text);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                   ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   309 |             return runJoiner(options, TDbDna(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  599 |             tmp.i1 = localPos;
      |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   324 |             TNames_Sliced               names_sliced;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop(TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24:   required from ‘void seqan::Pool<TValue, TSpec>::pop(TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   925 |             reader->pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15:   required from ‘void seqan::pop(Pool<TValue, TPoolSpec>&, TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1159 |         me.pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  926 |             Ref_ = *cur;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   243 |     struct Pipe< TInput, Skew7 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  599 |             tmp.i1 = localPos;
      |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  497 |                                 tmpRef->i1 = localPos;
      |                                 ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  497 |                                 tmpRef->i1 = localPos;
      |                                 ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   341 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   352 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   161 |             if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   162 |             if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   179 |             if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   190 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   173 |     struct Pipe< TInput, Skew3 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairDecrementer_<TPair, TLimits, m>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimits = String<unsigned int, Alloc<> >; unsigned int m = 7; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |                         setHost(localPos, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1119 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  557 |                         tmp.i1 = localPos;
      |                         ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TSpec = Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of ‘TResult seqan::_skew7NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairDecrementer_<TPair, TLimits, m>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimits = String<unsigned int, Alloc<> >; unsigned int m = 7; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                         setHost(localPos, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1119 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   544 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  557 |                         tmp.i1 = localPos;
      |                         ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   426 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; unsigned int m = 7; TPack = Tag<Pack_>; TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  438 |             tmpRef->i1 = localPos;
      |             ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   426 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; unsigned int m = 7; TPack = Tag<Pack_>; TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  438 |             tmpRef->i1 = localPos;
      |             ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   148 | /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn).i2; ++nameIn; o4.i1 = p--;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                        ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   247 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   259 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   123 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27:   required from ‘bool seqan::CompareSkewDCStream<TValue>::operator()(const seqan::SkewDCStream<TValue>&, const seqan::SkewDCStream<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   124 |                 if (a.i.i3[i] < b.i.i3[i]) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   307 |                                 if (!streamGreater(inValue[stream],inValue[rank[right]])) break;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   319 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13:   required from ‘seqan::Pipe<TInput, seqan::Skew7>& seqan::Pipe<TInput, seqan::Skew7>::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   440 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13:   required from ‘seqan::Pipe<TInput, seqan::Counter>& seqan::Pipe<TInput, seqan::Counter>::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >, seqan::Skew7>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   105 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TSpec = Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of ‘TResult seqan::_skew3NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TFunctor = seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    86 |             o2.i2[0] = (*nameIn).i2; ++nameIn;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   301 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17:   required from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   111 |                 ++in.in2;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 3; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 1; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 2; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=]
  142 | /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p--;
      |                                                                                                               ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here
  144 |         case 5:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=]
  145 | /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p--;
      |                                                                                                                ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here
  147 |         case 4:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=]
  149 |                                                      cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                       ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here
  151 |         case 3:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=]
  152 | /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p--;
      |                                                                                                                 ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here
  154 |         case 2:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=]
  156 |                                cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here
  158 |         case 1:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >, Alloc<> >; TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >, Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >; TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >, Alloc<> >; TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >, Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >; TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >, Alloc<> >; TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<> > >, Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >; TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >, Alloc<> >; TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<> > >, Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >; TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<seqan::Truncated<seqan::Preorder> > > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551424’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘void seqan::eraseBack(T&) [with T = String<Iter<Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, VSTree<TopDown<Truncated<Preorder> > > >, Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, _skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, _skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, _skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, _skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:423:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:432:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:279:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:289:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, _skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, _skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, _skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13,
    inlined from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13,
    inlined from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42,
    inlined from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1385:17,
    inlined from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22,
    inlined from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In function ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 80%] Linking CXX executable ../../../bin/join
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/join.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/join.dir/join.cpp.o -o ../../../bin/join  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 80%] Built target join
make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 82%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o -MF CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o.d -o CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/refwrap.h:39,
                 from /usr/include/c++/14/deque:67,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:41:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:50:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:67:8:   required from ‘void findAllExactIndex(seqan::String<int>&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:    67 |         class Finder< Index<TText, TSpec>, TSpecFinder >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:322:22:   required from ‘void SEQAN_TEST_findAllExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   322 |     findAllExactIndex(res, readPieces, esaFinder, demultiplexStats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:552:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >’ has user-provided ‘seqan::Index<TText, seqan::IndexEsa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexEsa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TSpec = void]’
  548 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:67:8:   required from ‘void findAllExactIndex(seqan::String<int>&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:    67 |         class Finder< Index<TText, TSpec>, TSpecFinder >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19:   required from ‘void doAll(seqan::StringSet<seqan::String<int> >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TMultiplex = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   458 |         findAllExactIndex(matches, multiplex, esaFinder, stats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:501:10:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   501 |     doAll(res, multiplex, barcodes, esaFinder, demultiplexStats, false);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >’ has user-provided ‘seqan::Index<TText, seqan::IndexEsa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexEsa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TSpec = void]’
  548 |                 Index(Index const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:177:13:   required from ‘void SEQAN_TEST_buildVariations_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   177 |         Dna5String barcode = "ACTNG";
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                    ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:549:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:116:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h: In instantiation of ‘void seqan::posLocalize(TResult&, const Pair<R1, R2, RPack>&, const String<TRightValue, TRightSpec>&) [with TResult = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSize = long unsigned int; TSpec = Alloc<>; T1 = long unsigned int; T2 = long unsigned int; TPack = Tag<Pack_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:768:16:   required from ‘typename seqan::Suffix<const T>::Type seqan::suffix(const StringSet<TString, TSpec>&, const TPosition&) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<>; TPosition = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; typename Suffix<const T>::Type = Segment<const String<SimpleType<unsigned char, Dna5Q_> >, SuffixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   768 |     posLocalize(lPos, pos, stringSetLimits(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:803:25:   required from ‘seqan::Pair<typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type> seqan::_equalRangeSA(TText&, SearchTreeIterator<TSA, TSpec>, TQuery&, typename Difference<T>::Type) [with TText = const StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSA = const String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSpec = SortedList; TQuery = const String<SimpleType<unsigned char, Dna5Q_> >; typename Iterator<TLeft, const Tag<Standard_> >::Type = const Pair<long unsigned int, long unsigned int, Tag<Pack_> >*; typename Difference<T>::Type = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   803 |                         TSuffix         suf = suffix(text, *treeIter);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                               ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:897:23:   required from ‘seqan::Pair<typename seqan::Iterator<const TLimitsString, const seqan::Tag<seqan::Standard_> >::Type> seqan::equalRangeSAIterator(const TText&, const TSA&, const TQuery&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TQuery = String<SimpleType<unsigned char, Dna5Q_> >; typename Iterator<const TLimitsString, const Tag<Standard_> >::Type = const Pair<long unsigned int, long unsigned int, Tag<Pack_> >*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   897 |                 return _equalRangeSA(text, SearchTreeIterator<TSA const, SortedList>(sa), query);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1930:38:   required from ‘void seqan::_findFirstIndex(Finder<Index<TObject, TSpec>, TSpecFinder>&, const TPattern&, EsaFindMlr) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; TPattern = String<SimpleType<unsigned char, Dna5Q_> >; EsaFindMlr = const Tag<FinderMlr_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1930 |                 finder.range = equalRangeSAIterator(indexText(index), indexSA(index), pattern);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19:   required from ‘bool seqan::find(Finder<Index<TObject, TSpec>, TSpecFinder>&, const TPattern&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; TPattern = String<SimpleType<unsigned char, Dna5Q_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   292 |                         _findFirstIndex(finder, needle(pattern), TSpecFinder());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10:   required from ‘int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         if (find(finder, prefix))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:290:27:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   290 |                 int res = findExactIndex(readPieces[i], esaFinder);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:699:12: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  699 |     result = pos;
      |     ~~~~~~~^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from ‘int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader<TFile, DoublePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5Q_> >; TFile = String<char, MMap<> >; TSpec = Tag<StringReader_>; TTag = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   262 |     reserve(seq, seqLength, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from ‘int seqan::readRecord(TIdString&, TSeqString&, RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5Q_> >; TFile = String<char, MMap<> >; TPass = DoublePass<Tag<StringReader_> >; Fasta = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   557 |     int res = _clearAndReserveMemory(meta, seq, reader, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:653:49:   required from ‘int seqan::SequenceStreamImpl_::readBatch(seqan::StringSet<TString, TSpec>&, seqan::StringSet<TSequence, TSpec>&, unsigned int, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TIdSpec = seqan::Owner<>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag<seqan::TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   653 |                     if ((res = seqan::readRecord(id, seq, *_mmapReaderDoublePass, tag)) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:819:37:   required from ‘int seqan::readBatch(StringSet<TString, TSpec>&, StringSet<TSequence, TSpec>&, SequenceStream&, unsigned int) [with TId = String<char, Alloc<> >; TIdSpec = Owner<>; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSeqSpec = Owner<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   819 |         res = seqIO._impl->readBatch(ids, seqs, num, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:72:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    72 |         if (readBatch(ids, seqs, seqStream, records) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from ‘int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader<TFile, DoublePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TFile = String<char, MMap<> >; TSpec = Tag<StringReader_>; TTag = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   262 |     reserve(seq, seqLength, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from ‘int seqan::readRecord(TIdString&, TSeqString&, RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TFile = String<char, MMap<> >; TPass = DoublePass<Tag<StringReader_> >; Fasta = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   557 |     int res = _clearAndReserveMemory(meta, seq, reader, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:823:49:   required from ‘int seqan::SequenceStreamImpl_::readAll(seqan::StringSet<TString, TSpec>&, seqan::StringSet<TSequence, TSpec>&, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TIdSpec = seqan::Owner<>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag<seqan::TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   823 |                     if ((res = seqan::readRecord(id, seq, *_mmapReaderDoublePass, tag)) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:940:35:   required from ‘int seqan::readAll(StringSet<TString, TSpec>&, StringSet<TSequence, TSpec>&, SequenceStream&) [with TId = String<char, Alloc<> >; TIdSpec = Owner<>; TSequence = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSeqSpec = Owner<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   940 |         res = seqIO._impl->readAll(ids, seqs, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |               ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:90:13:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:    90 |         if (readAll(bcids, bcs, bcStream) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:118:15:   required from ‘typename seqan::Parameter_<seqan::Index<TObject, TSpec> >::Type seqan::container(Finder<Index<TObject, TSpec>, TSpecFinder>&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; typename Parameter_<Index<TObject, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   118 |                 return value(me.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1165:18:   required from ‘typename seqan::Parameter_<typename seqan::Haystack<TFinder>::Type>::Type seqan::haystack(TObject&) [with TObject = Finder<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> > >; typename Parameter_<typename Haystack<TFinder>::Type>::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >&; typename Haystack<TFinder>::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1165 |         return container(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1928:40:   required from ‘void seqan::_findFirstIndex(Finder<Index<TObject, TSpec>, TSpecFinder>&, const TPattern&, EsaFindMlr) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; TPattern = String<SimpleType<unsigned char, Dna5Q_> >; EsaFindMlr = const Tag<FinderMlr_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1928 |                 Index<TText, TSpec> &index = haystack(finder);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                              ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19:   required from ‘bool seqan::find(Finder<Index<TObject, TSpec>, TSpecFinder>&, const TPattern&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; TPattern = String<SimpleType<unsigned char, Dna5Q_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   292 |                         _findFirstIndex(finder, needle(pattern), TSpecFinder());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10:   required from ‘int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         if (find(finder, prefix))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:290:27:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   290 |                 int res = findExactIndex(readPieces[i], esaFinder);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >’ has user-provided ‘seqan::Index<TText, seqan::IndexEsa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexEsa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TSpec = void]’
  548 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairIncrementer_<TPair, TLimits>&, const TLimits2&) [with TPair = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TLimits = String<long unsigned int, Alloc<> >; TLimits2 = String<long unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   382 |                 setHost(p, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1032 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::pop(Pipe<TInput, TSpec>&, TValue&) [with TInput = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe<Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   386 |                                         _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~^
     387 |                                                 renamer, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~
     388 |                                                 names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |         Ref_ = *me;
      |         ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:355:9:   required from ‘void clipBarcodes(TSeqs&, const seqan::String<int>&, unsigned int) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   355 |                         erase(seqs[i], 0 , len);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:344:14:   required from ‘void SEQAN_TEST_clipBarcodes_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   344 |         clipBarcodes(seqs, matches, 6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:553:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:355:9:   required from ‘void clipBarcodes(TSeqs&, const seqan::String<int>&, unsigned int) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   355 |                         erase(seqs[i], 0 , len);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:344:14:   required from ‘void SEQAN_TEST_clipBarcodes_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   344 |         clipBarcodes(seqs, matches, 6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:553:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:118:15:   required from ‘typename seqan::Parameter_<seqan::Index<TObject, TSpec> >::Type seqan::container(Finder<Index<TObject, TSpec>, TSpecFinder>&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; typename Parameter_<Index<TObject, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   118 |                 return value(me.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1165:18:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19:   required from ‘bool seqan::find(Finder<Index<TObject, TSpec>, TSpecFinder>&, const TPattern&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; TPattern = String<SimpleType<unsigned char, Dna5Q_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   292 |                         _findFirstIndex(finder, needle(pattern), TSpecFinder());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10:   required from ‘int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         if (find(finder, prefix))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:326:33:   required from ‘void findAllExactIndex(seqan::String<int>&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   326 |         int hit = findExactIndex(prefices[i], finderSet[tid]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19:   required from ‘void doAll(seqan::StringSet<seqan::String<int> >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TMultiplex = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   458 |         findAllExactIndex(matches, multiplex, esaFinder, stats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:501:10:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   501 |     doAll(res, multiplex, barcodes, esaFinder, demultiplexStats, false);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >’ has user-provided ‘seqan::Index<TText, seqan::IndexEsa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexEsa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TSpec = void]’
  548 |                 Index(Index const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  497 |                                 tmpRef->i1 = localPos;
      |                                 ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   324 |             TNames_Sliced               names_sliced;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop(TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24:   required from ‘void seqan::Pool<TValue, TSpec>::pop(TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   925 |             reader->pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15:   required from ‘void seqan::pop(Pool<TValue, TPoolSpec>&, TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1159 |         me.pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  926 |             Ref_ = *cur;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   243 |     struct Pipe< TInput, Skew7 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  599 |             tmp.i1 = localPos;
      |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> >, long unsigned int, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> >, long unsigned int, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> >, long unsigned int, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> >, long unsigned int, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   341 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   352 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   161 |             if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   162 |             if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   179 |             if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   190 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   173 |     struct Pipe< TInput, Skew3 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairDecrementer_<TPair, TLimits, m>&, const TLimits2&) [with TPair = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TLimits = String<long unsigned int, Alloc<> >; unsigned int m = 7; TLimits2 = String<long unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:418:11:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   418 |                         setHost(localPos, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; unsigned int m = 7; TPack = Tag<Pack_>; TPair = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TLimitsString = String<long unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, Tag<Pack_> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1119 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   426 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; unsigned int m = 7; TPack = Tag<Pack_>; TPair = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TLimitsString = String<long unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, Tag<Pack_> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  438 |             tmpRef->i1 = localPos;
      |             ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TSpec = Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of ‘TResult seqan::_skew7NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TLimitsString = String<long unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  557 |                         tmp.i1 = localPos;
      |                         ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   148 | /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn).i2; ++nameIn; o4.i1 = p--;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                        ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   247 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   259 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   123 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27:   required from ‘bool seqan::CompareSkewDCStream<TValue>::operator()(const seqan::SkewDCStream<TValue>&, const seqan::SkewDCStream<TValue>&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   124 |                 if (a.i.i3[i] < b.i.i3[i]) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   307 |                                 if (!streamGreater(inValue[stream],inValue[rank[right]])) break;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   319 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13:   required from ‘seqan::Pipe<TInput, seqan::Skew7>& seqan::Pipe<TInput, seqan::Skew7>::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   440 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13:   required from ‘seqan::Pipe<TInput, seqan::Counter>& seqan::Pipe<TInput, seqan::Counter>::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >, seqan::Skew7>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   105 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TSpec = Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of ‘TResult seqan::_skew3NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TFunctor = seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    86 |             o2.i2[0] = (*nameIn).i2; ++nameIn;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   301 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17:   required from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   111 |                 ++in.in2;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 3; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21:   required from ‘bool seqan::AdaptorCompare2Less<TCompare>::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>; typename TCompare::first_argument_type = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; typename TCompare::second_argument_type = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:    68 |             return C(a, b) < 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~^~~~~~
/usr/include/c++/14/bits/predefined_ops.h:158:30:   required from ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Iterator2 = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   158 |         { return bool(_M_comp(*__it1, *__it2)); }
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ~~~~~~~^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1771:14:   required from ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1771 |           if (__comp(__i, __first))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |               ~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1811:25:   required from ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1811 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1902:31:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 1; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21:   required from ‘bool seqan::AdaptorCompare2Less<TCompare>::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>; typename TCompare::first_argument_type = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; typename TCompare::second_argument_type = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    68 |             return C(a, b) < 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~
/usr/include/c++/14/bits/predefined_ops.h:158:30:   required from ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Iterator2 = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   158 |         { return bool(_M_comp(*__it1, *__it2)); }
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ~~~~~~~^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1771:14:   required from ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1771 |           if (__comp(__i, __first))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |               ~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1811:25:   required from ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1811 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1902:31:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 2; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21:   required from ‘bool seqan::AdaptorCompare2Less<TCompare>::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>; typename TCompare::first_argument_type = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; typename TCompare::second_argument_type = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    68 |             return C(a, b) < 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~
/usr/include/c++/14/bits/predefined_ops.h:158:30:   required from ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Iterator2 = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   158 |         { return bool(_M_comp(*__it1, *__it2)); }
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ~~~~~~~^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1771:14:   required from ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1771 |           if (__comp(__i, __first))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |               ~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1811:25:   required from ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1811 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1902:31:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=]
  142 | /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p--;
      |                                                                                                               ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here
  144 |         case 5:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=]
  145 | /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p--;
      |                                                                                                                ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here
  147 |         case 4:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=]
  149 |                                                      cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                       ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here
  151 |         case 3:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=]
  152 | /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p--;
      |                                                                                                                 ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here
  154 |         case 2:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=]
  156 |                                cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here
  158 |         case 1:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h: In static member function ‘static const char* seqan::ClassTest::StaticData::_computePathToRoot()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:694:16: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated copying between 0 and 73 bytes from a string of length 78 [-Wstringop-truncation]
  694 |         strncpy(&buffer[0], file, pos);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 82%] Linking CXX executable ../../../bin/test_sflex_demultiplex
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_demultiplex.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o -o ../../../bin/test_sflex_demultiplex  -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 82%] Built target test_sflex_demultiplex
make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 82%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o -MF CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o.d -o CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:46:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from ‘int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader<TFile, DoublePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5Q_> >; TFile = String<char, MMap<> >; TSpec = Tag<StringReader_>; TTag = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   262 |     reserve(seq, seqLength, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from ‘int seqan::readRecord(TIdString&, TSeqString&, RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5Q_> >; TFile = String<char, MMap<> >; TPass = DoublePass<Tag<StringReader_> >; Fasta = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   557 |     int res = _clearAndReserveMemory(meta, seq, reader, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:501:40:   required from ‘int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFormatTag = seqan::Tag<seqan::TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   501 |                 res = seqan::readRecord(id, seq, *_mmapReaderDoublePass, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                       ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:697:38:   required from ‘int seqan::readRecord(TId&, TSequence&, SequenceStream&) [with TId = String<char, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5Q_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   697 |         res = seqIO._impl->readRecord(id, seq, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |               ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:150:24:   required from ‘void SEQAN_TEST_sliding_window_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   150 |                 if (seqan::readRecord(id, seq, inStream) == 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:218:5:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TBeginPosition = unsigned int; TEndPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; TBeginPosition = unsigned int; TEndPosition = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TBeginPosition = unsigned int; TEndPosition = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/read_trimming.h:219:7:   required from ‘unsigned int trimRead(TSeq&, unsigned int, const TSpec&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSpec = Mean]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   219 |         erase(seq, cut_pos, length(seq));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:153:27:   required from ‘void SEQAN_TEST_sliding_window_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   153 |                         unsigned res = trimRead(seq, 20, m);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:218:5:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TBeginPosition = unsigned int; TEndPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; TBeginPosition = unsigned int; TEndPosition = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TBeginPosition = unsigned int; TEndPosition = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/read_trimming.h:219:7:   required from ‘unsigned int trimRead(TSeq&, unsigned int, const TSpec&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSpec = Mean]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   219 |         erase(seq, cut_pos, length(seq));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:153:27:   required from ‘void SEQAN_TEST_sliding_window_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   153 |                         unsigned res = trimRead(seq, 20, m);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:218:5:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h: In static member function ‘static const char* seqan::ClassTest::StaticData::_computePathToRoot()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:694:16: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated copying between 0 and 73 bytes from a string of length 78 [-Wstringop-truncation]
  694 |         strncpy(&buffer[0], file, pos);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In static member function ‘static const char* seqan::ClassTest::StaticData::_computePathToRoot()’,
    inlined from ‘static const char* seqan::ClassTest::StaticData::pathToRoot()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:705:40,
    inlined from ‘void SEQAN_TEST_cut_tail_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:165:32:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:694:16: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated copying between 0 and 73 bytes from a string of length 78 [-Wstringop-truncation]
  694 |         strncpy(&buffer[0], file, pos);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In static member function ‘static const char* seqan::ClassTest::StaticData::_computePathToRoot()’,
    inlined from ‘static const char* seqan::ClassTest::StaticData::pathToRoot()’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:705:40,
    inlined from ‘void SEQAN_TEST_cut_bwa_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’ at /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:190:32:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:694:16: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated copying between 0 and 73 bytes from a string of length 78 [-Wstringop-truncation]
  694 |         strncpy(&buffer[0], file, pos);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
[ 83%] Linking CXX executable ../../../bin/test_sflex_trimming
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_trimming.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o -o ../../../bin/test_sflex_trimming  -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 83%] Built target test_sflex_trimming
make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 85%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o -MF CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o.d -o CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:47:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:51:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h: In instantiation of ‘unsigned int stripPair(TSeq&, TSeq&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:224:29:   required from ‘void SEQAN_TEST_strip_pair_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   224 |         unsigned insert = stripPair(seq1,seq2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                           ~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:245:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:297:16: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >&)’ is deprecated [-Wdeprecated-copy]
  297 |         TAlign align = ret.i2;
      |                ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:59:15:   required from ‘void SEQAN_TEST_get_overlap_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    59 |     TSequence seq1 = "AAAAAAAAA";
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |               ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:239:5:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TBeginPosition = long unsigned int; TEndPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; TBeginPosition = long unsigned int; TEndPosition = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TBeginPosition = long unsigned int; TEndPosition = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:538:15:   required from ‘unsigned int stripAdapter(TSeq&, TAdapter&, const TSpec&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TAdapter = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = Auto]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   538 |                 seqan::erase(seq, length(seq) - overlap, length(seq));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:198:28:   required from ‘void SEQAN_TEST_strip_adapter_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   198 |         int removed = stripAdapter(seq, ada, Auto());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:243:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TBeginPosition = long unsigned int; TEndPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; TBeginPosition = long unsigned int; TEndPosition = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TBeginPosition = long unsigned int; TEndPosition = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:538:15:   required from ‘unsigned int stripAdapter(TSeq&, TAdapter&, const TSpec&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TAdapter = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = Auto]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   538 |                 seqan::erase(seq, length(seq) - overlap, length(seq));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:198:28:   required from ‘void SEQAN_TEST_strip_adapter_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   198 |         int removed = stripAdapter(seq, ada, Auto());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:243:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = String<SimpleType<unsigned char, Dna5Q_> >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = String<SimpleType<unsigned char, Dna5Q_> >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:368:17:   required from ‘typename seqan::Source<seqan::Gaps<TSequence, seqan::Tag<seqan::ArrayGaps_> > >::Type& seqan::source(Gaps<TSequence, Tag<ArrayGaps_> >&) [with TSequence = String<SimpleType<unsigned char, Dna5Q_> >; typename Source<Gaps<TSequence, Tag<ArrayGaps_> > >::Type = String<SimpleType<unsigned char, Dna5Q_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   368 |     return value(gaps._source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:230:22:   required from ‘unsigned int getOverlap(TAlign&) [with TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   230 |         return length(source(row1)) - countTotalGaps(row2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:533:26:   required from ‘unsigned int stripAdapter(TSeq&, TAdapter&, const TSpec&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TAdapter = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = Auto]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   533 |         int overlap = getOverlap(ret.i2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:198:28:   required from ‘void SEQAN_TEST_strip_adapter_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   198 |         int removed = stripAdapter(seq, ada, Auto());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:243:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 85%] Linking CXX executable ../../../bin/test_sflex_adapter
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_adapter.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o -o ../../../bin/test_sflex_adapter  -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 85%] Built target test_sflex_adapter
make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 85%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o -MF CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o.d -o CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:  1048 |     TSize_ ret_ = _clearSpace(
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TBeginPosition = int; TEndPosition = unsigned int]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:604:22:   required from ‘void preTrim(TSeqs&, TIds&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TIds = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   604 |                 erase(seqs[i], 0, head);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:446:12:   required from ‘void SEQAN_TEST_preTrim_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   446 |     preTrim(seqs2, ids2, 3, 3, 4, stats);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:630:5:   required from here
/usr/include/c++/14/bits/stl_function.h:117:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna_>*; TSource1 = SimpleType<unsigned char, Dna_>*; TSource2 = SimpleType<unsigned char, Dna_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:604:22:   required from ‘void preTrim(TSeqs&, TIds&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TIds = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   604 |                 erase(seqs[i], 0, head);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:446:12:   required from ‘void SEQAN_TEST_preTrim_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   446 |     preTrim(seqs2, ids2, 3, 3, 4, stats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:630:5:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Alloc<> >; TValue = const char [31]; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TTargetSpec = Alloc<>; TValue = char [31]; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TString2 = char [31]; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = char [31]]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:59:16:   required from ‘void SEQAN_TEST_findN_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:    59 |     appendValue(seqs, "ATGACTGTACACGTGATCGTACGTAGCAGC");
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:625:5:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Alloc<> >; TValue = const char [7]; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = String<SimpleType<unsigned char, Dna5Q_> >; TTargetSpec = Alloc<>; TValue = char [7]; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = char [7]; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TValue = char [7]]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:335:16:   required from ‘void SEQAN_TEST_processN_paired_multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   335 |     appendValue(multiplex, "ACTGTA");
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:629:5:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Alloc<> >; TValue = const char [11]; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TTargetSpec = Alloc<>; TValue = char [11]; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TString2 = char [11]; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TValue = char [11]]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:427:16:   required from ‘void SEQAN_TEST_preTrim_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   427 |     appendValue(seqs, "ACGTAACTGA");
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:630:5:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
[ 87%] Linking CXX executable ../../../bin/test_sflex_general_processing
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_general_processing.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o -o ../../../bin/test_sflex_general_processing  -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
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make  -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 87%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o -MF CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o.d -o CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:53:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp: In function ‘seqan::ArgumentParser initParser()’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:610:10: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  610 |     std::auto_ptr<ArgumentParserBuilder> argParseBuilder;
      |          ^~~~~~~~
In file included from /usr/include/c++/14/memory:78,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/test_system.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54:
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:71:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h: In instantiation of ‘unsigned int stripPair(TSeq&, TSeq&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:411:12:   required from ‘unsigned int stripPairBatch(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TSeq>&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TSeq>&, AdapterTrimmingStats&, bool) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TId = seqan::String<char, seqan::Alloc<> >]’
/usr/include/c++/14/bits/unique_ptr.h:59:28: note:   411 |                 stripPair(read1, read2);
/usr/include/c++/14/bits/unique_ptr.h:59:28: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1926:27:   required from ‘void adapterTrimmingStage(AdapterTrimmingParams&, TSeqs&, TIds&, TSeqs&, TIds&, bool) [with TSeqs = seqan::String<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; TIds = seqan::String<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >]’
/usr/include/c++/14/bits/unique_ptr.h:59:28: note:  1926 |             stripPairBatch(seqSet1[i], idSet1[i], seqSet2[i], idSet2[i], params.stats, tagOpt);
/usr/include/c++/14/bits/unique_ptr.h:59:28: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2726:37:   required from here
/usr/include/c++/14/bits/unique_ptr.h:59:28: note:  2726 |                 adapterTrimmingStage(adapterTrimmingParams, seqSet1, idSet1, seqSet2, idSet2, tagOpt);
/usr/include/c++/14/bits/unique_ptr.h:59:28: note:       |                 ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:297:16: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  297 |         TAlign align = ret.i2;
      |                ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:67:8:   required from ‘void findAllExactIndex(seqan::String<int>&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    67 |         class Finder< Index<TText, TSpec>, TSpecFinder >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19:   required from ‘void doAll(seqan::StringSet<seqan::String<int> >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TMultiplex = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   458 |         findAllExactIndex(matches, multiplex, esaFinder, stats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1733:14:   required from ‘int demultiplexingStage(DemultiplexingParams&, TSeqsVec&, TIdsVec&, TFinder&, TMap&, GeneralStats&) [with TSeqsVec = seqan::String<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; TIdsVec = seqan::String<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TMap = seqan::String<unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1733 |         doAll(groups, params.multiplex, params.barcodes, esaFinder, params.stats, params.exclude);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2659:40:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  2659 |                 if (demultiplexingStage(demultiplexingParams, seqSet, idSet,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2660 |                                     esaFinder, map, generalStats) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >’ has user-provided ‘seqan::Index<TText, seqan::IndexEsa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexEsa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TSpec = void]’
  548 |                 Index(Index const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from ‘int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader<TFile, DoublePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5Q_> >; TFile = String<char, MMap<> >; TSpec = Tag<StringReader_>; TTag = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   262 |     reserve(seq, seqLength, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from ‘int seqan::readRecord(TIdString&, TSeqString&, RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5Q_> >; TFile = String<char, MMap<> >; TPass = DoublePass<Tag<StringReader_> >; Fasta = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   557 |     int res = _clearAndReserveMemory(meta, seq, reader, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:653:49:   required from ‘int seqan::SequenceStreamImpl_::readBatch(seqan::StringSet<TString, TSpec>&, seqan::StringSet<TSequence, TSpec>&, unsigned int, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TIdSpec = seqan::Owner<>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag<seqan::TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   653 |                     if ((res = seqan::readRecord(id, seq, *_mmapReaderDoublePass, tag)) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:819:37:   required from ‘int seqan::readBatch(StringSet<TString, TSpec>&, StringSet<TSequence, TSpec>&, SequenceStream&, unsigned int) [with TId = String<char, Alloc<> >; TIdSpec = Owner<>; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSeqSpec = Owner<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   819 |         res = seqIO._impl->readBatch(ids, seqs, num, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1225:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1225 |     if (seqan::readBatch(ids, seqs, seqStream, records) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from ‘int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader<TFile, DoublePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFile = String<char, MMap<> >; TSpec = Tag<StringReader_>; TTag = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   262 |     reserve(seq, seqLength, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from ‘int seqan::readRecord(TIdString&, TSeqString&, RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFile = String<char, MMap<> >; TPass = DoublePass<Tag<StringReader_> >; Fasta = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   557 |     int res = _clearAndReserveMemory(meta, seq, reader, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:823:49:   required from ‘int seqan::SequenceStreamImpl_::readAll(seqan::StringSet<TString, TSpec>&, seqan::StringSet<TSequence, TSpec>&, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TIdSpec = seqan::Owner<>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag<seqan::TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   823 |                     if ((res = seqan::readRecord(id, seq, *_mmapReaderDoublePass, tag)) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:940:35:   required from ‘int seqan::readAll(StringSet<TString, TSpec>&, StringSet<TSequence, TSpec>&, SequenceStream&) [with TId = String<char, Alloc<> >; TIdSpec = Owner<>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSeqSpec = Owner<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   940 |         res = seqIO._impl->readAll(ids, seqs, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |               ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1254:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1254 |     if (seqan::readAll(params.barcodeIds, params.barcodes, bcStream) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairIncrementer_<TPair, TLimits>&, const TLimits2&) [with TPair = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TLimits = String<long unsigned int, Alloc<> >; TLimits2 = String<long unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   382 |                 setHost(p, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1032 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::pop(Pipe<TInput, TSpec>&, TValue&) [with TInput = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe<Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   386 |                                         _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~^
     387 |                                                 renamer, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~
     388 |                                                 names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<long unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |         Ref_ = *me;
      |         ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:116,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:55:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h: In instantiation of ‘void seqan::posLocalize(TResult&, const Pair<R1, R2, RPack>&, const String<TRightValue, TRightSpec>&) [with TResult = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSize = long unsigned int; TSpec = Alloc<>; T1 = long unsigned int; T2 = long unsigned int; TPack = Tag<Pack_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:768:16:   required from ‘typename seqan::Suffix<const T>::Type seqan::suffix(const StringSet<TString, TSpec>&, const TPosition&) [with TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TPosition = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; typename Suffix<const T>::Type = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, SuffixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   768 |     posLocalize(lPos, pos, stringSetLimits(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:803:25:   required from ‘seqan::Pair<typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type> seqan::_equalRangeSA(TText&, SearchTreeIterator<TSA, TSpec>, TQuery&, typename Difference<T>::Type) [with TText = const StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSA = const String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSpec = SortedList; TQuery = const String<SimpleType<unsigned char, Dna5Q_> >; typename Iterator<TLeft, const Tag<Standard_> >::Type = const Pair<long unsigned int, long unsigned int, Tag<Pack_> >*; typename Difference<T>::Type = long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   803 |                         TSuffix         suf = suffix(text, *treeIter);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                               ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:897:23:   required from ‘seqan::Pair<typename seqan::Iterator<const TLimitsString, const seqan::Tag<seqan::Standard_> >::Type> seqan::equalRangeSAIterator(const TText&, const TSA&, const TQuery&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TQuery = String<SimpleType<unsigned char, Dna5Q_> >; typename Iterator<const TLimitsString, const Tag<Standard_> >::Type = const Pair<long unsigned int, long unsigned int, Tag<Pack_> >*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   897 |                 return _equalRangeSA(text, SearchTreeIterator<TSA const, SortedList>(sa), query);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1930:38:   required from ‘void seqan::_findFirstIndex(Finder<Index<TObject, TSpec>, TSpecFinder>&, const TPattern&, EsaFindMlr) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; TPattern = String<SimpleType<unsigned char, Dna5Q_> >; EsaFindMlr = const Tag<FinderMlr_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1930 |                 finder.range = equalRangeSAIterator(indexText(index), indexSA(index), pattern);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19:   required from ‘bool seqan::find(Finder<Index<TObject, TSpec>, TSpecFinder>&, const TPattern&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; TPattern = String<SimpleType<unsigned char, Dna5Q_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   292 |                         _findFirstIndex(finder, needle(pattern), TSpecFinder());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10:   required from ‘int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   274 |         if (find(finder, prefix))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:326:33:   required from ‘void findAllExactIndex(seqan::String<int>&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   326 |         int hit = findExactIndex(prefices[i], finderSet[tid]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                   ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19:   required from ‘void doAll(seqan::StringSet<seqan::String<int> >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TMultiplex = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   458 |         findAllExactIndex(matches, multiplex, esaFinder, stats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1733:14:   required from ‘int demultiplexingStage(DemultiplexingParams&, TSeqsVec&, TIdsVec&, TFinder&, TMap&, GeneralStats&) [with TSeqsVec = seqan::String<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; TIdsVec = seqan::String<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TMap = seqan::String<unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1733 |         doAll(groups, params.multiplex, params.barcodes, esaFinder, params.stats, params.exclude);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2659:40:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2659 |                 if (demultiplexingStage(demultiplexingParams, seqSet, idSet,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2660 |                                     esaFinder, map, generalStats) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:699:12: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  699 |     result = pos;
      |     ~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:716:22:   required from ‘void preTrim(TSeqs&, TIds&, TMulti&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TIds = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TMulti = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   716 |                 erase(seqs[i], 0, head);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1607:24:   required from ‘void preprocessingStage(TSeqs&, TIds&, DemultiplexingParams&, ProcessingParams&, const seqan::ArgumentParser&, GeneralStats&) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TIds = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1607 |                 preTrim(seqs, ids, demultiplexingParams.multiplex, processingParams.trimLeft,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1608 |                     processingParams.trimRight, processingParams.minLen, generalStats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2655:35:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2655 |                 preprocessingStage(seqSet[0], idSet[0], demultiplexingParams,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2656 |                     processingParams, parser, generalStats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  599 |             tmp.i1 = localPos;
      |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   324 |             TNames_Sliced               names_sliced;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop(TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24:   required from ‘void seqan::Pool<TValue, TSpec>::pop(TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   925 |             reader->pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15:   required from ‘void seqan::pop(Pool<TValue, TPoolSpec>&, TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1159 |         me.pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  926 |             Ref_ = *cur;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   243 |     struct Pipe< TInput, Skew7 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:716:22:   required from ‘void preTrim(TSeqs&, TIds&, TMulti&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TIds = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TMulti = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   716 |                 erase(seqs[i], 0, head);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1607:24:   required from ‘void preprocessingStage(TSeqs&, TIds&, DemultiplexingParams&, ProcessingParams&, const seqan::ArgumentParser&, GeneralStats&) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TIds = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1607 |                 preTrim(seqs, ids, demultiplexingParams.multiplex, processingParams.trimLeft,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1608 |                     processingParams.trimRight, processingParams.minLen, generalStats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2655:35:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  2655 |                 preprocessingStage(seqSet[0], idSet[0], demultiplexingParams,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2656 |                     processingParams, parser, generalStats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:118:15:   required from ‘typename seqan::Parameter_<seqan::Index<TObject, TSpec> >::Type seqan::container(Finder<Index<TObject, TSpec>, TSpecFinder>&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; typename Parameter_<Index<TObject, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   118 |                 return value(me.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1165:18:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19:   required from ‘bool seqan::find(Finder<Index<TObject, TSpec>, TSpecFinder>&, const TPattern&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; TPattern = String<SimpleType<unsigned char, Dna5Q_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   292 |                         _findFirstIndex(finder, needle(pattern), TSpecFinder());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10:   required from ‘int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         if (find(finder, prefix))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:326:33:   required from ‘void findAllExactIndex(seqan::String<int>&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   326 |         int hit = findExactIndex(prefices[i], finderSet[tid]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19:   required from ‘void doAll(seqan::StringSet<seqan::String<int> >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TMultiplex = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   458 |         findAllExactIndex(matches, multiplex, esaFinder, stats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1733:14:   required from ‘int demultiplexingStage(DemultiplexingParams&, TSeqsVec&, TIdsVec&, TFinder&, TMap&, GeneralStats&) [with TSeqsVec = seqan::String<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; TIdsVec = seqan::String<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TMap = seqan::String<unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1733 |         doAll(groups, params.multiplex, params.barcodes, esaFinder, params.stats, params.exclude);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2659:40:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2659 |                 if (demultiplexingStage(demultiplexingParams, seqSet, idSet,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2660 |                                     esaFinder, map, generalStats) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >’ has user-provided ‘seqan::Index<TText, seqan::IndexEsa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexEsa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TSpec = void]’
  548 |                 Index(Index const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> >, long unsigned int, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> >, long unsigned int, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> >, long unsigned int, Pair<long unsigned int, long unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   341 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   352 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   161 |             if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   162 |             if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   179 |             if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   190 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   173 |     struct Pipe< TInput, Skew3 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairDecrementer_<TPair, TLimits, m>&, const TLimits2&) [with TPair = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TLimits = String<long unsigned int, Alloc<> >; unsigned int m = 7; TLimits2 = String<long unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                         setHost(localPos, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TLimitsString = String<long unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1119 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TLimitsString = String<long unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<long unsigned int, long unsigned int, Tag<Pack_> >, String<long unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  557 |                         tmp.i1 = localPos;
      |                         ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TSpec = Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of ‘TResult seqan::_skew7NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   148 | /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn).i2; ++nameIn; o4.i1 = p--;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                        ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   247 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   259 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   123 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27:   required from ‘bool seqan::CompareSkewDCStream<TValue>::operator()(const seqan::SkewDCStream<TValue>&, const seqan::SkewDCStream<TValue>&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   124 |                 if (a.i.i3[i] < b.i.i3[i]) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   307 |                                 if (!streamGreater(inValue[stream],inValue[rank[right]])) break;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   319 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13:   required from ‘seqan::Pipe<TInput, seqan::Skew7>& seqan::Pipe<TInput, seqan::Skew7>::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   440 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13:   required from ‘seqan::Pipe<TInput, seqan::Counter>& seqan::Pipe<TInput, seqan::Counter>::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >, seqan::Skew7>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   105 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<long unsigned int, Tuple<long unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TCompare = _skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TSpec = Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of ‘TResult seqan::_skew3NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TFunctor = seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    86 |             o2.i2[0] = (*nameIn).i2; ++nameIn;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, long unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<long unsigned int, Tuple<long unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   301 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<long unsigned int, long unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > >; TSource = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = long unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 2, void>, Tuple<long unsigned int, 2, void>, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17:   required from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   111 |                 ++in.in2;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 2, void>, seqan::Tuple<long unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = long unsigned int; T2 = seqan::Tuple<long unsigned int, 2, void>; T3 = seqan::Tuple<long unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 3; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21:   required from ‘bool seqan::AdaptorCompare2Less<TCompare>::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>; typename TCompare::first_argument_type = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; typename TCompare::second_argument_type = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:    68 |             return C(a, b) < 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~^~~~~~
/usr/include/c++/14/bits/predefined_ops.h:158:30:   required from ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Iterator2 = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   158 |         { return bool(_M_comp(*__it1, *__it2)); }
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ~~~~~~~^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1771:14:   required from ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1771 |           if (__comp(__i, __first))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |               ~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1811:25:   required from ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1811 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1902:31:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 1; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21:   required from ‘bool seqan::AdaptorCompare2Less<TCompare>::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>; typename TCompare::first_argument_type = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; typename TCompare::second_argument_type = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    68 |             return C(a, b) < 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~
/usr/include/c++/14/bits/predefined_ops.h:158:30:   required from ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Iterator2 = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   158 |         { return bool(_M_comp(*__it1, *__it2)); }
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ~~~~~~~^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1771:14:   required from ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1771 |           if (__comp(__i, __first))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |               ~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1811:25:   required from ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1811 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1902:31:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_<TValue>::Type = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 2; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21:   required from ‘bool seqan::AdaptorCompare2Less<TCompare>::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>; typename TCompare::first_argument_type = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; typename TCompare::second_argument_type = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    68 |             return C(a, b) < 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~
/usr/include/c++/14/bits/predefined_ops.h:158:30:   required from ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Iterator2 = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   158 |         { return bool(_M_comp(*__it1, *__it2)); }
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ~~~~~~~^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1771:14:   required from ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1771 |           if (__comp(__i, __first))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |               ~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1811:25:   required from ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1811 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1902:31:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int> > >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=]
  142 | /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p--;
      |                                                                                                               ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here
  144 |         case 5:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=]
  145 | /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p--;
      |                                                                                                                ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here
  147 |         case 4:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=]
  149 |                                                      cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                       ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here
  151 |         case 3:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=]
  152 | /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p--;
      |                                                                                                                 ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here
  154 |         case 2:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=]
  156 |                                cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here
  158 |         case 1:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<long unsigned int, Alloc<> >; TNameInput = Pool<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, long unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, long unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, long unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<long unsigned int, long unsigned int, Tag<Pack_> >, Tuple<long unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, long unsigned int>, long unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:279:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >, Alloc<> >; TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::PageBucketExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<long unsigned int, Tuple<long unsigned int, 3, void>, Tuple<long unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8,
    inlined from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18,
    inlined from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::pop() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::AdapterSpec>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadSorterSpec_> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24,
    inlined from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15,
    inlined from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:289:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/new: In member function ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
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/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexDMulti  libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
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cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/DependInfo.cmake "--color="
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make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 95%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DFLEX_PROG=FILTERING -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o -MF CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o.d -o CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp
[ 95%] Linking CXX executable ../../../bin/sflexFilter
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexFilter.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexFilter  libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 95%] Built target sflexFilter
make  -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 95%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o -MF CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o.d -o CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp
[ 96%] Linking CXX executable ../../../bin/seqan_flexbar
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_flexbar.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o -o ../../../bin/seqan_flexbar  libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
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make  -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 96%] Building CXX object extras/apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -std=c++11 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o -MF CMakeFiles/sgip.dir/sgip.cpp.o.d -o CMakeFiles/sgip.dir/sgip.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types.h:43,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp:27:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip_base.h:33,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp:33:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[ 98%] Linking CXX executable ../../../bin/sgip
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip && /usr/bin/cmake -E cmake_link_script CMakeFiles/sgip.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -std=c++11 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sgip.dir/sgip.cpp.o -o ../../../bin/sgip  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 98%] Built target sgip
make  -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp/CMakeFiles/variant_comp.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 98%] Building CXX object extras/apps/variant_comp/CMakeFiles/variant_comp.dir/variant_comp.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/variant_comp/CMakeFiles/variant_comp.dir/variant_comp.cpp.o -MF CMakeFiles/variant_comp.dir/variant_comp.cpp.o.d -o CMakeFiles/variant_comp.dir/variant_comp.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:22:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:33:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:238:37: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  238 | struct LessGPosSize : public ::std::binary_function < TIndel, TIndel, bool >
      |                                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:256:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 | struct LessGPos : public ::std::binary_function < TVariant, TVariant, bool >
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h: In function ‘bool seqan::compareIndelPair(TIndel&, TIndel&, TOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:278:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  278 |     if(options.genotypeAware && predIndel.genotype != refIndel.genotype)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:281:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  281 |         int sizeTol = int((double)abs(refIndel.indelSize) * options.sizeTolerance);
      |         ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h: In function ‘int seqan::compareIndels(TIndelSet&, TIndelSet&, TGenome&, TGenomeIDs&, TOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:477:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  477 |     for(TIndelIt it = begin(refIndels); it != end(refIndels); ++it)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  479 |         for(TIndelIt it = begin(predIndels); it != end(predIndels); ++it)
      |         ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of ‘void seqan::findIntervals(const Graph<TSpec>&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue, String<TCargo>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<int, int>, StorePointsOnly>, Alloc<> >; TVertexDescriptor = unsigned int; TValue = int; TCargo = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1917:15:   required from ‘void seqan::findIntervals(const Graph<TSpec>&, const TPropertyMap&, TValue, TValue, String<TEmission>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<int, int>, StorePointsOnly>, Alloc<> >; TValue = int; TCargo = int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note:  1917 |         findIntervals(g, pm, act_knot, query_begin, query_end, result);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1898:15:   required from ‘void seqan::findIntervals(const IntervalTree<TValue, TCargo>&, TValue, TValue, String<TChar>&) [with TValue = int; TCargo = int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note:  1898 |         findIntervals(tree.g,tree.pm,query_begin,query_end,result);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:582:17:   required from ‘int seqan::compareIndels(TIndelSet&, TIndelSet&, TGenome&, TGenomeIDs&, TOptions&) [with TIndelSet = StringSet<IndelInfo>; TGenome = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TGenomeIDs = String<String<char, Alloc<> > >; TOptions = IndelCompareOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note:   582 |                         findIntervals(itree,beginPoint,endPoint,intersectingIntervals);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note:       |                         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:834:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note:   834 |     int result = compareIndels(refIndels,predictedIndels,genomes,genomeIDs,options);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1949:26: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1949 |                 act_prop = property(pm,act_knot);
      |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1961:43: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1961 |                                 next_prop = property(pm,targetVertex(it));
      |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1982:51: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1982 |                                         next_prop = property(pm,targetVertex(it));
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = long unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:444:39:   required from ‘int readGFF(const char*, TIndelSet&, TSnpSet&, TGenomeMap&, TOptions&) [with TIndelSet = seqan::StringSet<seqan::IndelInfo>; TSnpSet = seqan::StringSet<seqan::SnpInfo>; TGenomeMap = std::map<seqan::String<char, seqan::Alloc<> >, unsigned int>; TOptions = seqan::IndelCompareOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   444 |                 TIndel indel = {0,0,0,0,0,0,0,0,0,0,0,0,0,0,0};
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                                                     ^
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:815:16:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   815 |     if (readGFF(toCString(options.inputReference), refIndels, refSnps, gIdStringToIdNumMap, options) > 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
In function ‘void seqan::allocate(T&, TValue*&, TSize, const Tag<TUsage>&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = AllocateStorage_]’,
    inlined from ‘typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(String<TValue, Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
    inlined from ‘typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(String<TValue, TSpec>&, TSize, Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
    inlined from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
    inlined from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
    inlined from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
    inlined from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >; TSize = long unsigned int]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
    inlined from ‘void seqan::eraseBack(T&) [with T = String<std::__cxx11::basic_string<char>, Alloc<> >]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
    inlined from ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’ at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  297 | */  data = (TValue *) operator new(count * sizeof(TValue));
      |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/exception_ptr.h:38,
                 from /usr/include/c++/14/exception:166,
                 from /usr/include/c++/14/ios:41:
/usr/include/c++/14/new: In function ‘TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here
  131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^~~~~~~~
[100%] Linking CXX executable ../../../bin/variant_comp
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp && /usr/bin/cmake -E cmake_link_script CMakeFiles/variant_comp.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/variant_comp.dir/variant_comp.cpp.o -o ../../../bin/variant_comp  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[100%] Built target variant_comp
make[1]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 0
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.of9kia
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64
++ dirname /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64
+ CFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd seqan-1.4.2
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64 'INSTALL=/usr/bin/install -p' -C build/Release
make: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
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/usr/bin/make  -f CMakeFiles/Makefile2 all
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cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona.dir/DependInfo.cmake "--color="
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make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  4%] Built target fiona
/usr/bin/make  -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/fiona/CMakeFiles/fiona_illumina.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  6%] Built target fiona_illumina
/usr/bin/make  -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason/CMakeFiles/mason.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/mason/CMakeFiles/mason.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  8%] Built target mason
/usr/bin/make  -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/micro_razers/CMakeFiles/micro_razers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  9%] Built target micro_razers
/usr/bin/make  -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/pair_align/CMakeFiles/pair_align.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 11%] Built target pair_align
/usr/bin/make  -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 12%] Built target rabema_prepare_sam
/usr/bin/make  -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 14%] Built target rabema_build_gold_standard
/usr/bin/make  -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 16%] Built target rabema_evaluate
/usr/bin/make  -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_do_search.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 16%] Built target rabema_do_search
/usr/bin/make  -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/razers/CMakeFiles/razers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 19%] Built target razers
/usr/bin/make  -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2/CMakeFiles/razers2.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/razers2/CMakeFiles/razers2.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 20%] Built target razers2
/usr/bin/make  -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/sak/CMakeFiles/sak.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 22%] Built target sak
/usr/bin/make  -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 24%] Built target sam2matrix
/usr/bin/make  -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/samcat/CMakeFiles/samcat.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 25%] Built target samcat
/usr/bin/make  -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 25%] Built target seqan_tcoffee
/usr/bin/make  -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons/CMakeFiles/seqcons.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/seqcons/CMakeFiles/seqcons.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 27%] Built target seqcons
/usr/bin/make  -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/snp_store/CMakeFiles/snp_store.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 29%] Built target snp_store
/usr/bin/make  -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/splazers/CMakeFiles/splazers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 29%] Built target splazers
/usr/bin/make  -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/stellar/CMakeFiles/stellar.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 30%] Built target stellar
/usr/bin/make  -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/tree_recon/CMakeFiles/tree_recon.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Built target tree_recon
/usr/bin/make  -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/CMakeFiles/seqan_extras.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/CMakeFiles/seqan_extras.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Built target seqan_extras
/usr/bin/make  -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/alf/CMakeFiles/alf.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Built target alf
/usr/bin/make  -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Built target breakpoint_calculator
/usr/bin/make  -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/bs_tools/CMakeFiles/bisar.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 33%] Built target bisar
/usr/bin/make  -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/bs_tools/CMakeFiles/casbar.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 35%] Built target casbar
/usr/bin/make  -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/bs_tools/CMakeFiles/four2three.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 37%] Built target four2three
/usr/bin/make  -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 38%] Built target fx_bam_coverage
/usr/bin/make  -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 38%] Built target fx_fastq_stats
/usr/bin/make  -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/gustaf/CMakeFiles/gustaf.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 40%] Built target gustaf
/usr/bin/make  -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/insegt/CMakeFiles/insegt.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 41%] Built target insegt
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_sim.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 50%] Built target mason_sim
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_genome.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 51%] Built target mason_genome
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_methylation.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 51%] Built target mason_methylation
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 53%] Built target mason_frag_sequencing
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_variator.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 54%] Built target mason_variator
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_materializer.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 56%] Built target mason_materializer
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_simulator.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 58%] Built target mason_simulator
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_splicing.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 59%] Built target mason_splicing
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_tests.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 61%] Built target mason_tests
/usr/bin/make  -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 61%] Built target roi_plot_thumbnails
/usr/bin/make  -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 64%] Built target bam2roi
/usr/bin/make  -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 67%] Built target roi_feature_projection
/usr/bin/make  -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 69%] Built target param_chooser
/usr/bin/make  -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 70%] Built target test_funcs_param_chooser
/usr/bin/make  -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/razers3/CMakeFiles/razers3.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 72%] Built target razers3
/usr/bin/make  -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 74%] Built target razers3_simulate_reads
/usr/bin/make  -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 75%] Built target razers3_quality2prob
/usr/bin/make  -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 77%] Built target rep_sep
/usr/bin/make  -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/search.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/searchjoin/CMakeFiles/search.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 79%] Built target search
/usr/bin/make  -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/join.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/searchjoin/CMakeFiles/join.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 80%] Built target join
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 82%] Built target test_sflex_demultiplex
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 83%] Built target test_sflex_trimming
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 85%] Built target test_sflex_adapter
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 87%] Built target test_sflex_general_processing
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 88%] Built target seqan_flexlib
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 90%] Built target sflexQC
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 91%] Built target sflexAR
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 93%] Built target sflexDMulti
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 95%] Built target sflexFilter
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 96%] Built target seqan_flexbar
/usr/bin/make  -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/sgip/CMakeFiles/sgip.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 98%] Built target sgip
/usr/bin/make  -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp/CMakeFiles/variant_comp.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[100%] Built target variant_comp
make[1]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 0
/usr/bin/make  -f CMakeFiles/Makefile2 preinstall
make[1]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[1]: Nothing to be done for 'preinstall'.
make[1]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/dfi
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/dfi/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/dfi/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/dfi/example/fasta1.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/dfi/example/fasta2.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/fiona
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/compute_gain
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/fiona/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/fiona/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/fiona/example/reads.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/mason
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/mason/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/mason/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/mason/example/SRR018294.1.1M.error_dist
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/mason/example/SRR018311.1.1M.error_dist
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/mason/example/SRR026674.1.1M.error_dist
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/mason/example/SRR049254.1.1M.error_dist
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/micro_razers
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/micro_razers/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/micro_razers/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/micro_razers/example/genome.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/micro_razers/example/reads.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/micro_razers/example/reads.fa.result
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/pair_align
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/pair_align/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/pair_align/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/rabema_prepare_sam
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/rabema_build_gold_standard
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/rabema_evaluate
-- Up-to-date: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/rabema_prepare_sam
-- Up-to-date: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/rabema_build_gold_standard
-- Up-to-date: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/rabema_evaluate
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/rabema/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/rabema/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/razers
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/razers/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/razers/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/razers/example/genome.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/razers/example/reads.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/razers/example/reads2.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/razers2
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/razers2/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/razers2/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/razers2/example/genome.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/razers2/example/reads.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/razers2/example/reads2.fa
Change Dir: '/builddir/build/BUILD/seqan-1.4.2/build/Release'

Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile sak_doc
gmake[1]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/cmake -S/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/gmake  -f CMakeFiles/Makefile2 sak_doc
gmake[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/cmake -S/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 2
/usr/bin/gmake  -f CMakeFiles/Makefile2 core/apps/sak/CMakeFiles/sak_doc.dir/all
gmake[3]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/gmake  -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/depend
gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core /builddir/build/BUILD/seqan-1.4.2/build/Release/core/CMakeFiles/seqan_core.dir/DependInfo.cmake "--color="
gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/gmake  -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/build
gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
gmake[4]: Nothing to be done for 'core/CMakeFiles/seqan_core.dir/build'.
gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  0%] Built target seqan_core
/usr/bin/gmake  -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/depend
gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake "--color="
gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/gmake  -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/build
gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
gmake[4]: Nothing to be done for 'core/apps/sak/CMakeFiles/sak.dir/build'.
gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 50%] Built target sak
/usr/bin/gmake  -f core/apps/sak/CMakeFiles/sak_doc.dir/build.make core/apps/sak/CMakeFiles/sak_doc.dir/depend
gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak_doc.dir/DependInfo.cmake "--color="
gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/gmake  -f core/apps/sak/CMakeFiles/sak_doc.dir/build.make core/apps/sak/CMakeFiles/sak_doc.dir/build
gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[100%] Generating README.sak.txt
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && ../../../bin/sak --export-help=txt > README.sak.txt
[100%] Generating sak.1
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && ../../../bin/sak --export-help=man > sak.1
gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[100%] Built target sak_doc
gmake[3]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
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gmake[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
gmake[1]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'

-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/sak
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/sak/LICENSE
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-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/sak/man/sak.1
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-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/seqan_tcoffee/example/seq.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/seqcons
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/seqcons/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/seqcons/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/snp_store
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-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/snp_store/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/snp_store/example/exampleGenome.fa
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-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/splazers/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/splazers/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/splazers/example/genome.fa
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-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/stellar
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-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/stellar/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/stellar/example/NC_001474.fasta
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-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/tree_recon
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-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/alf
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/alf/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/alf/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/alf/example/small.fasta
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/breakpoint_calculator
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/breakpoint_calculator/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/breakpoint_calculator/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/breakpoint_calculator/example/alignment.maf
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/bisar
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-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/bs_tools/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/bs_tools/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/fx_bam_coverage
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-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/fx_tools/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/gustaf
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-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/gustaf/example/stellar.gff
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/insegt
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-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/insegt/README
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-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/mason2/LICENSE
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-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/bam2roi
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/roi_feature_projection
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/roi_plot_thumbnails
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-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/gff_sort.sh
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/roi_sort.sh
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/roi_plot_9.sh
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/plot.awk
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-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/ngs_roi/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/ngs_roi/example/dmel.bed
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/ngs_roi/example/dmel.gtf
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/ngs_roi/example/example.bam
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/ngs_roi/R/ngsroi_0.1.tar.gz
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/ngs_roi/R/ngsroi_0.1.zip
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/param_chooser
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-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/param_chooser/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/razers3
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/razers3/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/razers3/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/razers3/example/genome.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/razers3/example/reads.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/razers3/example/reads2.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/rep_sep
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-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/rep_sep/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/join
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-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/searchjoin/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/seqan_flexbar
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/seqan_flexbar/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/seqan_flexbar/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/sgip
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/sgip/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/sgip/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/sgip/example/iso_m2D_m196.A01
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-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/sgip/example/iso_r01_m200.A01
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/sgip/example/iso_r01_m200.B00
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/sgip/example/iso_r01_m200.B01
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/sgip/example/latin-4
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/sgip/example/lattice-4
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/sgip/example/sts-7
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/variant_comp
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/variant_comp/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/variant_comp/README
make: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
+ mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/include/seqan
+ cp -pr extras/include/seqan/LICENSE extras/include/seqan/align_extend extras/include/seqan/align_extend.h extras/include/seqan/align_profile extras/include/seqan/align_profile.h extras/include/seqan/align_split extras/include/seqan/align_split.h extras/include/seqan/alignment_free extras/include/seqan/alignment_free.h extras/include/seqan/bam_io extras/include/seqan/basic extras/include/seqan/basic_extras.h extras/include/seqan/bed_io extras/include/seqan/bed_io.h extras/include/seqan/find extras/include/seqan/find_extras.h extras/include/seqan/find_motif extras/include/seqan/find_motif.h extras/include/seqan/index extras/include/seqan/index_extras.h extras/include/seqan/journaled_set extras/include/seqan/journaled_set.h extras/include/seqan/math extras/include/seqan/math.h extras/include/seqan/misc extras/include/seqan/misc_extras.h extras/include/seqan/parse_lm extras/include/seqan/parse_lm.h extras/include/seqan/roi_io extras/include/seqan/roi_io.h extras/include/seqan/sequence extras/include/seqan/sequence_extras.h extras/include/seqan/statistics extras/include/seqan/statistics.h extras/include/seqan/translation extras/include/seqan/translation.h extras/include/seqan/vcf_io extras/include/seqan/vcf_io.h /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/include/seqan
+ cp -pr core/include/seqan/LICENSE core/include/seqan/align core/include/seqan/align.h core/include/seqan/arg_parse core/include/seqan/arg_parse.h core/include/seqan/bam_io core/include/seqan/bam_io.h core/include/seqan/basic core/include/seqan/basic.h core/include/seqan/consensus core/include/seqan/consensus.h core/include/seqan/file core/include/seqan/file.h core/include/seqan/find core/include/seqan/find.h core/include/seqan/gff_io core/include/seqan/gff_io.h core/include/seqan/graph_algorithms core/include/seqan/graph_algorithms.h core/include/seqan/graph_align core/include/seqan/graph_align.h core/include/seqan/graph_msa core/include/seqan/graph_msa.h core/include/seqan/graph_types core/include/seqan/graph_types.h core/include/seqan/index core/include/seqan/index.h core/include/seqan/map core/include/seqan/map.h core/include/seqan/misc core/include/seqan/modifier core/include/seqan/modifier.h core/include/seqan/parallel core/include/seqan/parallel.h core/include/seqan/pipe core/include/seqan/pipe.h core/include/seqan/platform core/include/seqan/platform.h core/include/seqan/random core/include/seqan/random.h core/include/seqan/score core/include/seqan/score.h core/include/seqan/seeds core/include/seqan/seeds.h core/include/seqan/seq_io core/include/seqan/seq_io.h core/include/seqan/sequence core/include/seqan/sequence.h core/include/seqan/sequence_journaled core/include/seqan/sequence_journaled.h core/include/seqan/store core/include/seqan/store.h core/include/seqan/stream core/include/seqan/stream.h core/include/seqan/system core/include/seqan/system.h core/include/seqan/version.h /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/include/seqan
+ mkdir -p seqandoc
+ cp -pr /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/alf /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/breakpoint_calculator /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/bs_tools /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/dfi /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/fiona /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/fx_tools /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/gustaf /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/insegt /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/mason /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/mason2 /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/micro_razers /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/ngs_roi /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/pair_align /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/param_chooser /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/rabema /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/razers /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/razers2 /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/razers3 /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/rep_sep /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/sak /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/sam2matrix /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/samcat /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/searchjoin /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/seqan_flexbar /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/seqan_tcoffee /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/seqcons /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/sgip /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/snp_store /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/splazers /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/stellar /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/tree_recon /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan/variant_comp seqandoc
+ rm -rf /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan
+ rm -f 'seqandoc/*.txt'
+ mv /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/join /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin/searchjoin
+ find /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/bin -type f -name '*.h' -exec chmod 0755 '{}' ';'
+ /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 1.4.2-53.fc40 --unique-debug-suffix -1.4.2-53.fc40.x86_64 --unique-debug-src-base seqan-1.4.2-53.fc40.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/seqan-1.4.2
find-debuginfo: starting
Extracting debug info from 43 files
DWARF-compressing 43 files
sepdebugcrcfix: Updated 43 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/seqan-1.4.2-53.fc40.x86_64
24419 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4
+ /usr/lib/rpm/redhat/brp-python-hardlink
Processing files: seqan-1.4.2-53.fc40.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.RMwSiL
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ DOCDIR=/builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/README.rst /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.XYG3O5
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ LICENSEDIR=/builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/licenses/seqan
+ export LC_ALL=
+ LC_ALL=
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/licenses/seqan
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/BSD.txt /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/licenses/seqan
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/GPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/licenses/seqan
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/LGPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/licenses/seqan
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bundled(gnulib) seqan = 1.4.2-53.fc40 seqan(x86-64) = 1.4.2-53.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.25)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.2)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.35)(64bit) libc.so.6(GLIBC_2.36)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libemon.so.1.3.1()(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_2.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libz.so.1()(64bit) libz.so.1(ZLIB_1.2.2.3)(64bit) libz.so.1(ZLIB_1.2.3.3)(64bit) rtld(GNU_HASH)
Processing files: seqan-devel-1.4.2-53.fc40.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.UHsCZ0
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ DOCDIR=/builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan-devel
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan-devel
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/README.rst /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan-devel
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.2qSbjA
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ LICENSEDIR=/builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/licenses/seqan-devel
+ export LC_ALL=
+ LC_ALL=
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/licenses/seqan-devel
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/BSD.txt /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/licenses/seqan-devel
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/GPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/licenses/seqan-devel
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/LGPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/licenses/seqan-devel
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: seqan-devel = 1.4.2-53.fc40 seqan-devel(x86-64) = 1.4.2-53.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: seqan-doc-1.4.2-53.fc40.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.M3ZSpt
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ DOCDIR=/builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan-doc
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan-doc
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/seqandoc /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/doc/seqan-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.7CH6ts
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ LICENSEDIR=/builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/licenses/seqan-doc
+ export LC_ALL=
+ LC_ALL=
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/licenses/seqan-doc
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/BSD.txt /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/licenses/seqan-doc
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/GPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/licenses/seqan-doc
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/LGPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64/usr/share/licenses/seqan-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: seqan-doc = 1.4.2-53.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: seqan-debugsource-1.4.2-53.fc40.x86_64
Provides: seqan-debugsource = 1.4.2-53.fc40 seqan-debugsource(x86-64) = 1.4.2-53.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: seqan-debuginfo-1.4.2-53.fc40.x86_64
Provides: debuginfo(build-id) = 13c24f5ef4287e677a1edeb5111d5098ff5c1661 debuginfo(build-id) = 13f33f410ce5afbd6785aed35318b3704fbe29c2 debuginfo(build-id) = 14ad7bcf69cbaa0e423fab42a27b36a956a1a1f7 debuginfo(build-id) = 16803f503e83ef951de38516e85fec78f2f856a5 debuginfo(build-id) = 1cabf93913b40ef9c3a55e2f901063915d430005 debuginfo(build-id) = 1f7983d1f13d80c37b27e69cd5cfd1f0d666ae63 debuginfo(build-id) = 205b5746cf3d8191f0313ca55eefc5e1112df167 debuginfo(build-id) = 22ad5b84884fad7ab469be88600571e805c55fbe debuginfo(build-id) = 25701ca666338e4e25ba8e9572e21e851718a660 debuginfo(build-id) = 2d9de2ca49f57f08a6dfbb11debabb4e1cf2b94c debuginfo(build-id) = 2e2811cda80543763e13189c756f956f0de6da31 debuginfo(build-id) = 3583ec5fe5702a4d7f662b24a12fd8d6bc4ece5e debuginfo(build-id) = 3ab99b4a30aeeed69d83ef2e3e6c67f9e9517129 debuginfo(build-id) = 3b9d6317cb748b7ea9ec7b77f0fdf137132adb9d debuginfo(build-id) = 43134b41f94594e60acf2a2cfe41acded522db83 debuginfo(build-id) = 4430a21a3be7326c62db9e6bbac7d8289fd7f02b debuginfo(build-id) = 49d5f8a7af70b804728dc8d1080992f44c3f73a2 debuginfo(build-id) = 4cad00b3a034e113f8444e2788131a86fed12967 debuginfo(build-id) = 527877b59d08a20c1707cf22cfe4ec4f0abdeaf6 debuginfo(build-id) = 5444fb5ea453bf0f9d26bac9bc3043fab0671397 debuginfo(build-id) = 5c01aef54c18c6be9a67984a0bf2d77e586e1c9f debuginfo(build-id) = 62effbf8ad2230f6144bd4308545b3eb950c3143 debuginfo(build-id) = 6c9f92e641f10cd6f6376c655fa0db2c0dc59f7a debuginfo(build-id) = 6da392d7e2cac045b1562816a1798b4ccfc7b1ac debuginfo(build-id) = 707552e770fac803464b19c1015394545eb78318 debuginfo(build-id) = 7c2c868955ec3398b70a6f44b05ff476d85aa977 debuginfo(build-id) = 859fde8366040e50bfa56a89fa22598642c9aa72 debuginfo(build-id) = 8703287f93740b99b03be1cefe3583072af3f573 debuginfo(build-id) = 902f8ff9301d765791da09a2c97023d26bbaaba2 debuginfo(build-id) = 90f5f70aa87de1973f0c96c4b0004cb6d2ce0ac2 debuginfo(build-id) = 91a4bc9f507ca258733d63c48571714a38be402d debuginfo(build-id) = 9990314e9544ec41a48f5063a256f59ca6a08b31 debuginfo(build-id) = 9c3b481d116902098be70c3fc1d5305134a464ae debuginfo(build-id) = 9e801db0360cf3a1de051914b52e64dfca77c853 debuginfo(build-id) = aa015826636686e075be156be63b8d343bdce23b debuginfo(build-id) = bf7a7752b76cec5654ee9306d4c12662e063bc42 debuginfo(build-id) = bf9fa596523e0f21f968f30fcd10df5fdc708216 debuginfo(build-id) = cedb95f3351b1543352f96acae1f0bd78e4656d6 debuginfo(build-id) = d5311d42f100b030785bde67c4006cdf04c4d611 debuginfo(build-id) = db0a2e65930bb369a4e76bfcd19421f1bd03af6c debuginfo(build-id) = e3012d58ea63f26f765f61fad030a7348fd286db debuginfo(build-id) = e6e57c5d67a04643770366842d5dd4278f14dfce debuginfo(build-id) = f8cf5768b823d742353c4cccb3e0043af8e2593b seqan-debuginfo = 1.4.2-53.fc40 seqan-debuginfo(x86-64) = 1.4.2-53.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: seqan-debugsource(x86-64) = 1.4.2-53.fc40
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64
Wrote: /builddir/build/RPMS/seqan-devel-1.4.2-53.fc40.x86_64.rpm
Wrote: /builddir/build/RPMS/seqan-debugsource-1.4.2-53.fc40.x86_64.rpm
Wrote: /builddir/build/RPMS/seqan-doc-1.4.2-53.fc40.noarch.rpm
Wrote: /builddir/build/RPMS/seqan-1.4.2-53.fc40.x86_64.rpm
Wrote: /builddir/build/RPMS/seqan-debuginfo-1.4.2-53.fc40.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.wGX9ux
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.Ofn2bI
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf /builddir/build/BUILD/seqan-1.4.2-SPECPARTS
+ rm -rf seqan-1.4.2 seqan-1.4.2.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0

RPM build warnings:
    %patchN is deprecated (2 usages found), use %patch N (or %patch -P N)
Finish: rpmbuild seqan-1.4.2-53.fc40.src.rpm
Finish: build phase for seqan-1.4.2-53.fc40.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1706326045.829450/root/var/log/dnf5.log
INFO: Done(/var/lib/copr-rpmbuild/results/seqan-1.4.2-53.fc40.src.rpm) Config(child) 29 minutes 2 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "seqan-devel",
            "epoch": null,
            "version": "1.4.2",
            "release": "53.fc40",
            "arch": "x86_64"
        },
        {
            "name": "seqan",
            "epoch": null,
            "version": "1.4.2",
            "release": "53.fc40",
            "arch": "src"
        },
        {
            "name": "seqan-doc",
            "epoch": null,
            "version": "1.4.2",
            "release": "53.fc40",
            "arch": "noarch"
        },
        {
            "name": "seqan-debuginfo",
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RPMResults finished